mRNA_H-paniculata_contig2193.5792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2193.5792.1
Unique NamemRNA_H-paniculata_contig2193.5792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2193.5792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2193contigH-paniculata_contig2193:12872..16293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size963
Cds size804
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2193.5792.1prot_H-paniculata_contig2193.5792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2193 12872..16135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929598.6246216-CDS-H-paniculata_contig2193:12871..136451622929598.6246216-CDS-H-paniculata_contig2193:12871..13645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 12872..13645 -
1691480930.1654065-CDS-H-paniculata_contig2193:12871..136451691480930.1654065-CDS-H-paniculata_contig2193:12871..13645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 12872..13645 -
1622929598.6399872-CDS-H-paniculata_contig2193:16105..161351622929598.6399872-CDS-H-paniculata_contig2193:16105..16135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 16106..16135 -
1691480930.1756582-CDS-H-paniculata_contig2193:16105..161351691480930.1756582-CDS-H-paniculata_contig2193:16105..16135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2193 16106..16135 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929598.6515927-UTR-H-paniculata_contig2193:16135..162931622929598.6515927-UTR-H-paniculata_contig2193:16135..16293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2193 16136..16293 -
1691480930.1846335-UTR-H-paniculata_contig2193:16135..162931691480930.1846335-UTR-H-paniculata_contig2193:16135..16293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2193 16136..16293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2193.5792.1

>prot_H-paniculata_contig2193.5792.1 ID=prot_H-paniculata_contig2193.5792.1|Name=mRNA_H-paniculata_contig2193.5792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MAAATRWDSQTASMGINSTARRNTSAVTVGSTVTHLTAGMTDPPLFRGHR
EGRAAIEPRPGGAKEDSESAKRMHRQLSGSAAVPAPEPHGEVHESIRTYL
SIPFSPTSSVTNRSAEISSRSSGGGGGGRLNEPHHRAHKHDSDVDNTGTI
TATTTSSTTKQDARAPIVEKADGRAIVLDTILAVGDHDSICSPNSVKSPP
PPPPPPPAVAAVGAGAETESPAPRRNKAHASENPELDRSGAVPTASTEGG
SAGESDVGRGERTFSAAG
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mRNA from alignment at H-paniculata_contig2193:12872..16293-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2193.5792.1 ID=mRNA_H-paniculata_contig2193.5792.1|Name=mRNA_H-paniculata_contig2193.5792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3422bp|location=Sequence derived from alignment at H-paniculata_contig2193:12872..16293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGGAAAATAGGAATTAAAGGTACTTACAAAGCCAATTAAAGGAAAA
ATATGAATCCTCTGGACGACGGGTCAGAGCGAAGGGGCTTTGTGCCGTGG
TCTTTATCCAATCCCCTGGCATAGCGAGTGTTGTGTGTTACAATCAGGAC
TTGTGCCAATGGCGGCAGCCACTCGCTGGGACAGCCAGGTGAGTCTCCCT
ATGCTTAGGTGGATGCATACAGATAGGTTCCTTTCTTGGTTGTGTTTTTG
TTCGTAGAGCTGGTGAAATACGGTGTGTGGAAAATTATGGTAGGAAATTT
GCCAGTCCTTATTCTGTAAAGTTCTAGTGTCGTGTTTTGTCAAACAAAGC
CCGCACACGAGAACCAAGTTTACAAGCATAACAGACAGCCAATGCAGTCC
AGTGTCCACAAGCACTACAGTGCACACAGCGATCCTATGATATCCACCAT
CGACACATGACCCTGCTACTGTTTAATCATCTGCTGGTATATGCCAGGGA
AAATCCGAGATGGTGGTATGCCCGTTTTCGCGAAGATAATATCACAGTTA
GAGCAGGGCTGGTGTTGATTTCGTTGCTTGGTGTCAACCAACACCTCGTC
GGCTTTTCTTGCCAGCCCATTGCAGACAGTACAGTAGAGTACAGTGCAGT
AAAGCATAGTACAGAAAACAAACAACCGTTGCTCGTGTGTTGCGGGATGA
CCGAAAAACCTATACAAATCGATTTGTACTCTGCATGTGTTGACAGCAAG
GTACTCACATTTTACCTCCCTGCTCCCCCCCTTGTCCTATATTTTGAAAT
TTGCTCCAAGTGTACGCTAAATAGGTAAATGTAAATGTGCGTATGCTGTC
AAAATGCGTGGATCTTGCAAATTCATTCGATGCGTCGACAGATATATCGA
AACATGGCGATAATACTGCAGGACCTCCCGACCTACTAGTACGTACATCT
TTCTGCTGGACTTCGTACTGACCGTACTCAAGTGTACTTACTCTCTGCAC
ACAAACTGTACAGTATTAATCTTATCTGCTTGGGTCGACGCAGGTAATAT
CTGGTGTCGCTTATTTATTTTGCGAGATTCGCGTGAAGCCTGATCCATTG
CTTGATGTGGAACAACAAACCGCAGGCGGACAAGGGCGCGCGTGGGGGGG
GGGGGGGGTATGAGGTTGGAAGAGGGAAGGGAAGCGCAGGGAAGCGTTTA
GGGCGTGGGTTACTTGCCGACAAATTGAACAAACTTTTCGGCGGAGCATT
TATTACCCGTCTTATAATAATCTTACGGCGATGGCAGTGGTGGTTGTTGT
GACTTGGTCGTAATTTCGGATTAGTAAGTTTCGCCGGACGGCCCCAGAGA
TCGCCTATTGTCGATGTTGGTTTCAACCATGCATTTGACCCTTCGCCAAA
GTGGCACCGAAATTGTCATGCTCCAGAGAGAGAGAGAGACTCACGGCCTG
GTCTGGGTTCGGAATATCATGATATCCATGCTCCATGATCATTTTCAAAG
GGCCTGCGGGCAAACAAAGAGGAAGTCGCTGGCCTTTTTTTAAAGACCTC
AAGGCGTAGAGATGCTGGAGACAGGCAGCAGTGAACGAATTATTTGTGTC
GTAAACAGGGTAACGGATACACAGCAAAACAATGTTGTCAAGCATCCACC
CCCCGAACTAATACGAATAGTTGCAAATTGGTTTTCACAAGAAACTGAAA
GTATTCGTCTGAGTTTCAAAATGAGCTCGTGTCATTTCTGTGCCCCGGAC
CATCCACGATTGCCAATAATACTCTTGAATCAAATGGACATGGGTGGGTA
CTTTATTCTATCTGTCCGCTGATTCTGAAACTCAGGCGAATATATATATA
TTTTTTGTGAAAACTATTTGCACGTATTCGTATTTGTTCGGGGGTTGCAA
TCATCACGCAAGGTACGGGACTAAACACCCTTCTATTTAGAGAGCTGATT
AAGCAGTCCCGAATTTTCATTTGGCTTGGTTTGGCTTTTTTTTGGTCCCC
CTCGTCGATTAACAATCACGAGTATAATCAACCCAACCCGTCGCGCATAC
AATCAAACGACTCTTAGTTTGTTCGGAAAATTGCTGATGAATCAGTTGCC
CCGATTTGATCTTGTGTTTCTGGTAACACATAAATTTGAGGTCAGCTGCA
TTGAACCTCTACAGCCCCCCGCAGTCCTTTCCTCCCCTTAAACGGTCGGT
GTATGGATATTTTCATCACTCAGCGGTAGCCAACTTATTGAATGTATCCT
CAATGGGTCTCATGTTTATGATTACATTTTCTAATTGTAGTCGTCGCTTG
GTCGGAACAAAGCTCCTTACTCTCGAGGACGTGAGGTCAATGGTCTAATA
ATAACTGTGGGATGCTTGACCAACACGAATACTGATAATCAATAAGAATA
ATAGCTAAACAAGCCGAAGATTCATAAGCCTCAACAGCGAGAATAAAAGT
AGCGAATTTTTTATCCATAATATCGTTCAAAATGAACACAAAAGAAACTT
GCAGAAAAAAAAAAAAAAAAATGCCAAAAGATTAATATTTTCAAAAATAT
GATTTCGATTTCAAACAATCCCCCCGCCCCGCCCCCCTACATCCCCCACG
CGCCGTAAATTATCACCACCCCTGCCCCCCTCAACGTGATTACAGTAGAC
GGCCAGCATGGGCATAAACTCGACTGCGCGCCGAAATACGAGCGCCGTGA
CCGTTGGCTCTACGGTGACACACTTGACCGCAGGCATGACAGATCCTCCT
CTTTTCCGAGGCCATCGAGAAGGACGGGCGGCCATCGAGCCACGACCAGG
GGGGGCAAAGGAAGATAGCGAAAGCGCGAAGAGGATGCACAGGCAGCTGA
GCGGCTCAGCAGCCGTTCCGGCGCCGGAGCCGCACGGAGAAGTGCATGAA
AGTATACGTACCTATTTGTCGATTCCTTTCTCGCCCACCAGCAGCGTCAC
CAACAGAAGTGCGGAAATAAGTAGTCGTAGCAGCGGCGGCGGCGGCGGTG
GAAGGTTGAACGAACCACACCACCGTGCTCATAAACACGATTCGGACGTT
GACAACACAGGCACCATTACCGCCACCACCACCTCCTCCACCACCAAACA
AGACGCACGTGCCCCTATCGTCGAGAAAGCGGATGGCCGTGCAATAGTTC
TCGACACTATCCTGGCAGTAGGCGACCACGATAGTATTTGTAGTCCGAAT
AGCGTTAAATCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCAGTAGCTGC
CGTAGGCGCGGGCGCCGAAACGGAGAGCCCTGCACCACGCCGTAACAAAG
CACATGCGAGCGAAAATCCCGAGCTGGACAGATCGGGAGCGGTGCCGACG
GCTAGCACAGAAGGCGGGAGCGCGGGCGAGTCAGACGTGGGACGGGGAGA
ACGCACATTTTCAGCAGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2193:12872..16293-

>mRNA_H-paniculata_contig2193.5792.1 ID=mRNA_H-paniculata_contig2193.5792.1|Name=mRNA_H-paniculata_contig2193.5792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig2193:12872..16293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCAGCCACTCGCTGGGACAGCCAGATGGCGGCAGCCACTCGCTG
GGACAGCCAGACGGCCAGCATGGGCATAAACTCGACTGCGCGCCGAAATA
CGAGCGCCGTGACCGTTGGCTCTACGGTGACACACTTGACCGCAGGCATG
ACAGATCCTCCTCTTTTCCGAGGCCATCGAGAAGGACGGGCGGCCATCGA
GCCACGACCAGGGGGGGCAAAGGAAGATAGCGAAAGCGCGAAGAGGATGC
ACAGGCAGCTGAGCGGCTCAGCAGCCGTTCCGGCGCCGGAGCCGCACGGA
GAAGTGCATGAAAGTATACGTACCTATTTGTCGATTCCTTTCTCGCCCAC
CAGCAGCGTCACCAACAGAAGTGCGGAAATAAGTAGTCGTAGCAGCGGCG
GCGGCGGCGGTGGAAGGTTGAACGAACCACACCACCGTGCTCATAAACAC
GATTCGGACGTTGACAACACAGGCACCATTACCGCCACCACCACCTCCTC
CACCACCAAACAAGACGCACGTGCCCCTATCGTCGAGAAAGCGGATGGCC
GTGCAATAGTTCTCGACACTATCCTGGCAGTAGGCGACCACGATAGTATT
TGTAGTCCGAATAGCGTTAAATCGCCGCCGCCGCCGCCGCCGCCGCCGCC
CGCAGTAGCTGCCGTAGGCGCGGGCGCCGAAACGGAGAGCCCTGCACCAC
GCCGTAACAAAGCACATGCGAGCGAAAATCCCGAGCTGGACAGATCGGGA
GCGGTGCCGACGGCTAGCACAGAAGGCGGGAGCGCGGGCGAGTCAGACGT
GGGACGGGGAGAACGCACATTTTCAGCAGCGGGGACGGCCAGCATGGGCA
TAAACTCGACTGCGCGCCGAAATACGAGCGCCGTGACCGTTGGCTCTACG
GTGACACACTTGACCGCAGGCATGACAGATCCTCCTCTTTTCCGAGGCCA
TCGAGAAGGACGGGCGGCCATCGAGCCACGACCAGGGGGGGCAAAGGAAG
ATAGCGAAAGCGCGAAGAGGATGCACAGGCAGCTGAGCGGCTCAGCAGCC
GTTCCGGCGCCGGAGCCGCACGGAGAAGTGCATGAAAGTATACGTACCTA
TTTGTCGATTCCTTTCTCGCCCACCAGCAGCGTCACCAACAGAAGTGCGG
AAATAAGTAGTCGTAGCAGCGGCGGCGGCGGCGGTGGAAGGTTGAACGAA
CCACACCACCGTGCTCATAAACACGATTCGGACGTTGACAACACAGGCAC
CATTACCGCCACCACCACCTCCTCCACCACCAAACAAGACGCACGTGCCC
CTATCGTCGAGAAAGCGGATGGCCGTGCAATAGTTCTCGACACTATCCTG
GCAGTAGGCGACCACGATAGTATTTGTAGTCCGAATAGCGTTAAATCGCC
GCCGCCGCCGCCGCCGCCGCCGCCCGCAGTAGCTGCCGTAGGCGCGGGCG
CCGAAACGGAGAGCCCTGCACCACGCCGTAACAAAGCACATGCGAGCGAA
AATCCCGAGCTGGACAGATCGGGAGCGGTGCCGACGGCTAGCACAGAAGG
CGGGAGCGCGGGCGAGTCAGACGTGGGACGGGGAGAACGCACATTTTCAG
CAGCGGGG
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