mRNA_H-paniculata_contig2179.5761.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2179.5761.1
Unique NamemRNA_H-paniculata_contig2179.5761.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2179.5761.1 vs. uniprot
Match: A0A836CNA7_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.190e-15
Identity = 58/158 (36.71%), Postives = 80/158 (50.63%), Query Frame = 3 
Query:    6 KHLAAGEMVWEVGSPVTHVVIVAEGRLRFH------------MNDEILPL------MNG----SCPQMGRR----------LGPGERLRRVVCPEFFFPGAMIGPAGTLLDPEEGNNHRHTLFAVIPSVVLVIDREDMRSFSYANPGVFMAIHDLMFV 383
            + L  G++VW  G+P+   V++A G L F             M+  +L         NG    SC + G            +G GE  RRV CP  F PG +IG +G L+  E G  H+HTL    P+ VL+++R+ M  FS  NPGVF++IHDLMFV
Sbjct:  758 RDLDQGDVVWRRGTPMCFTVLLARGVLYFSDLTSGETIMDAAMDRGVLSRHSACASRNGTGACSCHRHGSNGDSASYQNGVMGDGESRRRVRCPAEFHPGTLIGRSGPLISAE-GGTHKHTLRCKTPATVLLVERDRMHYFSINNPGVFLSIHDLMFV 914
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2179.5761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNA7_9STRA3.190e-1536.71Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2179contigH-paniculata_contig2179:1916..7679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2150
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2179.5761.1prot_H-paniculata_contig2179.5761.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2179 3677..7653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.2998846-UTR-H-paniculata_contig2179:1915..36761622929594.2998846-UTR-H-paniculata_contig2179:1915..3676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2179 1916..3676 -
1691480927.8963869-UTR-H-paniculata_contig2179:1915..36761691480927.8963869-UTR-H-paniculata_contig2179:1915..3676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2179 1916..3676 -
1622929594.4141788-UTR-H-paniculata_contig2179:7653..76791622929594.4141788-UTR-H-paniculata_contig2179:7653..7679Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2179 7654..7679 -
1691480927.944229-UTR-H-paniculata_contig2179:7653..76791691480927.944229-UTR-H-paniculata_contig2179:7653..7679Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2179 7654..7679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.3187566-CDS-H-paniculata_contig2179:3676..37871622929594.3187566-CDS-H-paniculata_contig2179:3676..3787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 3677..3787 -
1691480927.9096305-CDS-H-paniculata_contig2179:3676..37871691480927.9096305-CDS-H-paniculata_contig2179:3676..3787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 3677..3787 -
1622929594.337573-CDS-H-paniculata_contig2179:5831..59031622929594.337573-CDS-H-paniculata_contig2179:5831..5903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 5832..5903 -
1691480927.9198365-CDS-H-paniculata_contig2179:5831..59031691480927.9198365-CDS-H-paniculata_contig2179:5831..5903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 5832..5903 -
1622929594.3563483-CDS-H-paniculata_contig2179:6479..65801622929594.3563483-CDS-H-paniculata_contig2179:6479..6580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 6480..6580 -
1691480927.928049-CDS-H-paniculata_contig2179:6479..65801691480927.928049-CDS-H-paniculata_contig2179:6479..6580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 6480..6580 -
1622929594.3970637-CDS-H-paniculata_contig2179:7574..76531622929594.3970637-CDS-H-paniculata_contig2179:7574..7653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 7575..7653 -
1691480927.936228-CDS-H-paniculata_contig2179:7574..76531691480927.936228-CDS-H-paniculata_contig2179:7574..7653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2179 7575..7653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2179.5761.1

>prot_H-paniculata_contig2179.5761.1 ID=prot_H-paniculata_contig2179.5761.1|Name=mRNA_H-paniculata_contig2179.5761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MVWEVGSPVTHVVIVAEGRLRFHMNDEILPLMNGSCPQMGRRLGPGERLR
RVVCPEFFFPGAMIGPAGTLLDPEEGNNHRHTLFAVIPSVVLVIDREDMR
SFSYANPGVFMAIHDLMFVC*
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mRNA from alignment at H-paniculata_contig2179:1916..7679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2179.5761.1 ID=mRNA_H-paniculata_contig2179.5761.1|Name=mRNA_H-paniculata_contig2179.5761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5764bp|location=Sequence derived from alignment at H-paniculata_contig2179:1916..7679- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCGAAGCACCTGGCGGCGGGAGAGATGGTGTGGGAGGTGGGAAGCCCA
GTCACCCATGTTGTTATCGTCGCCGAAGGGCGACTGAGGTTCCATATGAA
CGACGGCGAGTAAACACAGGACCTGACCTTGGCGCCGTGCTCAATTCGTA
CAAACCCTGCAAGACGATCTTGTGCACCTGATGGATTTCGTTAAAACGTG
TAACGAAAATCCCGTACATTTTTATCTGTACCTTAGCTACCTTGCGGCTT
GTTGGTTACGTTTTTGACTTTTTTCCATGTAGCGCTAACCCTACACTGAA
CAATTGCTATTCAGTGTATACTACGTGTATTTTGAAGAATAAGAATGAAT
ATACGTGAACAGTACTTCTTGAGAACTAGTGAAAAAAAACAACAGTTATG
TCGTTGAACTTGATGGCAAACAATCGTGTCTGATATTTATCGAAGATTTC
TTATATATGTCAGAGAAAAATCTAGGCCTATTTGCGCGTTAGCTACATCG
TTCTATTTCTGACGGAGTCTATGTAAGCGAATGGAGGGGGGGGGGACTCC
AAAGTGTATATCAAACACGGACTGTGCTTCACCTGCCATAGCGTCCACCC
ACTTGGTTGATTCAATTTTGGAGAATATGATTGAAAAGCTTGTTGGAGTA
GCTTCCAATTGCGCAGTTCAGTTTGTGGTGTATCGCAGATGTTGAGACTT
GCTGATGCCATACCCTTGAGGACGCCCTTCCCCTCGCCCCTCGCCGCGTC
TTTTACATCGACCCTTTGTTTGTTTTTTATGTATCTCAAACACTGGAACA
AAGAAAATTTGATTCAGGATGAAGATTATTCGACCTCTGGAGCTCTATTT
CACTTGCGCAGTTACGTAGCCTCCACATATTTGTTTCTTTCCGACAACTG
TGCAGACTGGAATATGACGATCCGTGGTAATGCATGACATAGAATCGATC
ATTACGTAAGATTCGCTGTTGCTTGGAGGGCAAGTAAAAAAGCACTACCA
TCGTATCCCGTTATGTTCTTGTTTGAAACCACTTAGCTTTTATCGCGACG
ACGTAATATAACTGATTTTGGCTTTCTGGGCGATTCTTTCGTGCTGCAGA
GATTCTGCCATTGATGAACGGCTCGTGCCCGCAAATGGGACGACGTTTGG
GACCTGGAGAACGCCTGCGACGGGTAGTGTGTCCTGAATTCTTTTTTCCG
GTAAGCGCAGCCGTCACCAAATTCCTTGGCCATACCATCATATATATTAC
AGGGATCTCGACCCAGACGCATGGTGAAGATGAGGCCCACCTCTGAGAAA
CTAGCAGACAAAAAAGAAGGCTCATTTCTCTCAAATTTTGCGTAGTAAGA
AATCGACCTCAAATTGTGGCCCGATGCGAATTCCTATTGATGAACTATGA
TATATATATATATATGTGTGTGTGTGGTGTGTGTGTATGTGTGCGCGCGT
ACATGTCAGGTGAGGGTGCAAGTAATCTGTGGATTTTCTCAGTAGCTGGT
CGCATCTATACCGCGACACAAAAGAGGTTTCGATACAGTGCTAGCCCCGA
TCAGGAACTCACTTCTGGTGTGCGGCTCAAAAGCGTATTGGGACGATTAA
TTACAGTGACCAGCATTTAGTGTATATGAATTAGTGTGGGTCACGACTTG
ATCATAATGTTTCAGGAGATCTTTATTAGATTTGGGGGAATGTGAGGCTC
AGATTAGTACTTGCTTGTTTTCTTGTGGGCTTGGTGCTGTATTTAAGCTG
CTCCGCTGACGTAACGGTGGTTCCAGGGGGCGATGATTGGACCAGCGGGA
ACCCTCTTGGATCCCGAGGAGGGCAACAATCACCGTCACACCCTCTTTGT
GAGTACAGTGCGTAACCCCACGGGAGGCTTGCCAGGGTGGGAGGTACAGG
GGTATTTACGTTCACACAGAGAGCTTCTAGTTGGCTGAGAGAGAGATAGA
GAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGAAATGGCACCCGAGAAGAA
GAGATGTCAAGTTCGAGAACAATGTTATTTTAATGATGAATGTCTAACAA
TTGTTTCTATGAGGCTCAAAACCTTGTTTCGGTAGCCAACGTTTCTTGCG
ATATGTACAACATCTCAGTTTCGTTCTGCAGCACCTACTACGGGCTATTG
CGCACCTACTCCAAGACTATATTGTCGACAAGTTTACTGGAGCAGTACGC
ATGTGCTGCACCAGCATTTCTGCCAATCCCTGTGAAACACCGGATACACT
TGTTGCCACAGTGACGGAACATTCGACGTTAGCGAGGACTGCTTCTTATC
TCAGCTCCACACAGTCAAGGCCCCTGTGTCTCATCCATCCATTAAAATAT
CGAGCCATATCTGAGTAGTTTTCTGTCTGATCACTTCTATATATCGTAGC
CAGGAGGTGGAGCACCGTTTCTTCAGGAGATAATTAGTTGAAAATATGAC
GTTCATTTTCGTATCCGTTATTTATCGTTTCTGGTCATCAGCCGGCTACT
GCAGGGCACAATGCAAAACACCATTTGGCGGGTTCTTTGGGATACGATCT
CACTGTTTCTGGAAATTTGTGGATAAATCTTTCCCAACCAACAACTGCCA
GAGAAATTGACACCTCTTATATCTGCCCAATGCCTCTGCCGTCGTGAAAC
ATTTTTTCAGACTCAGCTGAGTTTGAACGTTTTCTCACAACGGCGTGAAA
CTGTGAGATTTCTAGCGATACTATGGTAGTATATCTCTTCTATGAGCGTC
CAATGCACTTGGTGTAATACAGACTTTGGCTCCGAATTGACCTATTATAT
TCGCTTGACGGACTACTTGATAAGTATACGGAGGAACATAAACAATGAGC
TATGGTCGTAAGGATAGGTCCTACCCGATTGGTGCAAGTGCTCAGTAGCG
AACTTGTCACCTTCGATAGGCCTGTAGCACCTACACGACCCACGGAATGT
TTTCAAGGCTGGTTCACCTGACGGCACAATCTGACAAAGCTAATCTTCGA
TCGCCTTCAAGTTAGGTAGGACATTGACCGCGAACCCGGCTGTTGAAGGC
AAGCAATTTCACAAAACCGATCACCGAGCGACTCGAATCAGACAGAAAAT
CAACCGCGAACCAGTTTTAGTGTTGGGCACGTACAAACGGTGAAATATCG
GGTAGGCGAAAATCCTTGAAACAATTGGGGTGAATCCTCGGTGTTCCCGG
TCGTATTTGAATCGCACCTCAAGCATGCATTCAGACGTTCGAATATTATT
TTGGAGTTTGATGCCCTATAGAGTCGTGCGTGCGTACTTGCCATTGCGGA
ACCCCGTTGTCAGTGCAAAATTCGCCTCTGTTATAATTATTCAAGTAAGT
AGATTTCTTGGCTAACTTTGGAACCAAGCGCCATGAAGCCATGTGAGAAC
AAAGCTCGCACTGGTGAGTCCACTTTAGATAACGTAAAATCCAAACGAGA
CATCGCACCGGCATGCGACCACTCTTCAAACGTCATCATCTCGACAACTA
CGGCGATGGCTTCTGACATCGAATAGTGGCGTGCCGTTGGAAGGATCTTG
TTTCAGAGATCTGTTGATTGGCGGGTCCTTCCGGCCGCCTAAGGTCTCCG
TTCTCCAGATAGTTGCGTTTGAAAAACGTTTCGCACCCCGGTGCGATACC
TTTTAGGGATTTTAAGGTATGTTGGGCTCACTTTAAGGTAGAGAATGTGA
GTCGTTACATGGTAGAGCCCTAACGGTACTTGAATATTCATGATGAAAGT
GGTGTAAGCATATGGAAAGGGGACTGCTATGAACGTTATCGTTGTCAGCG
TTTGACTCTCCACGACACCGCTCATTCGCTTCTCCACGTTGCTGTTTGTT
ACTTGCCACGCCCGTGGTTTTTCTGGTGCGTTCTCGAATCAGGCCGTGAT
ACCCAGCGTGGTGCTGGTAATCGATCGAGAAGATATGAGGTCCTTCAGCT
ACGCCAATCCGGGGGTCTTCATGGCTATCCACGACCTCATGTTCGTTTGT
TAAACATTCCGAGTATGAGCAGGGCAGCTGATTTGACGGAGGTAACCTGG
TAATGAAGTAGTCATCATTCAATTTTCATATGTAGAGTAGCAACATATCC
CCACCAGCGTGAGAGTTCGATTGCACCTGGTTTCACAGAATTTGGTTTCA
AGCAATTTTGATGATTAGAAGAGGCGAAATGTACTCCTCGTTGAGTTGCA
CGCTGCTATCCGCGAGAGTACTCCTCGAAAAGAGCAAACGCGATTGTACG
CCTGTGTGCGTGCTCAAGACCAAACGAACCGGAATTGGGGCAATGGACAC
GTTTTACCTTCAGCCAGCCTTATCGAGGGTATATCAGTAGCTAGCTTGCA
ATAGAGGGGTATGTACAAAAACCGGGACCGTAAGAGGGATTGATCGGCAA
TCAAAGCATAATCGTTGGTTCAAGTTTACGCACACTACAAGTGCGCCCCG
AAAATGCGCGCCTAATAGTGGAGGGGCGCTTTGTCGAGGTTGTGTACACT
GTGGGTATTTTTAACGTGTACACCTTGATTCGTGTCGTATACGTTTAGCT
ACTCTAAAGTGGGCGCGTGCCGTGAAATAACGTGGCTCAAAAGGAGTAAC
AAGCGTGTCTTGTGTTGGATCTTAGCCAGTCTCTAGACGAACCATCATGT
TTCGTGGGTCTTCGTGTGCGCCGAGCCCTTACGTGGTGAACATCATATGC
AAATCAGCTGGTTTGTTGTACTGTGTGGTTTTTTTTGCGTTGCGTAGCTC
GCCGCAAGGGTGAGAATCTTGGTAGAATGTTGTCGTTCCGTACGTGTCTG
CGAGGCAGGTAACGCCAATGAGTGTGTACGTCCTCATCCAATCCCCTGCT
CTCCCTCCTCCGTACTTTCTTTGCATGGGCACGAAAAACAAACATACATC
AAACGAACCGTTCGTCATAGGAATTTCACGTGTGCCGTCATGACCAGGAA
TGACAACCGCCTCCCTACCGCTAGCAGTCTCTGCCCTTCACATTTGTCCG
TCTGGAGGATCTTCCGCCTTAGGCCATATTCATGTATTTGCATGAGCACA
CAAAGACACGAGGGGGGAGGCGGGGGTGGAAGAAGAGATACTGACAAGTG
TAGAGTGCGCATGTTGAATTTTCACAGTGAGATTATGCATATGCACTGTC
GAAATGATACCGCTTTCTCGAATAGGGATCCCGCTATAACTTGACAGTTA
ATTATAAAGCAGGAGTACAGTACACCACAAGCAAGTTGCTGTTGCTGCCA
GCGGGAATACGGCAGCCCAAGGAAGCTATTGATCCCAGTACAAGTAAGAC
ATGTTGTTTTAGTGGTCTCTATTTGCACTACGACATAAGCTATCTTTTGT
ATCGGATCTTGTTTGCGGGATGTCGTTGTTCTGACTCTAGTATTATTATT
ATTACTATTATTACTAATTTTTGCTTTTGTATTATTGTTGTAGAATGACA
TAGTGCTAACAGTAAAATACCTACAGTCAGAGTGTACTTCAACGTATGAC
TTTCAGCGGTAGAATTATGGTTGGCATGTGTGAGTTTAGCAATGAACAGG
TCTCGCGCATCTTCGATTGGGAGACTACAATCATAGTAGCTATCTCAGGA
GGAAAGGACACAATGAGAGTCCTCTGTGTTTCTATTCGATAATGAGAGCT
GTAGACAGTGAGTGGTTGAAACTTCCTCATCAAGGAGATGGTACTATATG
TTCAACGTACCCGTTCCGCGACGGACAGTAGGTAACTTGGAGAGTGTTGG
AAATACGAGTTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2179:1916..7679-

>mRNA_H-paniculata_contig2179.5761.1 ID=mRNA_H-paniculata_contig2179.5761.1|Name=mRNA_H-paniculata_contig2179.5761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig2179:1916..7679- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGGGAGGTGGGAAGCCCAGTCACCCATGTTGTTATCGTCGCCGA
AGGGCGACTGAGGTTCCATATGAACGACGATGGTGTGGGAGGTGGGAAGC
CCAGTCACCCATGTTGTTATCGTCGCCGAAGGGCGACTGAGGTTCCATAT
GAACGACGAGATTCTGCCATTGATGAACGGCTCGTGCCCGCAAATGGGAC
GACGTTTGGGACCTGGAGAACGCCTGCGACGGGTAGTGTGTCCTGAATTC
TTTTTTCCGAGATTCTGCCATTGATGAACGGCTCGTGCCCGCAAATGGGA
CGACGTTTGGGACCTGGAGAACGCCTGCGACGGGTAGTGTGTCCTGAATT
CTTTTTTCCGGGGGCGATGATTGGACCAGCGGGAACCCTCTTGGATCCCG
AGGAGGGCAACAATCACCGTCACACCCTCTTTGGGGCGATGATTGGACCA
GCGGGAACCCTCTTGGATCCCGAGGAGGGCAACAATCACCGTCACACCCT
CTTTGCCGTGATACCCAGCGTGGTGCTGGTAATCGATCGAGAAGATATGA
GGTCCTTCAGCTACGCCAATCCGGGGGTCTTCATGGCTATCCACGACCTC
ATGTTCGTTTGTTAAGCCGTGATACCCAGCGTGGTGCTGGTAATCGATCG
AGAAGATATGAGGTCCTTCAGCTACGCCAATCCGGGGGTCTTCATGGCTA
TCCACGACCTCATGTTCGTTTGTTAA
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