mRNA_H-paniculata_contig21783.5758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21783.5758.1
Unique NamemRNA_H-paniculata_contig21783.5758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A6H5JLQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.400e-23
Identity = 65/141 (46.10%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   37 AATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRNN---------------------------------AGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            AA A+A+ GMAGAH GAR TA +  + LK+ALGVLM+AVAPL+PLRD  S  +                                 AG    +   P      V  M AIG GSGFLAGVFGVGGGV+TVP++SL TDL H
Sbjct:  150 AAGAIAVAGMAGAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKDDVSVKERHEEESEERSSADATGLQGGGRLLPTEAGGEGTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGH 290          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: D8LHF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.090e-21
Identity = 67/155 (43.23%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   37 AATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRNN--------AGEPILAV--------------------------VFP-----------IPDLSM--VLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            AA A+A+ GMA AH GAR TA +  + LK+ALGVLM+AVAPL+PLRD  S N         A + I                             + P           +P +S   V  M AIG GSGFLAGVFGVGGGV+TVP++SL TDL H
Sbjct:   66 AAGAIAVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHNKGPCLRPSTAADDIAXXXXXXXXXXXXXXXXXXEATGLLDGGGLIPMEEGGEGTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGH 220          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S0C0G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0G1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-19
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLR----DSFSRNNAGEPIL--AVVFPIPD-----LSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            A  +A+GGM  A +GA AT+++SP  LK ALG+ MI V+P+LP +    D+F   N G      A+     D     L+ VL ++ IGLGSGFLAG+FGVGGG V VPA+++ TD++H
Sbjct:  160 AAGLALGGMITARLGAGATSKLSPQALKRALGIFMILVSPVLPAKQYIADNFGGINDGTETTQNAIQKESNDSYEERLTKVLPIACIGLGSGFLAGMFGVGGGAVVVPALTIATDMNH 277          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: B7G9A3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A3_PHATC)

HSP 1 Score: 88.2 bits (217), Expect = 6.780e-18
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 SWTMNHYFPCRSAATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFS-RNNAGEPILAVVFPIPD--LSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            +W+  H     SAA A+A+ GM  A +GA  T R S + L+ ALGVLM+ +AP +P +   + R  A E   A    +P   LS  L  +AIGLGSGFLAG+FGVGGG + VPA++L TD +H
Sbjct:  104 AWSYVHEVQWESAA-AIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAKAYLTQRAEATEASRAEAETMPSEPLSRFLPPAAIGLGSGFLAGLFGVGGGTIVVPALTLATDCTH 225          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S1CXT3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXT3_CYCTE)

HSP 1 Score: 79.3 bits (194), Expect = 5.100e-16
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   37 AATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSF-SRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            AA A+A+ GM  A +GA  T+ +S   LK ALG+ M+ VAP++P R    S     EP +        +  +L  S IGL SGFLAG+FGVGGG + VPA+++ TD++H
Sbjct:    1 AAAAIAVCGMITARIGAATTSILSERTLKQALGIFMLCVAPMVPGRKYILSDKRTVEPSVG---DAGFVKRILAPSLIGLASGFLAGLFGVGGGAIVVPALTVATDMNH 106          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S1VQG5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQG5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.780e-15
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            A A+A  GM  A +GA  T  ++   L+ ALGV MI VAPL+P R +++   A     A  + I   + ++   AIGLGSG+LAG+FGVGGG + VPA++L TD++H
Sbjct:  113 AAAIAACGMLTARLGAYTTVHLTEKFLQQALGVFMIGVAPLIPAR-AWTLKQAKSTQPADEYDI--YTKIVVPGAIGLGSGYLAGLFGVGGGAIVVPALALGTDMNH 216          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S4VM12_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM12_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-14
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLR-------DSFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            A A+A+ GM  A +GA  T +IS S LK  LG  M+ VAPL+P +        + ++N+  E           +  +L  S IGLGSGFLAG+FGVGGG + VPA++L+TD++H
Sbjct:  167 AMALALTGMFTARLGASTTTKISASKLKRLLGFFMLGVAPLVPAKAYIMEAKKNDTKNHDTER--------NRMERLLPASIIGLGSGFLAGLFGVGGGAIVVPALTLSTDMTH 272          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A836CP97_9STRA (Sulfite exporter TauE/SafE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP97_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.720e-14
Identity = 53/133 (39.85%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   49 MAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRN-----NAGEPILAVVFPIPDL------------------------SMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            M + GM  + +GA+AT R+  S LK  LGV MI +AP++  RD          +  EP+ +   P   L                        S  L+M+AIG  SGFLAG+FGVGGG VTVPAISL TD +H
Sbjct:   53 MVVAGMVTSTLGAKATGRLKQSTLKRMLGVFMIGIAPVVIFRDQLLEYAHRPVHGEEPLHSNPNPSNQLGGAGGDGGGEHKAVVATAAVERPSSDPLRMAAIGACSGFLAGIFGVGGGAVTVPAISLCTDFTH 185          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S4EEL0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.390e-14
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRD-----SFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
            ATA+A+ GMA A +G  A++++S + LK ALG  M+ +AP +P ++           + E  +   + +P        + IG  SGFLAGVFGVGGG + VPA+SL TD++H
Sbjct:   73 ATAIAVCGMATATLGVHASSKMSQTTLKKALGAFMLLIAPTIPAKEYLISTKVETEESIEHSIVRRYAVP--------AGIGCCSGFLAGVFGVGGGAIVVPALSLFTDMNH 176          
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A812LAW2_9DINO (YunE protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812LAW2_9DINO)

HSP 1 Score: 73.9 bits (180), Expect = 3.870e-13
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRN--------------NAGEPILA-----VVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDL 354
            A A+A+GGM  A  GA+  A    + LKL +G+L +AV+PL+PL+  FS++              +  E ILA         + D     KM  +G  +GFL+G+FGVGGG +TVPAI+L+T L
Sbjct:  119 ALAIALGGMIFARAGAKLMANTDAARLKLYMGMLQVAVSPLIPLKAHFSKSRPATEEKRVEAPCVDGSESILAGSEARAGHGVFDAERFAKMFVVGSLAGFLSGMFGVGGGALTVPAIALSTSL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLQ9_9PHAE7.400e-2346.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHF4_ECTSI2.090e-2143.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0C0G1_9STRA1.020e-1946.61Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
B7G9A3_PHATC6.780e-1846.34Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1CXT3_CYCTE5.100e-1644.04Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S1VQG5_9STRA7.780e-1544.86Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4VM12_9STRA1.250e-1442.98Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A836CP97_9STRA2.720e-1439.85Sulfite exporter TauE/SafE-domain-containing prote... [more]
A0A7S4EEL0_9STRA9.390e-1440.18Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A812LAW2_9DINO3.870e-1339.52YunE protein n=1 Tax=Symbiodinium natans TaxID=878... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21783contigH-paniculata_contig21783:3511..4297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D8LHF4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs2AJRJ@1,2RZ7R@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size360
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21783.5758.1prot_H-paniculata_contig21783.5758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21783 3520..4297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.0866964-UTR-H-paniculata_contig21783:3510..35191622929594.0866964-UTR-H-paniculata_contig21783:3510..3519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21783 3511..3519 +
1691480927.8283105-UTR-H-paniculata_contig21783:3510..35191691480927.8283105-UTR-H-paniculata_contig21783:3510..3519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21783 3511..3519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.1037905-CDS-H-paniculata_contig21783:3519..37361622929594.1037905-CDS-H-paniculata_contig21783:3519..3736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21783 3520..3736 +
1691480927.8396177-CDS-H-paniculata_contig21783:3519..37361691480927.8396177-CDS-H-paniculata_contig21783:3519..3736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21783 3520..3736 +
1622929594.1181052-CDS-H-paniculata_contig21783:4163..42971622929594.1181052-CDS-H-paniculata_contig21783:4163..4297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21783 4164..4297 +
1691480927.8485243-CDS-H-paniculata_contig21783:4163..42971691480927.8485243-CDS-H-paniculata_contig21783:4163..4297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21783 4164..4297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21783.5758.1

>prot_H-paniculata_contig21783.5758.1 ID=prot_H-paniculata_contig21783.5758.1|Name=mRNA_H-paniculata_contig21783.5758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MNHYFPCRSAATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAP
LLPLRDSFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVG
GGVVTVPAISLTTDLSH
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mRNA from alignment at H-paniculata_contig21783:3511..4297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21783.5758.1 ID=mRNA_H-paniculata_contig21783.5758.1|Name=mRNA_H-paniculata_contig21783.5758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=787bp|location=Sequence derived from alignment at H-paniculata_contig21783:3511..4297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTGGACAATGAACCATTATTTCCCGTGCCGCAGTGCGGCCACCGCAAT GGCAATCGGCGGTATGGCAGGGGCGCACGTGGGCGCTAGAGCAACAGCAA GAATCAGCCCTTCAATTCTCAAGTTAGCCTTAGGGGTGCTCATGATTGCG GTAGCGCCGCTTCTGCCCCTGCGGGACAGCTTTTCGCGGAACAACGCCGG TGAGCCAATTCTGGCGGTAGTTTTTCGTTTGGATTCATCGGACCCCGTCT GCACATATCGTTAGTTCTTCGAACCGATCTGCAGATACTGCATATTTCTA GAAGCGGTCTGCACATATTGATGATTCTTCAAACCGGTCCGCAGATCCCG CAGAGTCTCTGGACCAGTCTGCACATGTTGCGGATTCTCCGAATCGAGAC GAAGATCCCGAAGATTCTCCGGAACGATCTGGGACAGGAGATCATGATTC GTCGGCAGCCAGAGTGGAGGAAAAACGATCTCCGACAATTTCTTCCGTAA AATCAAAGGCCCTGCAGAAGGGTGAAGTCGGACCGATTCGTGGAACAGAT AGTGGACCGCATCACGGAACGGCACCGAACTTCGCGAACTCATCGTTGTC ATTGAGTGAGGGGGAAAACGGCAATGCATTGATCGAAGGCGCAGACTGTG TAGCGATTCCTGACCTGTCAATGGTGCTAAAGATGTCCGCGATCGGGCTT GGGAGCGGGTTTTTAGCAGGTGTTTTTGGCGTTGGGGGGGGCGTCGTAAC CGTCCCTGCGATATCGCTGACTACGGATTTAAGCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig21783:3511..4297+

>mRNA_H-paniculata_contig21783.5758.1 ID=mRNA_H-paniculata_contig21783.5758.1|Name=mRNA_H-paniculata_contig21783.5758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig21783:3511..4297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCATTATTTCCCGTGCCGCAGTGCGGCCACCGCAATGGCAATCGG
CGGTATGGCAGGGGCGCACGTGGGCGCTAGAGCAACAGCAAGAATCAGCC
CTTCAATTCTCAAGTTAGCCTTAGGGGTGCTCATGATTGCGGTAGCGCCG
CTTCTGCCCCTGCGGGACAGCTTTTCGCGGAACAACGCCGGTGAGCCAAT
TCTGGCGGTAGTTTTTCATGAACCATTATTTCCCGTGCCGCAGTGCGGCC
ACCGCAATGGCAATCGGCGGTATGGCAGGGGCGCACGTGGGCGCTAGAGC
AACAGCAAGAATCAGCCCTTCAATTCTCAAGTTAGCCTTAGGGGTGCTCA
TGATTGCGGTAGCGCCGCTTCTGCCCCTGCGGGACAGCTTTTCGCGGAAC
AACGCCGGTGAGCCAATTCTGGCGGTAGTTTTTCCGATTCCTGACCTGTC
AATGGTGCTAAAGATGTCCGCGATCGGGCTTGGGAGCGGGTTTTTAGCAG
GTGTTTTTGGCGTTGGGGGGGGCGTCGTAACCGTCCCTGCGATATCGCTG
ACTACGGATTTAAGCCACCGATTCCTGACCTGTCAATGGTGCTAAAGATG
TCCGCGATCGGGCTTGGGAGCGGGTTTTTAGCAGGTGTTTTTGGCGTTGG
GGGGGGCGTCGTAACCGTCCCTGCGATATCGCTGACTACGGATTTAAGCC
AC
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