prot_H-paniculata_contig2177.5753.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2177.5753.1
Unique Nameprot_H-paniculata_contig2177.5753.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length237
Homology
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 1.190e-110
Identity = 176/236 (74.58%), Postives = 191/236 (80.93%), Query Frame = 0
Query:    1 MKATVASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGT---SGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPYT 233
            MK T+AS AA    A AF AP PM  AA R+    +SM A S +IPFMPQPE LDG+M GD+GFDPLGLS I+IDFSEFIVPGAAVMR+EG    S VDTLYWMREAELKHGRVAQLAVVGWILVDQG RFPG QY++I+ SV AHDPMVA+GNMTLLL VVF+LEM+GGAAIFGAA GSGR PGDFGLDP  LT    KKARYEL+EI HCRLAM AI GI TQAVLNGG FPYT
Sbjct:    1 MKTTLASLAALVGGACAFTAPMPMHRAA-RSPAGALSM-ANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYT 234          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 238 bits (607), Expect = 6.270e-76
Identity = 133/220 (60.45%), Postives = 161/220 (73.18%), Query Frame = 0
Query:   15 ASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMR--DEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 232
            ASAF A +P++ A    + S MSM AKS SIPF PQP  LDGS+ GDVGFDPLGL++I+ D++++IVP  A MR  DE    VDTLYWMREAELKH RVA LAVVGW+ VD G R PG++Y  + S++ AHD MV+ GNM ++L    +LE+I GAAIF AA+GSGR PGDF LDP  L + S K ARY+LSE+ + RLAM A SGI TQAVL G SFPY
Sbjct:   14 ASAFQAASPLKGAV--RSSSSMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLTSIDFDWAKWIVPARASMRKGDEPLV-VDTLYWMREAELKHCRVAMLAVVGWLAVDMGLRLPGTKYMGL-SAISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPY 229          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A7S2RV11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV11_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.290e-62
Identity = 121/231 (52.38%), Postives = 156/231 (67.53%), Query Frame = 0
Query:    5 VASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSA-KSASIPFMPQPEKLDGSMAGDVGFDPLGLSNIN-IDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKA-RYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 232
            VA   AF  +A AF AP     AA RAA+   +M+A KSA++PFMP+P  LDGSM GDVGFDPLG S+I+ +   + I P A++   E    + TLYWMREAELKHGR+  LAV G+  VD G+RFPG++Y+ + +SV AHD MVA+GNM  L   V ++E+I   A+  AA+GSGR PGDF LDP   T+K++K+  R  L+E+ H RLAM A SG+ TQAV  G  FPY
Sbjct:    4 VALLLAFLGSAVAF-AP-----AARRAARLTTTMAAEKSAALPFMPKPSALDGSMPGDVGFDPLGFSSIDPVKLPQIIPPAASMATSEP---LPTLYWMREAELKHGRICMLAVTGFAAVDMGFRFPGAKYADL-TSVTAHDAMVASGNMGFLFLAVALIELISSVALVEAAQGSGRVPGDFALDPMKFTQKNEKETERLRLAEVTHARLAMLAFSGMVTQAVAVGDKFPY 224          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 188 bits (477), Expect = 6.490e-56
Identity = 111/217 (51.15%), Postives = 141/217 (64.98%), Query Frame = 0
Query:   24 MRTAAPRAAKSGMS-MSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSD-KKARYELSEIAHCRLAMFAISGICTQAVLNGGS-FPY--TVP 235
            ++ + PR   SG S +  KS S+PF+  P  LDGS AGD+GFDPL LS I  DFS+ +VP     R    + + TLYWMREAE+KHGRVA LAV+G + VD G R PG+ ++ +  ++ AHD MVA G M LLL      E++GGAA++ AAKGSGR PGDF LDPF L +    +K  ++  EI + RLAM  ISGI TQA L G S FPY  T+P
Sbjct:   23 IKASEPRRISSGPSALHLKSKSLPFLDAPGSLDGSFAGDIGFDPLRLSEIPFDFSQLVVPRQFSGRPSSAT-LATLYWMREAEVKHGRVAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYLHTIP 238          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 188 bits (478), Expect = 7.780e-56
Identity = 119/260 (45.77%), Postives = 148/260 (56.92%), Query Frame = 0
Query:    5 VASFAAFFATASAFMAPTPM-RTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNI-NIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSD-KKARYELSEIAHCR-----------------------------LAMFAISGICTQAVLNGGSFPY 232
            +A  A   A A+AF AP    RT     A+ GMS S     +PF+   + LDG+M GD  FDP+G SNI + D+S  +VP      ++   G+ TLYWMREAELKHGR+  LA +GW+  D G+RFPG  YS I S++ AHD MV  GNM  LL V+F++E++ GAAI+ AAKGSGRAPGD+G DP  L   +D KKA Y L EI + R                             LAM   SGI TQA L G SFPY
Sbjct:   24 LACLALAIAGAAAFQAPRKAGRTPVRMQAREGMSKS-----VPFLKTNKNLDGTMVGDADFDPMGWSNIEDFDWSGIVVPA---WFNKEREGISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGI-STLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.060e-54
Identity = 104/223 (46.64%), Postives = 144/223 (64.57%), Query Frame = 0
Query:   10 AFFATASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 232
            AF    +A M+   +  +AP+A ++   ++AKS ++PF+  P+ LDGS+  DVGFDPL LS+I+ DF+  +VP      DE  +G+  L W REAE+KHGR A LAV+GW+ VD G R P ++Y+   ++V AHD  V +G+MT+ L  +  LE++ GA I+  +KGS RA GDF  DP  L +   K ARY++SEI + RLAM A  GI TQAVL  G FPY
Sbjct:    5 AFIVATTAAMSTAFVLPSAPKAPQT--QLAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVP---TKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGY-NAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.830e-52
Identity = 115/238 (48.32%), Postives = 139/238 (58.40%), Query Frame = 0
Query:    1 MKATVASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSA-KSASIPFMPQPEKLDGSMAGDVGFDPLGLSN-INIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYL---TEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPYT 233
            M  T+A   A  A+ASAF+ P  +   A  ++ SGMSM A KS S+PFMPQP KLDG+MAGD GFDPLG SN I +DF                        +REAELKHGR+ QLAVVG+   D G+R PG++++   +S+ AHD  VA G M  +L  V   E I   A+    +GSGR PGDFG DP  L    E + KKA  EL EI HCRLAM A  G+ TQAVL    FPYT
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRVA--SSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDF------------------------LREAELKHGRICQLAVVGFAATDLGFRLPGAEHA--VASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYT 210          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 172 bits (436), Expect = 3.060e-50
Identity = 91/193 (47.15%), Postives = 126/193 (65.28%), Query Frame = 0
Query:   40 AKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 232
            AKS S+PF+  P  LDG++ GDVGFDPL  ++++ + +E I+P  ++     T  +  +YWMREAELKHGR+  LA+VG++ VD G  FPG++Y  + SS+ AHD MVA+GNM  +L  V +LE++    +  AAKGSGR  GDF  DP Y T+ +     +E +EI H RLAM A SG+ TQ+ L    FPY
Sbjct:   30 AKSKSMPFLECPAALDGTLPGDVGFDPLRFTDLDWNMAEVIIPAKSI---SATESLPMVYWMREAELKHGRLCMLAIVGYLTVDAGIHFPGARYEGL-SSLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A7S1Y167_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y167_9STRA)

HSP 1 Score: 167 bits (424), Expect = 4.730e-48
Identity = 97/203 (47.78%), Postives = 119/203 (58.62%), Query Frame = 0
Query:   61 DVGFDPLGLSNI-NIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSD-KKARYELSEIAHCR-----------------------------LAMFAISGICTQAVLNGGSFPY 232
            D  FDP+G SNI + D+S  +VP      ++   G+ TLYWMREAELKHGR+  LA +GW+  D G+RFPG  YS I S++ AHD MV  GNM  LL V+F++E++ GAAI+ AAKGSGRAPGD+G DP  L   +D KKA Y L EI + R                             LAM   SGI TQA L G SFPY
Sbjct:   49 DADFDPMGWSNIEDFDWSGIVVPA---WFNKEREGISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGI-STLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 247          
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: B8BU32_THAPS (Fucoxanthin chlorophyll a/c protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU32_THAPS)

HSP 1 Score: 166 bits (421), Expect = 1.580e-47
Identity = 97/204 (47.55%), Postives = 128/204 (62.75%), Query Frame = 0
Query:   41 KSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGW-----RFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKG-SGRAPGDFGLDPF-YLTEKSDKKAR-YELSEIAHCRLAMFAISGICTQAVLNGGSFPYTVPY 236
            +SAS+PF+P+P  LDGS  GDVGFDP  LS+I+ +F+ FI P +     E T+G+ TLYWMREAELKHGRVA LA  GW+  D        RFPG+ Y ++ +S+ AHD MV  G++  +L  + I+E+     +   +KG S RA GDF LDP  +L  KSD      +L E+ + R AM A +G+ TQA L G  FPY VPY
Sbjct:   47 RSASMPFLPRPINLDGSYVGDVGFDPFYLSSIDKNFAGFIQPPSW----EETNGLPTLYWMREAELKHGRVAMLAWTGWLATDGALGPVPLRFPGAAYQAVPNSLSAHDIMVDQGSLGFMLVAIGIIEVCCATVLVEVSKGESDRAAGDFKLDPLQFLKGKSDADINTMKLKELQNGRAAMMAFAGVVTQAALGGTDFPYLVPY 246          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3A4_ECTSI1.190e-11074.58Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CGA6_9STRA6.270e-7660.45Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2RV11_9STRA2.290e-6252.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1NRI4_HETAK6.490e-5651.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4L863_9STRA7.780e-5645.77Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7UAI7_9STRA1.060e-5446.64Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
D7FWB9_ECTSI3.830e-5248.32Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
F0YCE3_AURAN3.060e-5047.15Uncharacterized protein LHC26 n=1 Tax=Aureococcus ... [more]
A0A7S1Y167_9STRA4.730e-4847.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
B8BU32_THAPS1.580e-4747.55Fucoxanthin chlorophyll a/c protein n=1 Tax=Thalas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 45..234
e-value: 1.4E-35
score: 124.8
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 51..223
e-value: 4.5E-33
score: 115.1
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 13..233
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTICcoord: 13..233
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 175..236
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..153
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.575
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 34..227
NoneNo IPR availableTMHMMTMhelixcoord: 152..174
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2177contigH-paniculata_contig2177:12102..19565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2177.5753.1mRNA_H-paniculata_contig2177.5753.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2177 12102..20172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2177.5753.1 ID=prot_H-paniculata_contig2177.5753.1|Name=mRNA_H-paniculata_contig2177.5753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
MKATVASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQ
PEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYW
MREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAG
NMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKAR
YELSEIAHCRLAMFAISGICTQAVLNGGSFPYTVPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln