mRNA_H-paniculata_contig2177.5753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2177.5753.1
Unique NamemRNA_H-paniculata_contig2177.5753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 1.220e-107
Identity = 176/236 (74.58%), Postives = 191/236 (80.93%), Query Frame = 1 
Query:    1 MKATVASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGT---SGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPYT 699
            MK T+AS AA    A AF AP PM  AA R+    +SM A S +IPFMPQPE LDG+M GD+GFDPLGLS I+IDFSEFIVPGAAVMR+EG    S VDTLYWMREAELKHGRVAQLAVVGWILVDQG RFPG QY++I+ SV AHDPMVA+GNMTLLL VVF+LEM+GGAAIFGAA GSGR PGDFGLDP  LT    KKARYEL+EI HCRLAM AI GI TQAVLNGG FPYT
Sbjct:    1 MKTTLASLAALVGGACAFTAPMPMHRAA-RSPAGALSM-ANSKAIPFMPQPENLDGTMPGDIGFDPLGLSKIDIDFSEFIVPGAAVMREEGVPSKSPVDTLYWMREAELKHGRVAQLAVVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYT 234
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 238 bits (608), Expect = 3.360e-73
Identity = 133/220 (60.45%), Postives = 161/220 (73.18%), Query Frame = 1 
Query:   43 ASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMR--DEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 696
            ASAF A +P++ A    + S MSM AKS SIPF PQP  LDGS+ GDVGFDPLGL++I+ D++++IVP  A MR  DE    VDTLYWMREAELKH RVA LAVVGW+ VD G R PG++Y  + S++ AHD MV+ GNM ++L    +LE+I GAAIF AA+GSGR PGDF LDP  L + S K ARY+LSE+ + RLAM A SGI TQAVL G SFPY
Sbjct:   14 ASAFQAASPLKGAV--RSSSSMSMMAKSKSIPFAPQPAALDGSLPGDVGFDPLGLTSIDFDWAKWIVPARASMRKGDEPLV-VDTLYWMREAELKHCRVAMLAVVGWLAVDMGLRLPGTKYMGL-SAISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPY 229
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A7S2RV11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV11_9STRA)

HSP 1 Score: 204 bits (518), Expect = 8.150e-60
Identity = 121/231 (52.38%), Postives = 156/231 (67.53%), Query Frame = 1 
Query:   13 VASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSA-KSASIPFMPQPEKLDGSMAGDVGFDPLGLSNIN-IDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKA-RYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 696
            VA   AF  +A AF AP     AA RAA+   +M+A KSA++PFMP+P  LDGSM GDVGFDPLG S+I+ +   + I P A++   E    + TLYWMREAELKHGR+  LAV G+  VD G+RFPG++Y+ + +SV AHD MVA+GNM  L   V ++E+I   A+  AA+GSGR PGDF LDP   T+K++K+  R  L+E+ H RLAM A SG+ TQAV  G  FPY
Sbjct:    4 VALLLAFLGSAVAF-AP-----AARRAARLTTTMAAEKSAALPFMPKPSALDGSMPGDVGFDPLGFSSIDPVKLPQIIPPAASMATSEP---LPTLYWMREAELKHGRICMLAVTGFAAVDMGFRFPGAKYADL-TSVTAHDAMVASGNMGFLFLAVALIELISSVALVEAAQGSGRVPGDFALDPMKFTQKNEKETERLRLAEVTHARLAMLAFSGMVTQAVAVGDKFPY 224
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 189 bits (479), Expect = 1.310e-53
Identity = 111/217 (51.15%), Postives = 141/217 (64.98%), Query Frame = 1 
Query:   70 MRTAAPRAAKSGMS-MSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSD-KKARYELSEIAHCRLAMFAISGICTQAVLNGGS-FPY--TVP 705
            ++ + PR   SG S +  KS S+PF+  P  LDGS AGD+GFDPL LS I  DFS+ +VP     R    + + TLYWMREAE+KHGRVA LAV+G + VD G R PG+ ++ +  ++ AHD MVA G M LLL      E++GGAA++ AAKGSGR PGDF LDPF L +    +K  ++  EI + RLAM  ISGI TQA L G S FPY  T+P
Sbjct:   23 IKASEPRRISSGPSALHLKSKSLPFLDAPGSLDGSFAGDIGFDPLRLSEIPFDFSQLVVPRQFSGRPSSAT-LATLYWMREAEVKHGRVAMLAVLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYLHTIP 238
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.220e-53
Identity = 119/260 (45.77%), Postives = 148/260 (56.92%), Query Frame = 1 
Query:   13 VASFAAFFATASAFMAPTPM-RTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNI-NIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSD-KKARYELSEIAHCR-----------------------------LAMFAISGICTQAVLNGGSFPY 696
            +A  A   A A+AF AP    RT     A+ GMS S     +PF+   + LDG+M GD  FDP+G SNI + D+S  +VP      ++   G+ TLYWMREAELKHGR+  LA +GW+  D G+RFPG  YS I S++ AHD MV  GNM  LL V+F++E++ GAAI+ AAKGSGRAPGD+G DP  L   +D KKA Y L EI + R                             LAM   SGI TQA L G SFPY
Sbjct:   24 LACLALAIAGAAAFQAPRKAGRTPVRMQAREGMSKS-----VPFLKTNKNLDGTMVGDADFDPMGWSNIEDFDWSGIVVPA---WFNKEREGISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGI-STLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.800e-52
Identity = 104/223 (46.64%), Postives = 144/223 (64.57%), Query Frame = 1 
Query:   28 AFFATASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 696
            AF    +A M+   +  +AP+A ++   ++AKS ++PF+  P+ LDGS+  DVGFDPL LS+I+ DF+  +VP      DE  +G+  L W REAE+KHGR A LAV+GW+ VD G R P ++Y+   ++V AHD  V +G+MT+ L  +  LE++ GA I+  +KGS RA GDF  DP  L +   K ARY++SEI + RLAM A  GI TQAVL  G FPY
Sbjct:    5 AFIVATTAAMSTAFVLPSAPKAPQT--QLAAKSKAVPFLEAPKALDGSLPADVGFDPLNLSDIDFDFTYLMVP---TKWDESRTGLSALKWFREAEIKHGRFAMLAVLGWVAVDMGLRLPVAKYAGY-NAVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 8.930e-50
Identity = 115/238 (48.32%), Postives = 139/238 (58.40%), Query Frame = 1 
Query:    1 MKATVASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSA-KSASIPFMPQPEKLDGSMAGDVGFDPLGLSN-INIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYL---TEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPYT 699
            M  T+A   A  A+ASAF+ P  +   A  ++ SGMSM A KS S+PFMPQP KLDG+MAGD GFDPLG SN I +DF                        +REAELKHGR+ QLAVVG+   D G+R PG++++   +S+ AHD  VA G M  +L  V   E I   A+    +GSGR PGDFG DP  L    E + KKA  EL EI HCRLAM A  G+ TQAVL    FPYT
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRVA--SSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDF------------------------LREAELKHGRICQLAVVGFAATDLGFRLPGAEHA--VASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYT 210
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BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 172 bits (437), Expect = 6.540e-48
Identity = 91/193 (47.15%), Postives = 126/193 (65.28%), Query Frame = 1 
Query:  118 AKSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKARYELSEIAHCRLAMFAISGICTQAVLNGGSFPY 696
            AKS S+PF+  P  LDG++ GDVGFDPL  ++++ + +E I+P  ++     T  +  +YWMREAELKHGR+  LA+VG++ VD G  FPG++Y  + SS+ AHD MVA+GNM  +L  V +LE++    +  AAKGSGR  GDF  DP Y T+ +     +E +EI H RLAM A SG+ TQ+ L    FPY
Sbjct:   30 AKSKSMPFLECPAALDGTLPGDVGFDPLRFTDLDWNMAEVIIPAKSI---SATESLPMVYWMREAELKHGRLCMLAIVGYLTVDAGIHFPGARYEGL-SSLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217
[Close]
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: A0A7S1Y167_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y167_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.240e-46
Identity = 97/203 (47.78%), Postives = 119/203 (58.62%), Query Frame = 1 
Query:  181 DVGFDPLGLSNI-NIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSD-KKARYELSEIAHCR-----------------------------LAMFAISGICTQAVLNGGSFPY 696
            D  FDP+G SNI + D+S  +VP      ++   G+ TLYWMREAELKHGR+  LA +GW+  D G+RFPG  YS I S++ AHD MV  GNM  LL V+F++E++ GAAI+ AAKGSGRAPGD+G DP  L   +D KKA Y L EI + R                             LAM   SGI TQA L G SFPY
Sbjct:   49 DADFDPMGWSNIEDFDWSGIVVPA---WFNKEREGISTLYWMREAELKHGRICMLATLGWVATDLGFRFPGEAYSGI-STLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 247
[Close]
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Match: B8BU32_THAPS (Fucoxanthin chlorophyll a/c protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU32_THAPS)

HSP 1 Score: 167 bits (423), Expect = 2.160e-45
Identity = 97/204 (47.55%), Postives = 128/204 (62.75%), Query Frame = 1 
Query:  121 KSASIPFMPQPEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYWMREAELKHGRVAQLAVVGWILVDQGW-----RFPGSQYSSIASSVVAHDPMVAAGNMTLLLGVVFILEMIGGAAIFGAAKG-SGRAPGDFGLDPF-YLTEKSDKKAR-YELSEIAHCRLAMFAISGICTQAVLNGGSFPYTVPY 708
            +SAS+PF+P+P  LDGS  GDVGFDP  LS+I+ +F+ FI P +     E T+G+ TLYWMREAELKHGRVA LA  GW+  D        RFPG+ Y ++ +S+ AHD MV  G++  +L  + I+E+     +   +KG S RA GDF LDP  +L  KSD      +L E+ + R AM A +G+ TQA L G  FPY VPY
Sbjct:   47 RSASMPFLPRPINLDGSYVGDVGFDPFYLSSIDKNFAGFIQPPSW----EETNGLPTLYWMREAELKHGRVAMLAWTGWLATDGALGPVPLRFPGAAYQAVPNSLSAHDIMVDQGSLGFMLVAIGIIEVCCATVLVEVSKGESDRAAGDFKLDPLQFLKGKSDADINTMKLKELQNGRAAMMAFAGVVTQAALGGTDFPYLVPY 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2177.5753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3A4_ECTSI1.220e-10774.58Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CGA6_9STRA3.360e-7360.45Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S2RV11_9STRA8.150e-6052.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1NRI4_HETAK1.310e-5351.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4L863_9STRA2.220e-5345.77Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7UAI7_9STRA2.800e-5246.64Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
D7FWB9_ECTSI8.930e-5048.32Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
F0YCE3_AURAN6.540e-4847.15Uncharacterized protein LHC26 n=1 Tax=Aureococcus ... [more]
A0A7S1Y167_9STRA9.240e-4647.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
B8BU32_THAPS2.160e-4547.55Fucoxanthin chlorophyll a/c protein n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2177contigH-paniculata_contig2177:12102..20172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.6
Seed ortholog evalue2.5e-87
Seed eggNOG ortholog2880.D7G3A4
Preferred nameLhcr11
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2DDP1@1,2S5ND@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-07_005670.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1318
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2177.5753.1prot_H-paniculata_contig2177.5753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2177 12102..19565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.6516397-CDS-H-paniculata_contig2177:12101..123351622929593.6516397-CDS-H-paniculata_contig2177:12101..12335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 12102..12335 +
1691480927.6045673-CDS-H-paniculata_contig2177:12101..123351691480927.6045673-CDS-H-paniculata_contig2177:12101..12335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 12102..12335 +
1622929593.6727097-CDS-H-paniculata_contig2177:13757..138691622929593.6727097-CDS-H-paniculata_contig2177:13757..13869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 13758..13869 +
1691480927.6187937-CDS-H-paniculata_contig2177:13757..138691691480927.6187937-CDS-H-paniculata_contig2177:13757..13869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 13758..13869 +
1622929593.6899927-CDS-H-paniculata_contig2177:17608..178061622929593.6899927-CDS-H-paniculata_contig2177:17608..17806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 17609..17806 +
1691480927.6287959-CDS-H-paniculata_contig2177:17608..178061691480927.6287959-CDS-H-paniculata_contig2177:17608..17806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 17609..17806 +
1622929593.7105844-CDS-H-paniculata_contig2177:19398..195651622929593.7105844-CDS-H-paniculata_contig2177:19398..19565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 19399..19565 +
1691480927.638598-CDS-H-paniculata_contig2177:19398..195651691480927.638598-CDS-H-paniculata_contig2177:19398..19565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2177 19399..19565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.7267597-UTR-H-paniculata_contig2177:19565..201721622929593.7267597-UTR-H-paniculata_contig2177:19565..20172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2177 19566..20172 +
1691480927.6520095-UTR-H-paniculata_contig2177:19565..201721691480927.6520095-UTR-H-paniculata_contig2177:19565..20172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2177 19566..20172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2177.5753.1

>prot_H-paniculata_contig2177.5753.1 ID=prot_H-paniculata_contig2177.5753.1|Name=mRNA_H-paniculata_contig2177.5753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
MKATVASFAAFFATASAFMAPTPMRTAAPRAAKSGMSMSAKSASIPFMPQ
PEKLDGSMAGDVGFDPLGLSNINIDFSEFIVPGAAVMRDEGTSGVDTLYW
MREAELKHGRVAQLAVVGWILVDQGWRFPGSQYSSIASSVVAHDPMVAAG
NMTLLLGVVFILEMIGGAAIFGAAKGSGRAPGDFGLDPFYLTEKSDKKAR
YELSEIAHCRLAMFAISGICTQAVLNGGSFPYTVPY*
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mRNA from alignment at H-paniculata_contig2177:12102..20172+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2177.5753.1 ID=mRNA_H-paniculata_contig2177.5753.1|Name=mRNA_H-paniculata_contig2177.5753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8071bp|location=Sequence derived from alignment at H-paniculata_contig2177:12102..20172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCTACCGTTGCTTCGTTCGCTGCGTTCTTTGCTACTGCGTCTGC
ATTCATGGCCCCTACCCCGATGCGCACAGCAGCCCCACGGGCTGCGAAAA
GTGGGATGAGCATGTCTGCGAAAAGCGCGTCCATCCCCTTCATGCCTCAA
CCCGAGAAGTTGGATGGGAGCATGGCCGGGGATGTTGGATTCGACCCTCT
TGGTTTGTCCAATATTAACATCGACTTTAGCGAGGTATGTACGGTTGTGT
GTACCGGCTCTGCCGTTATAGGGTGGCATGAGACGTGTGAACATTGCAGC
AAAGTCTTGAAAGTCGAGAGTGGTGCAAAATAGACATCTTGGACTCCCAA
GTCGGCTCAGTACAGACAGCACATAACAGTCATATTATTTAGTATGTTGA
CAGTACGGCTAGTGTGGTGCGGATAACAAGGGTGTAAGTCAATCAGCCCA
GTGAACCTTCACGCCGAAAATCGAAACGCCCAGAGAGACAAATCGTTCAT
CTCATGAGTTGTCCTTGCCTCACGTCCGAGGTGACCTTCTTGAACTACTT
GACCTTGTTTCAGCATGATCTGGTGTGTCTTGTTTCATGATGGAGAGGAT
TCGGGCCATCTTGTCGTGTGTCGCGCATTTGGGTCAATATGTTGCGATTT
GTCAGCGTGCAGTTTGCCCCACCAGAAACACTATCACCATATCACAGGGC
AACGTTATTCTTCGACTTGATTCGGGGGATGATATTTTCGGTCAACAGTG
TCCTCCATAATGGCGAAACCTTCCCATGGCTCTTTTCTGTTGTATCCTTA
ATTACCGTCATGTACACGTCATCGGTTTGTCCAGAAAATTAACACAGAAA
CAGAGTCATGAAAAAGCGGAGATTTGTTCCTCAGTTTTAAAATGGAAGTG
GGCCATGATCGCATGCTATTAACGGTTTTTGAAGTCCAGGTCTCATATGC
ATATTGGACAATATGCCCAAGTCGGGTAATTCGTCTCGATGTAACTTGTT
ATGTTCACCATCTACCCGCCATACCCTTGTCACAGAGCGTCAATTTATGG
TCTGTGGTAAAGACGGTCAAATCTAGAGACGAGATGAAGGGGCTAAGGAC
TCACGATGCTCCTGATTTTACTGACTGTCTCGTTCTCGCGTAGGTGAGGA
CTTGACACCGCTAAACATAACAGTATTTTTTCAAGTTCTGTCTGTCAATC
TCTCCACGCCAAAAGACACAACAATTCAACAAAAAAGACAGGTTCATTAA
TTATGACCAACGACATCAAGCATTGCACGTGTGGAAATGTTTTTCGCTCT
TGATAAAGGCCCTTCTAGGGTGCGGTTCATGACACGCTCTTGTATAAACG
ACGGTACTTGTCATATAAATATTGGTGCCTCCTATGGCGTTTCACGATTG
GACCAGGGCGTTTCGAATTGGTTGCCCTCTTTTCATGTTGTCGTTGAGGA
ACTTCGTGTTCCAAATCTGGTTCTCGTGGTGCAACAATGCAACGAAATAG
CGCAACAAGTAACAAGTAACAGTCATATGTAGAATATCACATGCTATCAT
AAGCAGCCCTTTGTTCAAACTGACTGTACTGAGAGAAGCCCTGTGTGAAA
GATATAATTTTTTGTTTCCCTTATCCTATTTCGGCTGTCGTTTATATTTG
CTCAAGTTCATCGTGCCTGGGGCGGCTGTAATGCGCGACGAGGGCACCTC
CGGCGTGGACACCCTGTATTGGATGCGTGAAGCGGAGCTCAAGCACGGGC
GTGTTGCCCAGTTGGCGGGTACGTGTATCATGTCTCACGGTAGAAAAAGA
GGACTTACTTGTATGTAGCTAGTGGGTCGTGAAAAGTTGTTACATGATGA
GTCAAGCGAGGAAATCGCGGAAATCATGTTGGCGCGCACGCACTCCCAGA
GGGTATGTGTTGCAGAAACGTTGGCATCGATTTTATTGACACTTCTCTCC
CGTTGCAATTTATACTTTAGTGCACCGACATCCTGAGAGTGTGCCGTTTT
GGGAATGCAGCTGAATCCGTTGGTACCCTTGCAGCCTCCACATATACCCC
TCGTGCAATGTTTTTTTGCTTGAAACCTCAGTGTAAGTAAACACCCATGT
ACAAACTCCCTCTTGACGCGAAACACAAAAAAGGAATGTTTCTTTATCGA
TAAAAAAAATGTGTTGACCCCACTTACCAGGTACTATCCTGGGGGCTTTT
CCGACTTTTTCGTGACTTGCACACCATGTTTTTCTTGGCCGTGATCGTGG
AATCCTACGCATACATGCACCACACCCCGTGAACGAAAACGGGTGAAGAT
GGGAGGTTACTTTCGCCTTTGGCCATTTGAAGGAGTCTCGGGAAAACGGA
GAAATTTCTCTCGAAAAGTCCTCTCGATAACTTGTGCTACGTCTTTTTTC
AGGGCGAAATTGGCGACGAAAAAATCTCGCGAACAATTCACGATAAGATG
TGGTCTGCAACAAAATCTCTGTACTCCGCAAGAAGGCTGCAAGCAGTCAC
ACTTTGTTCCTTCGGTTGGCGAGTCCGTCACCGAACGTACCTCAGTTTCG
GCGGAAACTTTCTTTCTCTGTTTCCCTGCAGTGCTGCACGAGCCCGTGCC
CTCATGTATTCCCTAGCTGCTGCACTGAGGAAGTGCAGACGCGTATGGCA
TTCGGTTGATGCCGTAAAGGCTTGATTTTCGCAAACGTCAATGGAGCTAA
GCTAGGCAGTTGGGAAATTAGATCGTCTCGAGAATTGAGTGCCTGACGGG
TGTAAGGAATGACCTCACCGTGCGTACAGCATGCAAGCGGGGAAGTACGT
GTAACATGCCCCAGTACCCGACGTTGAACCTTGAAAATCGATTTTGGCTG
GGGAAAAGTATATCTTGCACACACCTGAGATCAATGGCTTGGCGGAACTA
TTTCGGTAGGTATGCGTCTCTGTCCAGGAACATTAGCGAAGCCGCCCCCG
CGAAGGTGATTTGCATGATGCCGGAATACTCGAGGAAAGGTACCAAATAG
CCCAAAGCAACGAGGGGGGAGGGGCGATCCTCGGGAAGAAATTCCCAATG
TACTTGTAAGCATACACTTTGAAGATACCGAATACTCTTCGATTACCACT
GATCTCCACCTAGAATGGGTGATTGGAAAGTCTAAGCGGTATTTAGGACC
TTCCTGGTGAAAAATTCCTGTGAAGCTTCTAAAGCGCACATGACGGAGGT
CCATGCCTGTGTCCTGTGCAGTGCATCGGAGTCGAGGTAGCAAGGGTGAT
TGAATGTCTTCATCCATAGTATCAAGTGAAAGCCGCGACAGCACAGGATG
CATCACGCCAGTATTTTTTTTGTTCGCGCTATACTCACTGCTGCCTCCTG
AGTCCGCCTCGAACCCACATTTTATGCCCCAACTTCAACAGAGGGAATGC
CGCAAACTTGTTGCAACTTGTGGAAGATATTTCTGAAGTTCGATAGTAAA
GCGTATAACCTGTGGCCTAGATTGGTCGCTGTCGATTGCAACAGTCTTGA
ATGTAGCCCGGCCCATTTCGCAGCCTTCTGATTGGAGCCACTGTTTCTGC
TATACTTTCTTCGGTTGGCTAGACCCTGTGTGGGGCATTAGACACGCACT
ATGTGATCGCGGCCGTAAATGGATCCTGTCTCTGTCCTTGTACCTTCTTT
CGGAGTAGACAGTTTGCCTAATAATAGGTGGACAGATCCGCATCCAACCT
ACCCTACAAATCACTGTAGGTGGACTATCACCTGCTCTTTCAAATGTGAC
ACCCATCTTTATCCATGCCTCAGATAATGCACTCTGCCGCACGAGCATAT
TTTAAGTCACGTCGAGAATTTCCAGGGTCGAAACTCCAAAATTCACAAGG
TATGTTTTTTTTCATAATAACAAAAAATTGACTGGTGAAAGTATCAATGT
AGGACCCACTGTCCCAAACACAAATAAATCGCCATCGCGAGGGCCCATGC
TGTTTTTTGTGGTCATCATGACAGCATTGCCTAAACACGTCAGTGTTTCA
AAAGTGTTATCAGAATATTGATCAATACTGCGGTTTTGAAAGGCATGCGG
TGCAGATCGTGCACAGGATGATCTCTGCAATAGAACATGGAGATTGGTGA
TATCACCATCATATGATGGAACTATGGCATACGTCGACTGATTTACTGCT
GAAAATCATGCACTGGGCATGGGACACTTGATATATCGGTGAAGCCGTAA
GCTGCATAACCCCCGAGATGTTGACTTTTTCTGGGAACTCTTGACCTTGG
CGAAATTTAGATGAATATAAAATCCATTTCGAGGGCTCGTCGTTTTAAGG
GGCTCCAGTGTCATCTTGGGTTGTGTCTTCTACAGTAAGTGTATTTGACC
ACATACGTTGCAGTGATGTCTTTAAACGGGTGTTTCGAAAGATATCGATA
ATCTTTAAAGCAAAGGCGTCGTATATTGATTCGGTAATCGGACGCGATAT
CCACGACGAAACCAGGAGTCGGTCTTGTTTCTCGAAGATCGAGTTGTTGA
TGGGGGGGATGACCCGGAGCATAATGATCATACTGTGTCTGAACAATGAC
TACTGCAGTACATATCGTGCTATAGGATTCGAGAGATCTAGCTTGATCCT
GTAAAAACCCGTGCGTGATCTTGGTTGAAAATAAATCAAAACCGGGCTCA
ACATCTTACTCCCTCTCGATTGTTTGGATCCCGTCTTGCCACTATTTCCT
CGTCCATCTCTTGATGAATTGGCAGTCTTGGAAATACCCATGTCATGCTT
TGATGATGTGACGTAACCATCTTGTCCCTTGGCATTATACAACGGCGTTT
CTGCTTTCAAGAAGCGAAGGATTTTCGTGTTACAGTTGACGTCGCTTTGG
GCTTGAGCCACCGGACCGATTATCAAGTATAGAGTGCTGAACTTGGGTGG
AAGTCGGTTGAAAAGGGGCTGCTGTAATGTGATAACCCTGAAAGCTCCTG
CACATGTTTTGGGTGTCTCCTGGACTTTACGCAATTGTGAGTAATGAAGA
GTTTTCGAATAGCCATAACTTGCTCCCTGCGAGCACTAATATGACAATAT
GTTTGTAAAAATCATGCGATCGCCATTTCGATACTGCAGTAGGAAGCTTG
ACATGAAAATGTGCTTGCTAACGTGAAGTTGCGTTTGAGGTTGCTATGAG
GTATGTAGAGTGTCATTAGTACTGTGAATACGTGCGTAGGATACAGACAA
CTGACCGTCGACGGCAAACGGAAACAGACGCACTCGTTCTGTTGACGATT
TCGTACTCTTTCTCTTGGTTCCCACAAGCAAGGGTTAGCTTGGAGGTAAG
TCGGAGTGCTTCAACGAAGCCATCCATTATGACATAGTAGGTGGAACCCT
GATCAGTCGATCGAAGATTGCAGAAGCTCTCTGTCACAGCCGGACGTTCC
CTTGCCATGAATTATTCGATAACGGAATAAACGTTACTCACGTTTGTAAC
TTTCTACCTTCGCTTGTTCATGTGTATGGCGCCTGTTGTGGACTCTAATG
AGCACAGTGGTGGGCTGGATCTTGGTGGACCAAGGATGGCGGTTTCCCGG
ATCGCAGTACTCATCTATTGCTAGCTCTGTCGTGGCGCACGACCCGATGG
TTGCCGCTGGAAACATGACGCTTCTTCTGGGTGTGGTCTTCATTCTGGAG
ATGATCGGTGGAGCTGCAATCTTTGGCGCAGCCAAGGGCTCAGGCCGCGC
TCCGGGTGAGTCTGCATTTTTCTGTGTACCGCTTGAGCTGTAAGTATGCC
AAGATTCGCGGTTGTGCTAATCCAGGTAGTATAACTAGCTGAGGTCCACG
GGAATGAGGTCGAGTGTAGGGCACGGTAACGAGGCTCTACTGAGCCGTAA
GCGTTTAATACAGTTGTAATTGCTCTTCACGATGTCAACTACATAACTCA
AGTACCATGTCAATAACCAATCGATACGGACTAAACGGTCGAATCACTAC
TAGACTGCGTAGGCATCAATTATGTAAGTTGTAATATATTTTAGAGCTTC
ACCTTCGACGTACAACGCGCGTAGAAAGAAAGTGTTGAATTTTGCGCATT
GCCACGGCAGACGGTCTAACGTGTTACAATCTACCGTTTAGAAATCGTTC
TCGGTTTGTCGCTATTTTTTATAGTATGTGCGTGTTGGTTGGGTAGCGTT
ATGATTTCCTCACATCTTGCCGTGGTGCTTGCAGTGTTTAGTAATTTATT
GTTGCAGTCGTGGAAGTAATGGTGATGTGAAGGCATGTAGGCGGGTCATA
CAGTTCAAGTAATATCAATTCTTCCCTCGGCAGTTGCGTACTAGGCGGCT
CTCGGGTAAAACGCCTTCGTCCTTCTTACGCGGTCGTCTCAACTTCTCGA
TTGGGGTTGAATGGTTAATCGAGTTTATGGAGGGGTTGCTGCGTTGTACA
CCCGTTCATGAACTGGTTTTTTACCAATCTGTGTACATCACAGCCTATGA
CCCACGGGAAGCAGTTCAAAAGCCCTTGCTTTCGAGTATGATGGAAGGAG
AGGGAACTGGAATGGTTTCATGTGTCAGGGATACTAGGTGTTTCTGAACT
AGATCATACCTCTGTGGTAGGAACAGATAAATGTAGATGTATAAAATTAA
TGGATAGGACAAAAAAAGCTCTTGTGTCCCCGGATTACGAAAAGCGAGCG
ATACCGATTCTAGGAGATGAAATTTGGTCTGAAATGGTGTGATTCGAGGT
GAATCACATGCAATATTTTTCACCCCCTGTCACGAATACTTGCAAATGAT
TTTCATGAAAAACTGAAAGTATTCGTCCGAGTTTCTGAAAAATCTGGACA
TACCTGAACCATCCACGATTGGAAATAATGTACCTGTAAATGGAATGGAC
AGGGGTGGGTACTTGACTTCATACGTCTGTTCATTCTGAAACTCAGGCGA
ATCCTCCTAGTTTTTTTTAACCATTAGCATTTGTATTATTTTCGGGGTGA
AATATTTTCAAGGTACGTTTATTAATCTAGGAAATAGCGATCAACCATCG
TAAATCACGCAAATTGGAACCAGGTTCCATCCTCCTCCCGAGGACGCGTT
TTTTAATCTTTGAACAACTACCGTATACAGAGTATCAGTACGCCCTGATA
TGTAAATGGTTATTTGTAAACTTTGTGTTTTCGTGCGTCCATCCTCATAT
TCGACATGTAGCTCCGGACCCCATTTTCATGCATCTTGATTACTGTCCTG
TAGTATGTTTCGATAAGTGAGACAAGTCAACTTCACACTTGAGCGTTGGG
TGTGGTAATTCTTGTACTTTACATTTTCCCTCGCTTGACTTGTTCAGGTG
ACTTTGGGCTGGACCCTTTCTACTTGACTGAGAAGTCTGACAAAAAGGCG
CGGTACGAATTGTCGGAGATTGCGCACTGCCGTCTCGCCATGTTTGCCAT
CTCCGGCATCTGCACGCAGGCGGTACTTAACGGCGGGAGCTTCCCGTACA
CTGTCCCATACTAGATTTTTTGTTGTTTCGTCGGGCTACTTATTTTCAAA
ATGTAGTTGAGTATGAGTGCCTTGCCCTGCACGGGGATGTATTTCTTGCG
CGAAGATTAAGCCTTGCTGTGACTCGTTCGCGTCTCAAGAGACATACAAA
CGATTGCTGCGGCACTGGCCAGACCTGTATCTGGGACATGATCAATACTA
CTGTACCACCGTCATGGGGGTGCAGTAGCGTGGTGCTTGTCTTCGACCAG
TTGGATTGTTTTTGGTAAAACATTTACTAGAGTGCTTCCAGTGGTGGGTG
AAATAGATCGTACGTAATAAATACCCTTCGGTCCTCACAGGCGGAGAGCC
CTAGCCTAGCTGTAAGCACGAATGTCGGTAGCTGAGGAGAAGCGTGTGTC
CTGCCTCGTTGCTTGCTTTGCCTTTCTTCTCTTTGATTGCCTGCCTAATT
ATGCCTTCTTGATCAGGTTCACGAAAATAGACTCCAACAAACGGCCTTCA
ATCATGCATATCTTGTTTTTTCCGGGATAATGAAAAGCATCGCATGCGTT
ATACCTCGCGTTTCTGTGTCAATCCCCCACTTCGCGTCGGCCGAAATCCT
GGCTTGCTTTGAGTTGACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2177:12102..20172+

>mRNA_H-paniculata_contig2177.5753.1 ID=mRNA_H-paniculata_contig2177.5753.1|Name=mRNA_H-paniculata_contig2177.5753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig2177:12102..20172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCTACCGTTGCTTCGTTCGCTGCGTTCTTTGCTACTGCGTCTGC
ATTCATGGCCCCTACCCCGATGCGCACAGCAGCCCCACGGGCTGCGAAAA
GTGGGATGAGCATGTCTGCGAAAAGCGCGTCCATCCCCTTCATGCCTCAA
CCCGAGAAGTTGGATGGGAGCATGGCCGGGGATGTTGGATTCGACCCTCT
TGGTTTGTCCAATATTAACATCGACTTTAGCGAGATGAAGGCTACCGTTG
CTTCGTTCGCTGCGTTCTTTGCTACTGCGTCTGCATTCATGGCCCCTACC
CCGATGCGCACAGCAGCCCCACGGGCTGCGAAAAGTGGGATGAGCATGTC
TGCGAAAAGCGCGTCCATCCCCTTCATGCCTCAACCCGAGAAGTTGGATG
GGAGCATGGCCGGGGATGTTGGATTCGACCCTCTTGGTTTGTCCAATATT
AACATCGACTTTAGCGAGTTCATCGTGCCTGGGGCGGCTGTAATGCGCGA
CGAGGGCACCTCCGGCGTGGACACCCTGTATTGGATGCGTGAAGCGGAGC
TCAAGCACGGGCGTGTTGCCCAGTTGGCGGTTCATCGTGCCTGGGGCGGC
TGTAATGCGCGACGAGGGCACCTCCGGCGTGGACACCCTGTATTGGATGC
GTGAAGCGGAGCTCAAGCACGGGCGTGTTGCCCAGTTGGCGGTGGTGGGC
TGGATCTTGGTGGACCAAGGATGGCGGTTTCCCGGATCGCAGTACTCATC
TATTGCTAGCTCTGTCGTGGCGCACGACCCGATGGTTGCCGCTGGAAACA
TGACGCTTCTTCTGGGTGTGGTCTTCATTCTGGAGATGATCGGTGGAGCT
GCAATCTTTGGCGCAGCCAAGGGCTCAGGCCGCGCTCCGGTGGTGGGCTG
GATCTTGGTGGACCAAGGATGGCGGTTTCCCGGATCGCAGTACTCATCTA
TTGCTAGCTCTGTCGTGGCGCACGACCCGATGGTTGCCGCTGGAAACATG
ACGCTTCTTCTGGGTGTGGTCTTCATTCTGGAGATGATCGGTGGAGCTGC
AATCTTTGGCGCAGCCAAGGGCTCAGGCCGCGCTCCGGGTGACTTTGGGC
TGGACCCTTTCTACTTGACTGAGAAGTCTGACAAAAAGGCGCGGTACGAA
TTGTCGGAGATTGCGCACTGCCGTCTCGCCATGTTTGCCATCTCCGGCAT
CTGCACGCAGGCGGTACTTAACGGCGGGAGCTTCCCGTACACTGTCCCAT
ACTAGGTGACTTTGGGCTGGACCCTTTCTACTTGACTGAGAAGTCTGACA
AAAAGGCGCGGTACGAATTGTCGGAGATTGCGCACTGCCGTCTCGCCATG
TTTGCCATCTCCGGCATCTGCACGCAGGCGGTACTTAACGGCGGGAGCTT
CCCGTACACTGTCCCATACTAG
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