prot_H-paniculata_contig2173.5745.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2173.5745.1
Unique Nameprot_H-paniculata_contig2173.5745.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length219
Homology
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BLAST of mRNA_H-paniculata_contig2173.5745.1 vs. uniprot
Match: D8LE68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE68_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 1.470e-86
Identity = 137/221 (61.99%), Postives = 163/221 (73.76%), Query Frame = 0 
Query:    1 MLSLRPVGTLAAQCEGFQSPLPLPHPSEAAVVLVGGLRASEHDSFSGACSGRIVTPQRGDGVQ------------AGGGRIDAGETPPMATMLVGERGKALLAQFYQRQSCLAIADVSRGLHRCFIPLRLAPPKGTTKGAVGGVTCMAGSQTKDSGLVFLGRTGLSMLQVVKVDPWDELGSLTHTLGDAGPVMALACHPSRPLVTACLSDGTVGLWDYQAV 209
            MLS RPVGTL A   GFQSPLPL HP+EA+VVLVGG RASEHDSF+GACS +IVTP  G  +             A G   D G    +ATM+VGE GKALLAQFYQ+  C+AI+DV+RGLHR F+ LR++ P+G+ + A GGV CMAGS T +SGLVFLGR GLS LQ V+VDPWD LGSL+  L D+GPV+A+ACHPSR +V ACLSDGT+ LWDY + 
Sbjct:    1 MLSFRPVGTLPAGSSGFQSPLPLAHPTEASVVLVGGSRASEHDSFNGACSAKIVTPTPGGEMSGSNNQANQSWGGAAGAAADGGRL--LATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRISQPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYDSA 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2173.5745.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE68_ECTSI1.470e-8661.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 73..215
e-value: 6.6E-6
score: 27.1
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 122..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2173contigH-paniculata_contig2173:3476..8138 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2173.5745.1mRNA_H-paniculata_contig2173.5745.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2173 3476..8153 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2173.5745.1 ID=prot_H-paniculata_contig2173.5745.1|Name=mRNA_H-paniculata_contig2173.5745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MLSLRPVGTLAAQCEGFQSPLPLPHPSEAAVVLVGGLRASEHDSFSGACS
GRIVTPQRGDGVQAGGGRIDAGETPPMATMLVGERGKALLAQFYQRQSCL
AIADVSRGLHRCFIPLRLAPPKGTTKGAVGGVTCMAGSQTKDSGLVFLGR
TGLSMLQVVKVDPWDELGSLTHTLGDAGPVMALACHPSRPLVTACLSDGT
VGLWDYQAVGEGGGGGSDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf