mRNA_H-paniculata_contig2173.5744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2173.5744.1
Unique NamemRNA_H-paniculata_contig2173.5744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2173.5744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2173contigH-paniculata_contig2173:1249..3430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size236
Cds size234
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2173.5744.1prot_H-paniculata_contig2173.5744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2173 1251..3430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.1780367-CDS-H-paniculata_contig2173:1250..12811622929592.1780367-CDS-H-paniculata_contig2173:1250..1281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2173 1251..1281 -
1691480926.9444957-CDS-H-paniculata_contig2173:1250..12811691480926.9444957-CDS-H-paniculata_contig2173:1250..1281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2173 1251..1281 -
1622929592.1906242-CDS-H-paniculata_contig2173:1981..21191622929592.1906242-CDS-H-paniculata_contig2173:1981..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2173 1982..2119 -
1691480926.9553134-CDS-H-paniculata_contig2173:1981..21191691480926.9553134-CDS-H-paniculata_contig2173:1981..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2173 1982..2119 -
1622929592.201404-CDS-H-paniculata_contig2173:3365..34301622929592.201404-CDS-H-paniculata_contig2173:3365..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2173 3366..3430 -
1691480926.965498-CDS-H-paniculata_contig2173:3365..34301691480926.965498-CDS-H-paniculata_contig2173:3365..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2173 3366..3430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2173.5744.1

>prot_H-paniculata_contig2173.5744.1 ID=prot_H-paniculata_contig2173.5744.1|Name=mRNA_H-paniculata_contig2173.5744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
VGSPPASPPRGRGSGKSSRDEKLPLKPRLEGKLFRVATLSAQGMPWGAPP
YRDASAEGFRSVAFHPSREWLCACTAPG
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mRNA from alignment at H-paniculata_contig2173:1249..3430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2173.5744.1 ID=mRNA_H-paniculata_contig2173.5744.1|Name=mRNA_H-paniculata_contig2173.5744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2182bp|location=Sequence derived from alignment at H-paniculata_contig2173:1249..3430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGATCCCCTCCCGCGTCTCCACCTAGGGGTCGCGGGTCGGGCAAGAG
TAGTAGGGACGAGAAGTAAGTGTTGTTGGTGCTGGTGATGGTAGTGGTGC
TGGTTCTGCTGTTGCTCTTGTCGTTTCGGTAGTGTGTTGGCGATATGCTG
GAGTACCTCGTTGGCTTTATTTCGAGGAAATAGTTATTGTAGTTGGTTTT
GGGAGGAATGTGTTTCGTCCAACATGGTTGCTAGGGGTAGGTCATGTAAC
TGGTTGAATGTTGTCTCCCTCAATTGATATTGAAAACGTCCCGTCCGACT
ACCCAGACCCAGGGTATTTGTGCCAGCGATGATCTCAATACTGAGTTGGT
TTGGTGGATGACCGTTTTTGTTGATTTTATATATTCGGAGAATGGCAAGC
ACCTTCGACAGTTCGGTAGTACGTGAAGATAGAGAGTAGATAGTTCAAAG
CGTTCCTGCTTTAGTACAGTACGGACCCGCTGGTGAGAAATTACCCTGTA
AGAAGAAATCGAGGTTCAGTTTTTGCTATTCCATAAGCCATTAGATATCA
GACGTGAGAAAGGGAGCTTAAATTGTCCCAATACTAGTTCTCATGTACAG
GTAGGAAACAGTAATTACTCTTCGTGATTCCTGCCAAAATAAGGTTTCAA
GCCTCGCCCGAAATAGGAGTAAGAGTTTATTACCATCGGGCCCGTACTGT
ATGTATGGTAACGGGTACCTTTTTTGGGGGGGGGGGGGGGGGTGTTACTT
GTCCCCACCTCTTCAAAGCAAGCCAGCGCGAGTGATGTACGTTTTCTGTT
CTACTTAGTTGATCGCTGCCCGCCCGCTCCGCCAGATAGCAACAGCAAGC
CATATTCGCCTCGCCACTGGAAGAGCAGGAGGGCAATACTATTGGTAATC
GTATGTTCATAAGTCAGATCTAGTAGGCGATCGATACTGGGTGAAACAGT
CGTGCAGAGCAGGCCACTCTTCTCGTGTCGGCAACGAAATAAGGGCCCCA
TCTATGTAGGTGTGCATGCACTCGGGTACGAATGGCGGTACGAGTGGCCT
ATGTATCCATCTTTTTCCAACTTAGTAGGGTAGAGTTCATATTCAGTGAA
AAAAACGTTATTTTTCTCTTTAACGGTCTAATAGCCCAATCACTCAGACC
CACGGTCAACATTATCTATACACTTTATTTATCAAGACAATATGTTATAA
CCCATCTATGCAGGGTTCACCAACAATGCAATGCCAACATGGTAAGCAAG
GAAGGCAATGATAGCCTGAGATTCCCCGCTTTGCTCTATCTCCCTGTCGT
GTGTTGCTAAGGCTCCCCCTAAAGCCGCGGTTGGAGGGCAAACTGTTCCG
CGTGGCCACGCTCTCTGCCCAGGGGATGCCATGGGGCGCTCCCCCCTATC
GAGACGCCTCCGCCGAGGGCTTCCGCTCGGTGGCATTCCACCCGTCCAGG
TGATTGAGGTCTTCAATTTTTTCGGCAGTATGGTACTGTTTGTTGGTGAT
TCTAGAGCCATGGCTAGGCTACGGCCGTGCATGCCGTTCATTATCTTTGA
CCCGTCCTTTGTCCTTGACGGACACACATCGATTCGCTGCGCTTTGCAGT
GGCTCGCTACGCTCGCACGAAGATTCGTTCTGTCAGAAGTTACTTGAGAG
TACAGATTAAACAATATGTTCCGAAAAGGTCGATGACAACGATGAGGACG
ACGACGAACTTGTTAAACACATTATTGAGTAGTTAAGATTCGTATTTCGT
TGTATCAGGCGTTCCGTTTAGGGGCGATCAAATCAATGCTCGAGGTTGTA
CTGTTCAGACCCATTGGTCAGGGTGGGTAACGGGTGATCAGTGAAGAGTG
AACAGTATCCGTTCGGTCGCAACGAATGTTTCGTCTCCTTTCGGACTCTG
TACCCGGGATTGTCTTGAGCGTGTGCCCGGAACGGTTCCGAGCAGACCTC
TGTATGTATATCTGTATTTAGTTGATGCGAGTAGGGGGTTGCACCTTCGT
GTGGCTTTTTCTCGCACGAAATGAATTGGATTTGGAGATTCAACGGTCGT
TTTTTTGACGGGGAGTGTTTACGTGTCTGCGGTCTGAATTAGATCCATTC
AAGCTCTGTAAATTAAAAGGCTTGTGTGCTGACCATGCTTGCTCGGCAGG
GAGTGGCTGTGCGCTTGCACCGCGCCAGGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig2173:1249..3430-

>mRNA_H-paniculata_contig2173.5744.1 ID=mRNA_H-paniculata_contig2173.5744.1|Name=mRNA_H-paniculata_contig2173.5744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig2173:1249..3430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGATCCCCTCCCGCGTCTCCACCTAGGGGTCGCGGGTCGGGCAAGAG
TAGTAGGGACGAGAAGTTGGATCCCCTCCCGCGTCTCCACCTAGGGGTCG
CGGGTCGGGCAAGAGTAGTAGGGACGAGAAGCTCCCCCTAAAGCCGCGGT
TGGAGGGCAAACTGTTCCGCGTGGCCACGCTCTCTGCCCAGGGGATGCCA
TGGGGCGCTCCCCCCTATCGAGACGCCTCCGCCGAGGGCTTCCGCTCGGT
GGCATTCCACCCGTCCAGGCTCCCCCTAAAGCCGCGGTTGGAGGGCAAAC
TGTTCCGCGTGGCCACGCTCTCTGCCCAGGGGATGCCATGGGGCGCTCCC
CCCTATCGAGACGCCTCCGCCGAGGGCTTCCGCTCGGTGGCATTCCACCC
GTCCAGGGAGTGGCTGTGCGCTTGCACCGCGCCAGGGGGAGTGGCTGTGC
GCTTGCACCGCGCCAGGG
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