mRNA_H-paniculata_contig217.5736.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig217.5736.1
Unique NamemRNA_H-paniculata_contig217.5736.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig217.5736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig217contigH-paniculata_contig217:22048..23851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.485333-CDS-H-paniculata_contig217:22047..220831622929590.485333-CDS-H-paniculata_contig217:22047..22083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig217 22048..22083 +
1691480926.1319325-CDS-H-paniculata_contig217:22047..220831691480926.1319325-CDS-H-paniculata_contig217:22047..22083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig217 22048..22083 +
1622929590.507387-CDS-H-paniculata_contig217:23521..238511622929590.507387-CDS-H-paniculata_contig217:23521..23851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig217 23522..23851 +
1691480926.1439211-CDS-H-paniculata_contig217:23521..238511691480926.1439211-CDS-H-paniculata_contig217:23521..23851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig217 23522..23851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig217.5736.1prot_H-paniculata_contig217.5736.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig217 22048..23851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig217.5736.1

>prot_H-paniculata_contig217.5736.1 ID=prot_H-paniculata_contig217.5736.1|Name=mRNA_H-paniculata_contig217.5736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LADVFLTGGRFQENHSEVISMGKDIRSFLNVSEAGAGGSKIAKSTNGASS
SGATAHASSNSLLGSLMHPVTAPKPAAGLDNDSLSALSVFKSSKRGGGSG
RSGNSLDIDDDDNGDLEISLGG
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mRNA from alignment at H-paniculata_contig217:22048..23851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig217.5736.1 ID=mRNA_H-paniculata_contig217.5736.1|Name=mRNA_H-paniculata_contig217.5736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1804bp|location=Sequence derived from alignment at H-paniculata_contig217:22048..23851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGCGGATGTGTTCCTGACGGGAGGTCGGTTCCAGGTATGCCGCGAGGT
TGGTTTTTCAACACTATTTTCAGTCCGTACTGCTTCGTAAGCCGGGAAAT
TCCATATCAAGCGTTCACAGTAATTACAGTGTAATAAATCAGAAAATTTA
GTGTTCATATTTTGATTTTGAAATGCTATTTTTACAGGAGCTGGCTACAC
ACAGGTCAAGACAGATTACAGCGGAGAACATACACGAATTGTCAATCTGT
GGTTATACTTACATATGATGTGCTCTCAGCAGCTCCTCCCTACCTCCTAT
GAGGAATCTACAGCACCGCATCCAGATGTAGCCGATGATATAGGGTACAC
ATCGCTATTTCGCCGCAAGATGGTAACTTGTGTCCCTGGCACGTGGCACA
ATCCTAGGAGTGGAAATCACTTCCTGTATTGTAACGGCTTGGTAATCGAA
ACAATCCTGGGTGAACGACAATTGTATACTGAGTGTACACTATTCGCTGT
ATTTCGGACATTCTCCTTATATTCAAAGCTATTAGGCTTTGCGTTTGGCG
GACGTGGCAGGGCCGCAATATCGCAACTCAACTATCAGTGTCGTGTAAAC
TTGGTGGCCGGTGCAAGACAATCGACGGTATTGATAGTCGCCTCCACTAC
ATGTACAGCATTAACTCCCTTTCGGGCTGGATATCATTTTGAAACGTGAT
CTTATCTTTACAAAAAACAATGGATAATAACGAAACGAAGGCTCATATGA
ACATTAGAATCTGCAACTATCTCCCAGAAAAGCTGCAGCTCTTGTTGATC
GCGGCAACAAACTTCGAACTCGACATCCAGCGAAAGTGACATGTCAGCAT
GGGATGCGTTTGAACGAGCTGTGAAGTGCCATGCTTTGTTCCAGAGCGCG
GGACCTGTTTTGCACTATGAAAGGACATAGCAAGCATCAATATTGTCGCT
GGAACAGATCTGTGTCGCCAGCACAGATTTTCCCTCATGTAGAGCCCCAT
AGTTAAATCGGGCACCTTGTGCAGGGATACCCCACAGGCCCCCAAAGCCT
GCACGCCACCTTACTGAGTGTACGTATGTATGGGCGATGTCCTCCACCCC
TAATTACTACGCAAAAAGGCGTTGTGAAACTATTTTTTCTTGTTCATTTC
TACACACTAGATCTTTATTTTTTCAAGTCCCGTTGGTCACCCCTCCAAAA
CCGCTTCTTCAGCATAGATTTTTTTAGGAGATATATGGCGCCGTAGTCCC
AATAGAGTTCATGCTTATTGTTCACGTACATTTTCTGTTTTGCTCCAAAT
GCTATCAGCCTTCACAAGACCATTATTCAGGTCATTAGATAGGGCCATAT
TTCTCTATTTAGATTAGATAACACAGCCTGTATTCAGTATCTGCCCACTG
TTTCGCAATTTTTCCTCGCACAACAATGAGCCCCCTCTTTCGTTGTCCGC
ATTCACTCCGCCACAATTCTACAGGAAAATCACAGTGAAGTAATAAGCAT
GGGGAAAGACATCCGCAGCTTCCTAAATGTCAGCGAGGCGGGCGCCGGCG
GAAGCAAAATAGCAAAATCTACTAACGGGGCTAGTTCTTCAGGTGCAACC
GCCCATGCCTCCAGCAATAGCCTTCTGGGCTCGCTGATGCACCCAGTCAC
CGCTCCCAAGCCTGCCGCAGGTCTGGATAACGACTCGCTCTCCGCACTTT
CGGTCTTCAAGTCTTCGAAGCGAGGGGGCGGAAGCGGGCGATCGGGGAAT
AGCTTGGATATTGACGATGACGACAATGGAGACTTGGAAATATCCTTGGG
CGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig217:22048..23851+

>mRNA_H-paniculata_contig217.5736.1 ID=mRNA_H-paniculata_contig217.5736.1|Name=mRNA_H-paniculata_contig217.5736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig217:22048..23851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGCGGATGTGTTCCTGACGGGAGGTCGGTTCCAGTTAGCGGATGTGTT
CCTGACGGGAGGTCGGTTCCAGGAAAATCACAGTGAAGTAATAAGCATGG
GGAAAGACATCCGCAGCTTCCTAAATGTCAGCGAGGCGGGCGCCGGCGGA
AGCAAAATAGCAAAATCTACTAACGGGGCTAGTTCTTCAGGTGCAACCGC
CCATGCCTCCAGCAATAGCCTTCTGGGCTCGCTGATGCACCCAGTCACCG
CTCCCAAGCCTGCCGCAGGTCTGGATAACGACTCGCTCTCCGCACTTTCG
GTCTTCAAGTCTTCGAAGCGAGGGGGCGGAAGCGGGCGATCGGGGAATAG
CTTGGATATTGACGATGACGACAATGGAGACTTGGAAATATCCTTGGGCG
GGGAAAATCACAGTGAAGTAATAAGCATGGGGAAAGACATCCGCAGCTTC
CTAAATGTCAGCGAGGCGGGCGCCGGCGGAAGCAAAATAGCAAAATCTAC
TAACGGGGCTAGTTCTTCAGGTGCAACCGCCCATGCCTCCAGCAATAGCC
TTCTGGGCTCGCTGATGCACCCAGTCACCGCTCCCAAGCCTGCCGCAGGT
CTGGATAACGACTCGCTCTCCGCACTTTCGGTCTTCAAGTCTTCGAAGCG
AGGGGGCGGAAGCGGGCGATCGGGGAATAGCTTGGATATTGACGATGACG
ACAATGGAGACTTGGAAATATCCTTGGGCGGG
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