prot_H-paniculata_contig2169.5732.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2169.5732.1
Unique Nameprot_H-paniculata_contig2169.5732.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length256
Homology
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BLAST of mRNA_H-paniculata_contig2169.5732.1 vs. uniprot
Match: A0A6H5K4Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.760e-22
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 0 
Query:  165 KLDDLEVRQKKFTTAMTTLSSTRLWKAVPALIAEAGRVGLPLNVICVNAAMSAFSKSGRWMEALQLLSQMRRGTCLKDVCGGEAATG 251
            +LD+ ++RQ+KFT  M  L     WKAV  LIAEAGRVGLPLNVIC+NAAMS  ++SGRW EAL LLS MRRG  L DV GG   +G
Sbjct:   64 RLDERDLRQRKFTKGMKQLGYRGGWKAVRGLIAEAGRVGLPLNVICLNAAMSVLARSGRWYEALDLLSMMRRGALLVDVDGGGDGSG 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2169.5732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4Z1_9PHAE1.760e-2262.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 159..245
e-value: 7.8E-8
score: 33.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 210..237
e-value: 1.6E-4
score: 19.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 207..241
score: 9.394
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 23..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..256
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2169contigH-paniculata_contig2169:8070..21951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2169.5732.1mRNA_H-paniculata_contig2169.5732.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2169 8058..21951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2169.5732.1 ID=prot_H-paniculata_contig2169.5732.1|Name=mRNA_H-paniculata_contig2169.5732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=256bp
MMRRRRRPHRVSRISGEITTPFTVTVSALALMGLRNTQALNMKSFGHHER
TTVAAATSWPSFVVCRTPAAPGAEGVIRSRQSRSSTLLSRVPAVAVGDGR
RGRSFARHCMSEGDGVRSSAAAGTGASAASRAGEATASAAEGGFSETQAQ
QTVVDEGSAVRQRKKLDDLEVRQKKFTTAMTTLSSTRLWKAVPALIAEAG
RVGLPLNVICVNAAMSAFSKSGRWMEALQLLSQMRRGTCLKDVCGGEAAT
GGAGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat