mRNA_H-paniculata_contig21636.5715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21636.5715.1
Unique NamemRNA_H-paniculata_contig21636.5715.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: D7FHS6_ECTSI (Heat shock protein 40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.690e-27
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 GANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLIINFRV 213
            GA+L+Y  KISL+DALLGFER LTLL+GTRVP+VHDQVTLSGY QE PGLGFPV+G  DG+ GSL+I+F V
Sbjct:  367 GADLIYRKKISLIDALLGFERMLTLLDGTRVPIVHDQVTLSGYQQELPGLGFPVVGG-DGDRGSLVIDFEV 436
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A7S2SRW2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRW2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.070e-13
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    7 NLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPV-----LGSKDGEHGSLIINFRV 213
            +L+Y A+ISL +AL+GFER LT + G R+PVVH  VT SG+S  FPG G PV     +  +    G+L++ F V
Sbjct:   15 DLLYRARISLKEALVGFERHLTTITGQRIPVVHRSVTFSGFSLTFPGHGLPVYTDPPVDPEAAGRGTLLVQFEV 88
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A7S2CS64_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CS64_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.850e-13
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 GANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEH--------GSLIINFRV 213
            GAN+ Y AK++L++AL G ++KLTLL+G R+ V H +VT SGY + FPG G PV  +++G+         G L+++F V
Sbjct:   64 GANIHYTAKMTLIEALTGMKKKLTLLSGKRLTVKHSKVTFSGYQKNFPGHGLPV--TEEGQDPKAMPRAFGDLVVDFEV 140
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: F0XX29_AURAN (Putative heat shock protein DnaJ n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX29_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.120e-10
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 GANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLIINFRV 213
            GAN+   A + L+DAL GF +KLT L+G R+ V HD+V  S ++ E PG G PV G+   + GSL +   V
Sbjct:  293 GANVWCNASVGLLDALYGFSKKLTGLDGARLDVRHDRVAFSSFTHELPGEGLPVFGNAT-QRGSLTVYVAV 362
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A7S1CN60_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CN60_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.760e-9
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    7 NLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPV 162
             L+Y+A+I L+DAL+GF R LT+L+G+++ + HD VT SGY Q + G G P+
Sbjct:  195 GLLYQARIPLIDALVGFARNLTMLDGSKLLIRHDIVTFSGYRQTYRGRGLPL 246
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A5A8DUV2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUV2_CAFRO)

HSP 1 Score: 59.3 bits (142), Expect = 1.340e-8
Identity = 29/65 (44.62%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:    4 ANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLI 198
            ANL  E  +SL+DALLGF R + LLNGT   +V   +T+SG     PG G P  G      GS++
Sbjct:  287 ANLKMEVAVSLLDALLGFNRTIQLLNGTSHTLVRQTITMSGTQVTVPGAGLPKAGPGSNPFGSMV 351
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A7S0HM24_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HM24_9CRYP)

HSP 1 Score: 56.2 bits (134), Expect = 1.620e-7
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 GANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLIINFRV 213
            G +LV    ISL++ALLGF+R++  L+G  + +  ++VT  G S E  G+G P+   K GE G LII   +
Sbjct:  301 GHDLVTWQNISLMEALLGFQREIKHLDGRMIKIERNEVTKPGQSHEVLGMGMPIY-QKPGEFGKLIIKLNI 370
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A7S4KZI8_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KZI8_GUITH)

HSP 1 Score: 56.2 bits (134), Expect = 1.650e-7
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 GANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLIINFRV 213
            G +LV    ISL++ALLGF+R++  L+G  + +  ++VT  G S E  G+G P+   K GE G LII   +
Sbjct:  405 GHDLVTWQNISLMEALLGFQREIKHLDGRMIKIERNEVTKPGQSHEVLGMGMPIY-QKPGEFGKLIIKLNI 474
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A5C3M920_9AGAR (Uncharacterized protein n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3M920_9AGAR)

HSP 1 Score: 55.5 bits (132), Expect = 2.980e-7
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    4 ANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLIINFRV 213
            ++L ++  I + +ALLGFER LT L+G  VP+V   VT  GY Q   G G P+ G     HG L + + V
Sbjct:  272 SSLYWKETIGIDEALLGFERNLTHLDGHIVPLVRKGVTQPGYVQTITGEGMPISGRS--AHGDLFVEYNV 339
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BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Match: A0A8H6HZ69_9AGAR (Uncharacterized protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6HZ69_9AGAR)

HSP 1 Score: 55.5 bits (132), Expect = 2.980e-7
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    4 ANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGLGFPVLGSKDGEHGSLIINFRV 213
            ++L ++  I + +ALLGFER LT L+G  VP+V   VT  GY Q   G G P+    + +HG L + + V
Sbjct:  272 SSLYWKETIGVDEALLGFERNLTHLDGRTVPLVRKGVTQPGYVQVIKGEGMPLFNRHE-QHGDLFVEYNV 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21636.5715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHS6_ECTSI2.690e-2774.65Heat shock protein 40 n=1 Tax=Ectocarpus siliculos... [more]
A0A7S2SRW2_9STRA2.070e-1347.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CS64_9STRA2.850e-1344.30Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
F0XX29_AURAN3.120e-1045.07Putative heat shock protein DnaJ n=1 Tax=Aureococc... [more]
A0A7S1CN60_9STRA3.760e-950.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8DUV2_CAFRO1.340e-844.62Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S0HM24_9CRYP1.620e-740.85Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4KZI8_GUITH1.650e-740.85Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A5C3M920_9AGAR2.980e-741.43Uncharacterized protein n=1 Tax=Crucibulum laeve T... [more]
A0A8H6HZ69_9AGAR2.980e-740.00Uncharacterized protein n=2 Tax=Tulosesus angulatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21636contigH-paniculata_contig21636:2235..3810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog44056.XP_009032174.1
KEGG koko:K03686
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0712@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.1190598-CDS-H-paniculata_contig21636:2234..23361622929587.1190598-CDS-H-paniculata_contig21636:2234..2336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21636 2235..2336 -
1691480925.010637-CDS-H-paniculata_contig21636:2234..23361691480925.010637-CDS-H-paniculata_contig21636:2234..2336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21636 2235..2336 -
1622929587.1361017-CDS-H-paniculata_contig21636:3699..38101622929587.1361017-CDS-H-paniculata_contig21636:3699..3810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21636 3700..3810 -
1691480925.0231643-CDS-H-paniculata_contig21636:3699..38101691480925.0231643-CDS-H-paniculata_contig21636:3699..3810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21636 3700..3810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21636.5715.1prot_H-paniculata_contig21636.5715.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21636 2235..3810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21636.5715.1

>prot_H-paniculata_contig21636.5715.1 ID=prot_H-paniculata_contig21636.5715.1|Name=mRNA_H-paniculata_contig21636.5715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
GANLVYEAKISLVDALLGFERKLTLLNGTRVPVVHDQVTLSGYSQEFPGL
GFPVLGSKDGEHGSLIINFRV
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mRNA from alignment at H-paniculata_contig21636:2235..3810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21636.5715.1 ID=mRNA_H-paniculata_contig21636.5715.1|Name=mRNA_H-paniculata_contig21636.5715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1576bp|location=Sequence derived from alignment at H-paniculata_contig21636:2235..3810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGAATTTGGTGTACGAGGCAAAGATATCTCTTGTGGACGCACTCCT
AGGGTTCGAGCGAAAGCTCACTCTCCTAAACGGCACCCGCGTCCCGGTAG
TTCACGACCAGGTCAACATTACTTACAGACAGGATACACGACAGCACTTG
AAGAAGCGCCTATTTTTTATGCGAATTAAGATTTATTCTATATACAGACT
TTTTTACACCACGAAAACAAGGTTTTTCTTATAACGTGATATTCTACATC
GTTTTATCCCACGCCCTTATGTCTTCTATAACTTTATAGGATCTTGTGTG
GGGACACAAACTGAGTAAAGTTTTCTCAGGCAAGTATTCTTGACGGCGCA
AAAAATTGATGCCGAATTTGTATTCATACCCAATTTCTTGAGTTCGTGTC
GTGTACTGTTGTGTGCCCCGCGTTATACCGTTGAAACTAAAGATTCAGTG
GTATCATGCACTATTATTGTAACAAGACTTCCACTCGTTGAAAAATACGA
AAAGCCCCGATAGTTGATGCACAGAGGTGGTGGTGGCGATGGTGTTGGTT
CCGGCTGTTGTTTCGGAATAGTCGTCCAAGTCTGTGTAATTCGAGCAACT
TCGATAAACAGAATAGTTGTCGACAATGTGCTTACATGCTAGCGTGGTGA
GCCGTTGCGTGCGTGGGTCATGGGTTTCGGAGAATTACTTCATGGGAAGA
AGGGACAAAATGCAGAGTGCACGGGCGCAGCCATGGCTCTTCTACGAGTA
GATATATACCTGTATTCATGCCTCACGGCAAAAAGCTCAAAATTAACAAG
AATCGAAATCAAAAGTCGAAAAAGTATACTCCGGAGGTTGTGCAGTACAG
TATTCTCCATTCGTTGTGGAACAATATAGTCGGGATGTTCCCATTATATA
TCTTACTTCGGTACTACCCTCGTCCGCGTATACGACTACGTCTTGTTCCA
TTGTTAGCATGCTCGAATCAGAGGGTATTTACGACAGAGCGTGAAGAATA
GCATCCACCATCCAACCAACATGGGGACAAAAACCAGAAACAACGACAAC
CATGAAAAAAACAGGAACGGATTCTTGACCATAAACCGGGTTTCAAACTG
AACCCTCCCGCCACCCCTTCCACACTCTTTAGTTTCAAACCCGGTCGAAT
CCGGCTGACATCTGGCTATTCATTCCCTTGGGCTACTACATATATGTATA
TAGATATACTCATAAACTTCCTTGTTTCGTCCCTGGTCGCCGGCGTTGGG
GCAGTCGGTGTTTGTCCAACACCACCAAAAAACCTTTTGTGTTTCTTTCC
GTTGGACATGGCCATTCCTTCCCTGCTGCATTTTGCCACATCCCGAAGGG
GAACCTTGTATATATGTGTGTGTGTATAATTCTTTTTCGCGATCCGCAAA
CCCCAGTTCCTGTTACCTTGCTCTATTTTCCTAGCCTTTGATACCATTCT
TATGTTGCTGCGTTACGTTTTTAGGTAACGCTGTCCGGGTACAGCCAAGA
ATTTCCCGGGCTGGGATTCCCGGTTCTCGGCAGCAAGGACGGGGAACACG
GCTCTCTGATTATCAATTTTAGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig21636:2235..3810-

>mRNA_H-paniculata_contig21636.5715.1 ID=mRNA_H-paniculata_contig21636.5715.1|Name=mRNA_H-paniculata_contig21636.5715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig21636:2235..3810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGAATTTGGTGTACGAGGCAAAGATATCTCTTGTGGACGCACTCCT
AGGGTTCGAGCGAAAGCTCACTCTCCTAAACGGCACCCGCGTCCCGGTAG
TTCACGACCAGGGGGCGAATTTGGTGTACGAGGCAAAGATATCTCTTGTG
GACGCACTCCTAGGGTTCGAGCGAAAGCTCACTCTCCTAAACGGCACCCG
CGTCCCGGTAGTTCACGACCAGGTAACGCTGTCCGGGTACAGCCAAGAAT
TTCCCGGGCTGGGATTCCCGGTTCTCGGCAGCAAGGACGGGGAACACGGC
TCTCTGATTATCAATTTTAGGGTGGTAACGCTGTCCGGGTACAGCCAAGA
ATTTCCCGGGCTGGGATTCCCGGTTCTCGGCAGCAAGGACGGGGAACACG
GCTCTCTGATTATCAATTTTAGGGTG
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