mRNA_H-paniculata_contig21631.5714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21631.5714.1
Unique NamemRNA_H-paniculata_contig21631.5714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 1.430e-89
Identity = 154/211 (72.99%), Postives = 171/211 (81.04%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTP L+A+RL RIR FLVEMD+A RAEDAGLAV+VYMDESFVHQAHGS YS FP+DE+GV +DG+GRT GKGLRMIM HAITKW PL      +  PIEEGWFK  E G GK+      M DE+TAEFLWQAKLAKGDYHAAMTD MFMEWLEHRL+P
Sbjct:   66 EFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSP 266
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 3.360e-89
Identity = 148/211 (70.14%), Postives = 166/211 (78.67%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTP L+A+RL RIR FLVEMD+A RAEDAGLAV+VYMDESFVHQAHGS YS FP+DE+GV +DG+GRT GKGLRMIM HAITKW PL      +  PIEEGWFK  ++G+         M DE+TAEFLWQ KLA GDYHAAMTD MFMEWLE RL P
Sbjct:   46 EFINDEHKAGRQVFRRTVAEWMHSTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFKETDSGK-------KEMEDEETAEFLWQTKLATGDYHAAMTDSMFMEWLELRLNP 246
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 7.640e-89
Identity = 156/211 (73.93%), Postives = 173/211 (81.99%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEW+   CN + + SNR+VGGLL RLGY+RRRGRIKTP L+A+RL RIR FLVEMD+A RAEDAGLAV+VYMDESFVHQAHGS YS FP+DENGV +DG+GRT GKGLRMIM HAITKW PL      + FPIEEGWFK  E G GK+      M DE+TAEFLWQAKLAKGDYHAAMTD MFMEWLEHRL+P
Sbjct:  217 EFINDEHKAGRQVFRRTVAEWVHRTCNME-QPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--FCDGFPIEEGWFK--ETGSGKK-----KMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSP 417
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5KF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF49_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 2.310e-88
Identity = 161/265 (60.75%), Postives = 182/265 (68.68%), Query Frame = 3 
Query:  453 GKHLQDRPFESQRRQQALVRPQHPAGNHRRRKRQGHQERRRPTTSHPRSGGPALQVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            G+H+QDRP E Q RQQ LV                           PR     L+    +H+ GR    C         C  +++ SNR+VGGLL RLGY+RRRGRIKTP LDA RL RIR FLVEMDIA RAEDAGLAV+VYMDESFVHQAHGS YS FP+DE+GV +DG+GRT GKGLRMIM HAITKW PL      + FPIEEGWFK K  G+GK+GGKD N+ DE+TAEFLWQAKLAKGDYHAAMTD MFMEWLE RL+P
Sbjct:  164 GEHIQDRPREGQTRQQPLV-------------------------GTPRVVRDHLRGERQDHEEGRPAALCH------RTCGFEEQPSNRSVGGLLSRLGYKRRRGRIKTPRLDAARLARIRRFLVEMDIAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGFPIEEGWFKSKGGGKGKRGGKDFNLEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLERRLSP 395
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 7.310e-87
Identity = 152/211 (72.04%), Postives = 167/211 (79.15%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTP L+A+RL RIR FLVEMD+A RAEDAGLAV+VYMDESFVHQAHGS  S FP+DE+GV +DG+GRT GKGLRMIM HAITKW PL        FPIEEGWFK  E G GK+      M DE+TAEFLWQ KLAKGD HAAMTD MFMEWLEHRL P
Sbjct:  156 EFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPCSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCYGFPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQVKLAKGDNHAAMTDSMFMEWLEHRLNP 356
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 1.990e-86
Identity = 153/211 (72.51%), Postives = 170/211 (80.57%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTP L+A+RL RIR FLVEM +A RAEDAGLAV+VYMDESFVHQAHGS YS FP+DE+GV +DG+GRT GKGLRMIM HAITKW PL      +  PIEEGWFK  E G GK+      M DE+TAEFLWQAKLAKGDYHAAMTD MFMEWLEHRL+P
Sbjct:  183 EFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSP 383
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 1.970e-84
Identity = 152/211 (72.04%), Postives = 170/211 (80.57%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SNR+ GGLL RLGY+RRRGRIKTP L+A+RL RIR FLV M++A RAEDAGLAV+VYMDESFVHQAHGS YS FP+DE+GV +DG+GRT GKGLRMIM HAITKW PL      +  PIEEGWFK  E G GK+      M DE+TAEFLWQAKLAKGDYHAAMTD MFMEWLEHRL+P
Sbjct:  194 EFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLV-MNMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSP 393
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.060e-83
Identity = 148/211 (70.14%), Postives = 165/211 (78.20%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SNR+  GLL RLGY+ RRGRIKTP L+A+RL RIR FLVEMD+A RAEDAGLAV+VY+D SFVHQAHGS YS FP DE+ V +DG+GRT GKGLR+IM HAITKW PL         PIEEGWFK  E G GK+      M DE+TAEFLWQAKLAKGDYHAAMTD MFMEWLEHRL+P
Sbjct:   78 EFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNRSAEGLLSRLGYKGRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYIDGSFVHQAHGSPYSYFPADEDEVVQDGIGRTTGKGLRVIMVHAITKWGPLAKLCV--GLPIEEGWFK--ETGSGKR-----EMEDEETAEFLWQAKLAKGDYHAAMTDSMFMEWLEHRLSP 278
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 7.940e-83
Identity = 147/211 (69.67%), Postives = 165/211 (78.20%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENGRGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + INDEHKAGRQVFR TVAEWM   CN + + SN + GGLL RLG +RRRGRIKTP L A+RL RIR FLVEM +A RAEDAGLAV+VY+DESFVHQAHGS YS FP+D++GV +DG+GRT GKGLRMIM HAITKW PL      +  PIEEGWFK  E G GK+      M DE+T EFLWQA LAKGDYHAAMTD MFMEWLEHRL+P
Sbjct:  249 EFINDEHKAGRQVFRRTVAEWMHRTCNME-QPSNGSAGGLLSRLGCKRRRGRIKTPPLKAERLARIRRFLVEMVMAKRAEDAGLAVIVYVDESFVHQAHGSPYSYFPSDDDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAK--LCDGLPIEEGWFK--ETGSGKK-----EMEDEETVEFLWQATLAKGDYHAAMTDSMFMEWLEHRLSP 449
[Close]
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 9.810e-82
Identity = 141/213 (66.20%), Postives = 167/213 (78.40%), Query Frame = 3 
Query:  615 QVINDEHKAGRQVFRCTVAEWMMEHCNPDKEVSNRAVGGLLQRLGYRRRRGRIKTPSLDAKRLTRIRLFLVEMDIA*RAEDAGLAVLVYMDESFVHQAHGSAYSCFPTDENGVAEDGMGRTMGKGLRMIMAHAITKWDPLIARGTKNNFPIEEGWFKRKENG--RGKQGGKDSNMTDEKTAEFLWQAKLAKGDYHAAMTDMMFMEWLEHRLTP 1247
            + I  EH+AGRQVFR TV +++   C+   E+SNRAVGGLLQRLG++RRRGRIK P L+ +R  RIRLFLV+MD+A RAEDAG+AV+VYMDESFVHQAHGSAYS FP+D+ GV +DG+GRT GKGLRM+M HAITK  PL     +  FPI EGWFK KEN   + K G  D  M+DE+TAEFLWQAKLA GDYH AMTD MFM+WL+HRL P
Sbjct:   62 EFIKGEHEAGRQVFRRTVKDYL--ECSFGLEMSNRAVGGLLQRLGFKRRRGRIKIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGIGRTTGKGLRMMMVHAITKHGPLAE--LQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQAKLATGDYHNAMTDGMFMQWLKHRLNP 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21631.5714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDX7_9PHAE1.430e-8972.99DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JWX3_9PHAE3.360e-8970.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LNM6_ECTSI7.640e-8973.93DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KF49_9PHAE2.310e-8860.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAU4_9PHAE7.310e-8772.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIM5_9PHAE1.990e-8672.51DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE1.970e-8472.04DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE1.060e-8370.14DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JMA8_9PHAE7.940e-8369.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV8_9PHAE9.810e-8266.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21631contigH-paniculata_contig21631:474..3012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2028
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21631.5714.1prot_H-paniculata_contig21631.5714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21631 1821..2619 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.6328945-UTR-H-paniculata_contig21631:473..18201622929586.6328945-UTR-H-paniculata_contig21631:473..1820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21631 474..1820 -
1691480924.971839-UTR-H-paniculata_contig21631:473..18201691480924.971839-UTR-H-paniculata_contig21631:473..1820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21631 474..1820 -
1622929586.8723462-UTR-H-paniculata_contig21631:2619..30121622929586.8723462-UTR-H-paniculata_contig21631:2619..3012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21631 2620..3012 -
1691480924.9957647-UTR-H-paniculata_contig21631:2619..30121691480924.9957647-UTR-H-paniculata_contig21631:2619..3012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21631 2620..3012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.838983-CDS-H-paniculata_contig21631:1820..20511622929586.838983-CDS-H-paniculata_contig21631:1820..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21631 1821..2051 -
1691480924.9802015-CDS-H-paniculata_contig21631:1820..20511691480924.9802015-CDS-H-paniculata_contig21631:1820..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21631 1821..2051 -
1622929586.8567753-CDS-H-paniculata_contig21631:2562..26191622929586.8567753-CDS-H-paniculata_contig21631:2562..2619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21631 2563..2619 -
1691480924.988207-CDS-H-paniculata_contig21631:2562..26191691480924.988207-CDS-H-paniculata_contig21631:2562..2619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21631 2563..2619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21631.5714.1

>prot_H-paniculata_contig21631.5714.1 ID=prot_H-paniculata_contig21631.5714.1|Name=mRNA_H-paniculata_contig21631.5714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MLLFALRKDGVSKNQAVLQVASTFKIGHSKVRDVNKHWCDRNTQLETTGE
GRDKVTKNDDGRRRLTQDQEDQLYKLSTTSTKPGAKSFAVRWRSG*
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mRNA from alignment at H-paniculata_contig21631:474..3012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21631.5714.1 ID=mRNA_H-paniculata_contig21631.5714.1|Name=mRNA_H-paniculata_contig21631.5714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2539bp|location=Sequence derived from alignment at H-paniculata_contig21631:474..3012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACCCACCGGTGGTGCCACTGGCCGCCCGAGCAACGTGGCGAAAAGGGC
CAAAACTGGTGCGGCGAGAGATGCTGAGGCTCTCGACAGACTCAGGGTTC
AGCTTGAGGAGCAGAGGGCAGCGCTAGCGGCGCTCAAGACGGAGGTCGAG
TCGAGGGAGAAAGCTGTCAAGGCGAAAGAGGCAGCGATTGCCAAGGAGGC
AAACAAAGAGCGCGTCGCTGCGAAGCAGCAAGCGCACGAACAGCGAGAGC
AGGAACTCGTAGAAGCGGCTGCTCATGCCGCACAGCAGCTGAAGCTTTCA
CAGGCAGCCCACACCTTCATCGACGACTCTGTGGACAAGCTGAAGCCTCG
AACTGGCGAGGTCTTGTGCAATGTCCAGTCGAAGCTGATTCTCATGCTGC
TGTTTGCTCTTCGCAAGGACGGCGTCTCTAAGAATCAAGCAGTGCTTCAG
GTCAGTACGAGTACAGTCAGCAAGTTTATTTAATGTTGATATTACAAGTG
TCTGTTTTGTATTGCTTAAAGTATGCTGTACAGCAGCAGTTTTTGTGGCA
TGTTAATTTGAATCATCTGTCTTTTCGCGCCCTTTTCGGTGTTGCTGTTT
ATACACCTCTGAGTGTACAAGGTACTACTGTCTGTCCGAACACGGTTGCA
CTGCTGTCTGCTGTACTGTGCGCACCGCTGTTCGTACCGTTCGTAACCAC
TGCTGCCTGTACGGTTATGCACTGCTGTGTGTACCGTACAACAGTGAGTT
CGCTGTCTCCCAAATCCTCACCAATGTACCCACGGCGGTAACGCTGTTAC
GCATGGCGCCGCATGCGCATTTTCTTCCAAGGCTGTACGCTGTTAAACTT
CTGCTCTCTGTTTGCACGGCTTGAGGTGTGCTGTCTTGGCAATTGCACTG
ACCGGACTCCCGTATGCCGATGCAATATGCGCTACGCTCTGGACAACTGA
ACGTCTGCCAGGTGGCAAGCACCTTCAAGATCGGCCATTCGAAAGTCAGA
GACGTCAACAAGCACTGGTGCGACCGCAACACCCAGCTGGAAACCACCGG
CGAAGGAAGAGACAAGGTCACCAAGAACGACGACGGCCGACGACGTCTCA
CCCAAGATCAGGAGGACCAGCTTTACAAGTTATCAACGACGAGCACAAAG
CCGGGCGCCAAGTCTTTCGCTGTACGGTGGCGGAGTGGATGATGGAGCAC
TGCAACCCAGACAAGGAGGTGTCAAACCGCGCGGTAGGAGGGTTGCTGCA
AAGGCTCGGTTATAGGCGCCGTAGGGGCAGGATCAAAACACCCTCGTTGG
ATGCCAAGAGGCTCACGCGTATTCGTCTGTTTCTGGTTGAAATGGACATC
GCGTAAAGGGCAGAGGATGCGGGGCTGGCAGTTCTTGTGTACATGGATGA
GAGTTTTGTCCACCAGGCGCACGGTTCCGCCTATTCATGCTTTCCTACTG
ACGAGAATGGGGTTGCAGAGGATGGGATGGGTCGCACGATGGGGAAGGGC
TTACGCATGATTATGGCGCATGCAATCACGAAGTGGGATCCGTTGATTGC
GCGTGGTACCAAAAATAACTTTCCAATCGAAGAGGGTTGGTTTAAACGTA
AGGAAAACGGTAGGGGAAAGCAAGGGGGTAAGGACTCTAACATGACAGAT
GAGAAAACAGCAGAGTTTCTGTGGCAGGCCAAGTTGGCTAAGGGCGATTA
TCACGCGGCTATGACCGATATGATGTTCATGGAGTGGCTTGAACACCGCC
TTACCCCAGTTTTAACGCTAACCCTGAGTTCAGGAGCAAGAAGATGATTC
TTGTTCTTGACAACGCCTCGTACCATCATGGTTTCGACTCGGAAGTCAAG
GTGCCGGAAACCAATAACAAGGTGTACAATGTCCGACTGTTGCGTAAGTA
TGGAGCGGGGGCAATCGCGGTGAAGCGTGCCGATGCCAACGGCACAGTTG
TGGAGCACCGCTTCGAGGTACCAGCAGAACCCGGTTCTTCGTTCCCCGAT
GCGAGGCGGGCGGGCGGTGTTAGCAGAGAGGAGGTAGCGTTGGCCACTCG
AGAGTTTTTCCGCCTTCACTACCCTGAAAAGCTTGAGGAGCGGGTGGAGA
CGTTCATGCAGCAGAAGGGGTGGGAGTTGATTTGGACACCGCTTTACATG
CCATGCCGTCTTTTCAGCCGATAGAGTTGTTTTGGCAGCATGGTAAGCAG
TACGTGAGCTTCAACTTTCTGCTGAAGCAAAAAATGCACCAGGTGTGGGA
GCAGATTCGCAAAGGTTGGTACGGGGACCCGATGTGGCCAGAGTAGGAGG
GGGGGTGCAACGCAGCCGATCGTTCCAAGTTGGTTGCGTACACCATTGGC
GAGATGAACAGGTGGATCAAGGATCGTGATGGACAGCTGCGTGGTACGAT
AGGTAACCTTGAAGTTCTACAAGGGTGTGATCACGACGATGTATCACGTG
TGAACGAGGCCGATGATGGGTTGGGGGAGCAGCTTGAACAGGATGAGGAT
CAGTGGGATGTGGGGGACGCCAACGATGAGATTGAGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig21631:474..3012-

>mRNA_H-paniculata_contig21631.5714.1 ID=mRNA_H-paniculata_contig21631.5714.1|Name=mRNA_H-paniculata_contig21631.5714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig21631:474..3012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTGTTTGCTCTTCGCAAGGACGGCGTCTCTAAGAATCAAGCAGT
GCTTCAGATGCTGCTGTTTGCTCTTCGCAAGGACGGCGTCTCTAAGAATC
AAGCAGTGCTTCAGGTGGCAAGCACCTTCAAGATCGGCCATTCGAAAGTC
AGAGACGTCAACAAGCACTGGTGCGACCGCAACACCCAGCTGGAAACCAC
CGGCGAAGGAAGAGACAAGGTCACCAAGAACGACGACGGCCGACGACGTC
TCACCCAAGATCAGGAGGACCAGCTTTACAAGTTATCAACGACGAGCACA
AAGCCGGGCGCCAAGTCTTTCGCTGTACGGTGGCGGAGTGGATGAGTGGC
AAGCACCTTCAAGATCGGCCATTCGAAAGTCAGAGACGTCAACAAGCACT
GGTGCGACCGCAACACCCAGCTGGAAACCACCGGCGAAGGAAGAGACAAG
GTCACCAAGAACGACGACGGCCGACGACGTCTCACCCAAGATCAGGAGGA
CCAGCTTTACAAGTTATCAACGACGAGCACAAAGCCGGGCGCCAAGTCTT
TCGCTGTACGGTGGCGGAGTGGATGA
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