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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Taxonomic scope | Eukaryota |
| Seed ortholog score | 66.2 |
| Seed ortholog evalue | 8.4e-09 |
| Seed eggNOG ortholog | 2880.D7FQY9 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 29R65@1,2RXAD@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-09_003220.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 778 |
| Cds size | 261 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2163.5712.1 >prot_H-paniculata_contig2163.5712.1 ID=prot_H-paniculata_contig2163.5712.1|Name=mRNA_H-paniculata_contig2163.5712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MSCRVSKTSEGFTDLLATVEGVFMADTMTARVGVKRRGVSIYYFDCARCD
DVEFEEEFPHEVDHTTAKVVFSRYKAELHLTVRLLV* back to topmRNA from alignment at H-paniculata_contig2163:56..3041- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2163.5712.1 ID=mRNA_H-paniculata_contig2163.5712.1|Name=mRNA_H-paniculata_contig2163.5712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2986bp|location=Sequence derived from alignment at H-paniculata_contig2163:56..3041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGGGAGTTTGGAGGGTCTCAGGCTCCCCAAAATGAGTTGCCGTGTTT
CGAAGACGAGCGAGGGGTTCACCGATTTGTTGGCCACAGTGGAGGTGATG
ATAGTGCCATGTTATATGATGTGATGTGATGGCAAGGTTGTTTGGATCTA
ATTGTATTGGTGGCAACGTTGTATCTTGTTTATTGTTATTTGTCATGATC
CACTGCTGTTGCTGTTGGTTGTTCCTGGTGCTGGTGCCTGATGTTTTGTG
GTGTGCGTCCGCCTGACGCAAGGATAGTACTCTATGAAACATGTACACCA
GGTATAGCTGGCTCAACGTGAACATGTTGAGGATGATCTTGGGTCAAGCA
GCCGTGTTGCAAAACCCTAACTTGGGGAAAAGCAAGGGAAAAGGGGCGTT
TTGACATCAAGCCGTGGATACTTCAATTTTAGGCGCCCCCAATCTACCAA
ATAAACAGCGAGGCTGTACATACGAATTACCCTGCTTCTATCCCCCCCAC
CCCATCCCCCCCTTCGTGTCTGGCTGAAATCGTTTTTTTCGGGGTTTTTC
GATTACCTGTATTTGTCGCTTTTGTTTTCGGCGGGCCGTTGTACAAAGGC
GAAAGTGGCAACTCCACATTCAGCTATTTGGCATCCGATGAAGATATTAT
GATTGCTCCATTTTCTTGCTTAAGGTTCAAACACTCATGAACGGCTTCTA
TTGGGGACTTTGATTGATTGCATCATATCAACCTCGTCCTCCTCATGCTC
ATTTACCCGTGTGCTTCCTACCATATATATATATATACATACACACACAA
ATTCCAGGGTGTTTTTATGGCCGACACGATGACGGCTCGTGTGGGCGTGA
AACGCAGAGGCGTTTCGATCTACTACTTCGATTGTGCGCGCTGCGATGAC
GTGGAGTTCGAGGTACGTTGTGTGCTGTGTGCTGTATGCTGTATGCTAGT
GCGTTGTGTGCTGTTTGCATCCATATATGTGTGCATGCTAAAAGACTGAG
AGGGATAGACGATGTATTTCTTGCGTTACAATATCTTATCTGCCGTGGCA
GAGTTGCACCCCCCCCTCAAAGCAAGACGAATAATTAGTTCGAGCAACTG
CTGACAAAAACGAAAAAGTACGCGTCTGAATTTCAGCATGTGCCGGATGG
ATGAGGGATGATGACACATAGAATAGAGCAAGTGTTGACCTCCTGTTTGT
TCGTGTGATGATACTTTGTATTCGCCGTAGCACTACTAGCTGAGCCCAGC
AAGAGAGACCAAAAACATTTCACGGGCATTACTCACTTGATTTGCCGGAG
TTTGGACTGAAATTTTGAGGGTAGGTGCTCATCAAAATTTCGGAGGCTTC
TACTGATGATACCTTCTGATTTATTTATTTTTCGAAGATATATACGGATC
TTTGTACCCTAAAATCATTCACGAGCCACAATTTCGGAACAAGAAAATCA
AAAGGTATCATCAATAGAGGTCTCCGAAATTTTGATGCGCATCTACTCTC
AAAATTTCAGGTCCAAACTCCAATAAACCAGGTGAGAAATGCCTGTTTTG
TAGAAGTATTACGTACTAATCCCACACAAGGACGTACATATTGTACCACA
ATTTTGCTTCACCCATAACTTTGGAACGGTGGCGAGTTGGGAGCTCTAAC
CGGTATCGCGAAAATCGTCGTGGTGTGAGCAATATGCACATCAATTTTGG
TAACAATCGAGCATATGCGTATCATACTTGAATTTTGTATCAACACATTT
GGAAAATTACAGCTAGCAGTCCATATATCGTATCGTCATATTAATAGTTT
GAAACTCTGAAAGTGCTCGGATTCGCCGATCAGAGCGCGTGGCGCACTCC
GTGGTGCATACATTGTTACAAGCAGTCCCACGTTTGTAGTAGTTTTCGCT
TTGGATCGTGACATTGCCCTGTGGGACGTTTTTGATGTTTTTTAGTGAGC
CCAGCTTGTAGATGCTCCCAGGCACATGGAAAATAAAGGTGCTCATGCTG
AGCCTTCAGGTGAATAGTTTTTGTTCTTTACGTTTTGTAACCCAAACAAT
TTTTGGAAGTTGCTTTAGTCGTCCGAGGAGTGTAGCTTTGATACGTGTTT
GGCCTTTTTCACCTCTTGTCGCATGGCGAATAAAGCCCAGCGAAGGAAAA
GCACACTTGTTGTTTTTACCATCTTCCATAGCGTTACTGTTGCTGTTGCT
ATTGGGTGATACAGTGACTATTGTTCGGACATACGGCGTCTCATGTATGC
GAAAATTGACCCTGACTTGAATTGGCTGGCTGACTGACTGACTGACTGCC
CGTGTAGCTACCACCCTGTACCTTTGTTCACCCCTCTCGCCAATCGGAGT
TTTTGGTGCCCCCCCCTCCTGTCCTCTTCCGTTGCCTCGTCTTGCTTCTA
TACGCAGGAAGAGTTTCCACATGAAGTGGACCACACTACAGCCAAGGTAG
TCTTCTCGCGGTACAAAGCTGAACTTCATCTGACCGTCCGGCTACTAGTC
TAGGCGGCGGCTCACACGAGCTATATTTTAGACGTATTTCGAGGGATAGG
AGTTGGCGTGTATATATGTTGGGGACACCTGGATATATACATTGTCGCGG
GATAAATTTGGCGTGGATGAGCACGATAACCAAGAGTATACCCGCAGATT
TCCTGCTGTCGTGAAAACTGCAGGGATAGCACGAACACCGTTATCCCGTT
GATATCCGATAAAATTAGAATTGACAGTTGACAGTTAACCTTGTAGTATT
GTTGTCACTCCCCATGTGCCTATCCACCAGGTGGCACAAAAGTTTGGATC
CGGTATTAGGATGAGGATTCACCTTTTGTGAGAGTGTTTTGTATTGTATC
TTGTCTGTCGGTCGCATTTTACCTATTTCATGTTTAAATGTATCGGCCTT
GTCCGGTCAATATTCCCCTGTGAGGATTTTTTTTTTTTAACCCCCGAAAG
GCTAAGGCAAAAACCTTTATCCGATGCTTCCATACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2163:56..3041- >mRNA_H-paniculata_contig2163.5712.1 ID=mRNA_H-paniculata_contig2163.5712.1|Name=mRNA_H-paniculata_contig2163.5712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig2163:56..3041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTGCCGTGTTTCGAAGACGAGCGAGGGGTTCACCGATTTGTTGGC
CACAGTGGAGATGAGTTGCCGTGTTTCGAAGACGAGCGAGGGGTTCACCG
ATTTGTTGGCCACAGTGGAGGGTGTTTTTATGGCCGACACGATGACGGCT
CGTGTGGGCGTGAAACGCAGAGGCGTTTCGATCTACTACTTCGATTGTGC
GCGCTGCGATGACGTGGAGTTCGAGGGTGTTTTTATGGCCGACACGATGA
CGGCTCGTGTGGGCGTGAAACGCAGAGGCGTTTCGATCTACTACTTCGAT
TGTGCGCGCTGCGATGACGTGGAGTTCGAGGAAGAGTTTCCACATGAAGT
GGACCACACTACAGCCAAGGTAGTCTTCTCGCGGTACAAAGCTGAACTTC
ATCTGACCGTCCGGCTACTAGTCTAGGAAGAGTTTCCACATGAAGTGGAC
CACACTACAGCCAAGGTAGTCTTCTCGCGGTACAAAGCTGAACTTCATCT
GACCGTCCGGCTACTAGTCTAG back to top
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