mRNA_H-paniculata_contig21626.5709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21626.5709.1
Unique NamemRNA_H-paniculata_contig21626.5709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.020e-35
Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
            +V+TPRLGFDLSLRQAH Y G+R ALVGDAAHT+HPMAGQGLNLG+ADADALARAVL+GR SGTDVGS  LL RYEEERK +
Sbjct:  442 EVVTPRLGFDLSLRQAHKYTGDRMALVGDAAHTVHPMAGQGLNLGIADADALARAVLEGRLSGTDVGSKTLLGRYEEERKTE 523          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.170e-33
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
            +V+TPRLGFDLSLRQAH Y G R ALVGDAAHT+HPMAGQGLNLG+ADADALARAVL+GR SGTDVGS  LL  YE++RK +
Sbjct:  344 EVVTPRLGFDLSLRQAHRYTGARMALVGDAAHTVHPMAGQGLNLGIADADALARAVLEGRLSGTDVGSTTLLGHYEQDRKTE 425          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A835Z6E6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.260e-22
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   13 PRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
            PRLGFDLSL Q+ +Y   R ALVGDAAHT+HPMAGQGLNLG++DA+ALA A+ +   SG D+GS   L+RY+ +R+++
Sbjct:  381 PRLGFDLSLAQSAAYTAPRVALVGDAAHTVHPMAGQGLNLGLSDAEALAAAIREAALSGGDIGSVQALSRYDSDRRMR 458          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: UPI000BBE5065 (ubiquinone biosynthesis monooxygenase COQ6, mitochondrial-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE5065)

HSP 1 Score: 94.7 bits (234), Expect = 3.470e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
            R+ F LSLR A  Y+  R ALVGD+AHT+HP+AGQG+NLG ADA AL+RA+ +G   GTD+G A LL RYE ERK
Sbjct:  253 RMMFPLSLRHAKDYVSNRVALVGDSAHTVHPLAGQGVNLGFADASALSRAIAEGIALGTDIGEANLLKRYEAERK 327          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A7S3XZA2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZA2_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 4.340e-21
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
            R G DL L+QA  + G R ALVGDAAHT+HPMAGQGLNLG+ D + L   +++G ++G D+GS  LLA Y+ +R+
Sbjct:    4 RFGLDLRLQQARRFAGRRLALVGDAAHTVHPMAGQGLNLGLGDVEKLTEIIIEGLKTGQDIGSPTLLATYDSDRR 78          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: C0P9B1_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=C0P9B1_MAIZE)

HSP 1 Score: 94.4 bits (233), Expect = 4.530e-21
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKV 243
            +V++ R+ F LSL  +H Y+ +R ALVGDAAHT+HP+AGQG+NLG  DA ALA+ + +G   G+DVG   LL RYE+ERK 
Sbjct:  241 RVVSERMAFPLSLMHSHDYVSKRLALVGDAAHTVHPLAGQGVNLGFGDAAALAKVIAEGVSVGSDVGDLTLLQRYEKERKA 321          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: UPI00053C995C (ubiquinone biosynthesis monooxygenase COQ6, mitochondrial isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C995C)

HSP 1 Score: 95.1 bits (235), Expect = 4.950e-21
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
            R+ F LSLR A  Y  +R AL+GDAAHT+HP+AGQG+NLG ADA AL++A+ +G   GTD+G A LL RYE ERK +
Sbjct:  385 RMAFPLSLRHAKDYASKRVALIGDAAHTVHPLAGQGVNLGFADASALSKAITEGIALGTDIGEANLLRRYERERKSE 461          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A804P699_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804P699_MAIZE)

HSP 1 Score: 94.4 bits (233), Expect = 5.320e-21
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKV 243
            +V++ R+ F LSL  +H Y+ +R ALVGDAAHT+HP+AGQG+NLG  DA ALA+ + +G   G+DVG   LL RYE+ERK 
Sbjct:  260 RVVSERMAFPLSLMHSHDYVSKRLALVGDAAHTVHPLAGQGVNLGFGDAAALAKVIAEGVSVGSDVGDLTLLQRYEKERKA 340          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A6J0P7C4_RAPSA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=13 Tax=Brassicaceae TaxID=3700 RepID=A0A6J0P7C4_RAPSA)

HSP 1 Score: 94.7 bits (234), Expect = 6.620e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
            R+ F LSLR A  Y+  R ALVGD+AHT+HP+AGQG+NLG ADA AL+RA+ +G   GTD+G A LL RYE ERK
Sbjct:  374 RMMFPLSLRHAKDYVSNRVALVGDSAHTVHPLAGQGVNLGFADASALSRAIAEGIALGTDIGEANLLKRYEAERK 448          
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A0D3D586_BRAOL (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3D586_BRAOL)

HSP 1 Score: 94.7 bits (234), Expect = 7.710e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
            R+ F LSLR A  Y+  R ALVGD+AHT+HP+AGQG+NLG ADA AL+RA+ +G   GTD+G A LL RYE ERK
Sbjct:  648 RMMFPLSLRHAKDYVSNRVALVGDSAHTVHPLAGQGVNLGFADASALSRAIAEGIALGTDIGEANLLKRYEAERK 722          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1J7_ECTSI3.020e-3581.71Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE1.170e-3378.05FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A835Z6E6_9STRA5.260e-2260.26Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
UPI000BBE50653.470e-2162.67ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A7S3XZA2_HETAK4.340e-2154.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
C0P9B1_MAIZE4.530e-2155.56Uncharacterized protein n=2 Tax=Zea mays TaxID=457... [more]
UPI00053C995C4.950e-2159.74ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A804P699_MAIZE5.320e-2155.56Uncharacterized protein n=2 Tax=Zea mays TaxID=457... [more]
A0A6J0P7C4_RAPSA6.620e-2162.67Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A0D3D586_BRAOL7.710e-2162.67Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21626contigH-paniculata_contig21626:436..1086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue6.3e-30
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.2265975-CDS-H-paniculata_contig21626:435..5851622929586.2265975-CDS-H-paniculata_contig21626:435..585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21626 436..585 -
1691480924.844625-CDS-H-paniculata_contig21626:435..5851691480924.844625-CDS-H-paniculata_contig21626:435..585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21626 436..585 -
1622929586.245177-CDS-H-paniculata_contig21626:987..10861622929586.245177-CDS-H-paniculata_contig21626:987..1086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21626 988..1086 -
1691480924.856824-CDS-H-paniculata_contig21626:987..10861691480924.856824-CDS-H-paniculata_contig21626:987..1086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21626 988..1086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21626.5709.1prot_H-paniculata_contig21626.5709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21626 436..1086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21626.5709.1

>prot_H-paniculata_contig21626.5709.1 ID=prot_H-paniculata_contig21626.5709.1|Name=mRNA_H-paniculata_contig21626.5709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADAD
ALARAVLDGRRSGTDVGSAILLARYEEERKVQ*
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mRNA from alignment at H-paniculata_contig21626:436..1086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21626.5709.1 ID=mRNA_H-paniculata_contig21626.5709.1|Name=mRNA_H-paniculata_contig21626.5709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at H-paniculata_contig21626:436..1086- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTTGACACCGCGGTTAGGCTTTGATCTGTCGTTGCGGCAGGCGCA CAGCTACATTGGCGAACGAGCGGCTTTAGTTGGGGATGCTGCTCACACGG TGAGACAGACATACAGGCAGCAGGTAGGCAGGTAGACAGGCGGATATTTT TGCATGGGAATGAAATTTCTGTGTATCAGGAAAGTTGCTTGCAAGTTTGG GGCAATGTTGTATATGTCGGTGACCCATGACTTGTTTTTTGTGAAGGTTT GAACTTTCATGTGATGAAATAAATACATGCAAGTTTTGGATGTGTGTGTT TGTGTGTGCAGAAAATTTGCATTTAAATATATATCCGAAGTGTTGTGCTT GAATTTTTCTTGGTGCTTCCTCACTCGCTTGTGTGCGTTCTCTTCCTTTA TATATTAATATTTCTGTTGATTGGATCGGCGCGGAATTGACAATTTCTCC TTTTTTTTTTGTTTCTTTTTTCTTGTATTAATATTTTTTTCGTTTTTGAA GATTCACCCTATGGCTGGCCAAGGTCTTAATTTAGGCATGGCAGATGCGG ATGCCTTAGCACGAGCCGTACTGGATGGTCGGCGGTCGGGGACGGACGTT GGCTCGGCGATCCTTTTGGCTCGATACGAGGAGGAGAGAAAGGTACAGTA G
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Coding sequence (CDS) from alignment at H-paniculata_contig21626:436..1086-

>mRNA_H-paniculata_contig21626.5709.1 ID=mRNA_H-paniculata_contig21626.5709.1|Name=mRNA_H-paniculata_contig21626.5709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig21626:436..1086- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTTGACACCGCGGTTAGGCTTTGATCTGTCGTTGCGGCAGGCGCA
CAGCTACATTGGCGAACGAGCGGCTTTAGTTGGGGATGCTGCTCACACGC
AGGTGTTGACACCGCGGTTAGGCTTTGATCTGTCGTTGCGGCAGGCGCAC
AGCTACATTGGCGAACGAGCGGCTTTAGTTGGGGATGCTGCTCACACGAT
TCACCCTATGGCTGGCCAAGGTCTTAATTTAGGCATGGCAGATGCGGATG
CCTTAGCACGAGCCGTACTGGATGGTCGGCGGTCGGGGACGGACGTTGGC
TCGGCGATCCTTTTGGCTCGATACGAGGAGGAGAGAAAGGTACAGTAGAT
TCACCCTATGGCTGGCCAAGGTCTTAATTTAGGCATGGCAGATGCGGATG
CCTTAGCACGAGCCGTACTGGATGGTCGGCGGTCGGGGACGGACGTTGGC
TCGGCGATCCTTTTGGCTCGATACGAGGAGGAGAGAAAGGTACAGTAG
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