mRNA_H-paniculata_contig21626.5709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI) HSP 1 Score: 134 bits (338), Expect = 3.020e-35 Identity = 67/82 (81.71%), Postives = 74/82 (90.24%), Query Frame = 1
Query: 1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
+V+TPRLGFDLSLRQAH Y G+R ALVGDAAHT+HPMAGQGLNLG+ADADALARAVL+GR SGTDVGS LL RYEEERK +
Sbjct: 442 EVVTPRLGFDLSLRQAHKYTGDRMALVGDAAHTVHPMAGQGLNLGIADADALARAVLEGRLSGTDVGSKTLLGRYEEERKTE 523
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.170e-33 Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1
Query: 1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
+V+TPRLGFDLSLRQAH Y G R ALVGDAAHT+HPMAGQGLNLG+ADADALARAVL+GR SGTDVGS LL YE++RK +
Sbjct: 344 EVVTPRLGFDLSLRQAHRYTGARMALVGDAAHTVHPMAGQGLNLGIADADALARAVLEGRLSGTDVGSTTLLGHYEQDRKTE 425
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A835Z6E6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 5.260e-22 Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 13 PRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
PRLGFDLSL Q+ +Y R ALVGDAAHT+HPMAGQGLNLG++DA+ALA A+ + SG D+GS L+RY+ +R+++
Sbjct: 381 PRLGFDLSLAQSAAYTAPRVALVGDAAHTVHPMAGQGLNLGLSDAEALAAAIREAALSGGDIGSVQALSRYDSDRRMR 458
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: UPI000BBE5065 (ubiquinone biosynthesis monooxygenase COQ6, mitochondrial-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE5065) HSP 1 Score: 94.7 bits (234), Expect = 3.470e-21 Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
R+ F LSLR A Y+ R ALVGD+AHT+HP+AGQG+NLG ADA AL+RA+ +G GTD+G A LL RYE ERK
Sbjct: 253 RMMFPLSLRHAKDYVSNRVALVGDSAHTVHPLAGQGVNLGFADASALSRAIAEGIALGTDIGEANLLKRYEAERK 327
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A7S3XZA2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZA2_HETAK) HSP 1 Score: 89.4 bits (220), Expect = 4.340e-21 Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
R G DL L+QA + G R ALVGDAAHT+HPMAGQGLNLG+ D + L +++G ++G D+GS LLA Y+ +R+
Sbjct: 4 RFGLDLRLQQARRFAGRRLALVGDAAHTVHPMAGQGLNLGLGDVEKLTEIIIEGLKTGQDIGSPTLLATYDSDRR 78
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: C0P9B1_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=C0P9B1_MAIZE) HSP 1 Score: 94.4 bits (233), Expect = 4.530e-21 Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKV 243
+V++ R+ F LSL +H Y+ +R ALVGDAAHT+HP+AGQG+NLG DA ALA+ + +G G+DVG LL RYE+ERK
Sbjct: 241 RVVSERMAFPLSLMHSHDYVSKRLALVGDAAHTVHPLAGQGVNLGFGDAAALAKVIAEGVSVGSDVGDLTLLQRYEKERKA 321
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: UPI00053C995C (ubiquinone biosynthesis monooxygenase COQ6, mitochondrial isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C995C) HSP 1 Score: 95.1 bits (235), Expect = 4.950e-21 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKVQ 246
R+ F LSLR A Y +R AL+GDAAHT+HP+AGQG+NLG ADA AL++A+ +G GTD+G A LL RYE ERK +
Sbjct: 385 RMAFPLSLRHAKDYASKRVALIGDAAHTVHPLAGQGVNLGFADASALSKAITEGIALGTDIGEANLLRRYERERKSE 461
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A804P699_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804P699_MAIZE) HSP 1 Score: 94.4 bits (233), Expect = 5.320e-21 Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERKV 243
+V++ R+ F LSL +H Y+ +R ALVGDAAHT+HP+AGQG+NLG DA ALA+ + +G G+DVG LL RYE+ERK
Sbjct: 260 RVVSERMAFPLSLMHSHDYVSKRLALVGDAAHTVHPLAGQGVNLGFGDAAALAKVIAEGVSVGSDVGDLTLLQRYEKERKA 340
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A6J0P7C4_RAPSA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=13 Tax=Brassicaceae TaxID=3700 RepID=A0A6J0P7C4_RAPSA) HSP 1 Score: 94.7 bits (234), Expect = 6.620e-21 Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
R+ F LSLR A Y+ R ALVGD+AHT+HP+AGQG+NLG ADA AL+RA+ +G GTD+G A LL RYE ERK
Sbjct: 374 RMMFPLSLRHAKDYVSNRVALVGDSAHTVHPLAGQGVNLGFADASALSRAIAEGIALGTDIGEANLLKRYEAERK 448
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Match: A0A0D3D586_BRAOL (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3D586_BRAOL) HSP 1 Score: 94.7 bits (234), Expect = 7.710e-21 Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 16 RLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADALARAVLDGRRSGTDVGSAILLARYEEERK 240
R+ F LSLR A Y+ R ALVGD+AHT+HP+AGQG+NLG ADA AL+RA+ +G GTD+G A LL RYE ERK
Sbjct: 648 RMMFPLSLRHAKDYVSNRVALVGDSAHTVHPLAGQGVNLGFADASALSRAIAEGIALGTDIGEANLLKRYEAERK 722 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21626.5709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21626.5709.1 >prot_H-paniculata_contig21626.5709.1 ID=prot_H-paniculata_contig21626.5709.1|Name=mRNA_H-paniculata_contig21626.5709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp QVLTPRLGFDLSLRQAHSYIGERAALVGDAAHTIHPMAGQGLNLGMADADback to top mRNA from alignment at H-paniculata_contig21626:436..1086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21626.5709.1 ID=mRNA_H-paniculata_contig21626.5709.1|Name=mRNA_H-paniculata_contig21626.5709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at H-paniculata_contig21626:436..1086- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21626:436..1086- >mRNA_H-paniculata_contig21626.5709.1 ID=mRNA_H-paniculata_contig21626.5709.1|Name=mRNA_H-paniculata_contig21626.5709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig21626:436..1086- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |