mRNA_H-paniculata_contig2162.5707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2162.5707.1
Unique NamemRNA_H-paniculata_contig2162.5707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A6H5L7W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W2_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 5.200e-118
Identity = 169/203 (83.25%), Postives = 185/203 (91.13%), Query Frame = 1 
Query:   13 KLQVHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHAHRVKR 621
            K+QVHKRQEKN +LRH+RNV +EITPGL+ADFVLGPK C VFISLRYHLLYPHYLIQRIKELS HFTLRVLLCHVDVDD E  LL+IN+MAV NDFT VLAWSLQEAARYLETYK+YE KSA+SIQEKVD+D+L KLQDCFGVVRSVNKSD+LTLASNFGSLKAVCDA+AGEL+LCPGLG+KKV+RIHEALHEPL   H   R
Sbjct:   80 KIQVHKRQEKNSMLRHLRNVAFEITPGLVADFVLGPKTCAVFISLRYHLLYPHYLIQRIKELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVSRIHEALHEPLVRKHSSSR 282
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: D7G4P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P9_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 1.660e-80
Identity = 126/161 (78.26%), Postives = 140/161 (86.96%), Query Frame = 1 
Query:  163 YPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHAH---RVKRSLPEG 636
            +PH  +Q   ELS HFTLRVLLCHVDVDD E  LL+IN+MAV NDFT VLAWSLQEAARYLETYK+YE KSA+SIQEKVD+D+L KLQDCFGVVRSVNKSD+LTLASNFGSLKAVCDA+AGEL+LCPGLG+KKVARIHEALHEPL   H   R+KR+  EG
Sbjct:    5 HPHIFMQ---ELSGHFTLRVLLCHVDVDDSETPLLEINKMAVFNDFTLVLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASNFGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSSSRLKRNRTEG 162
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A835ZCX2_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX2_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.160e-65
Identity = 103/182 (56.59%), Postives = 134/182 (73.63%), Query Frame = 1 
Query:   61 IRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHA 606
            IRNV YE   G++ DFV+ P AC +F+S+RYH L P Y+ QRI+EL   F LR+LL  VD DD    LL++N+MAV  +FT +LAWS  EAARYLET+K++E K   SIQEKV++DYLAK QD    V +VN++D++TL S FGSL+ +C+AS  E+ALCPGLGDKKV  +H+ALH+P   A
Sbjct:    7 IRNVEYEFATGIMPDFVISPTACALFLSMRYHQLKPTYIAQRIEELRTSFRLRLLLVLVDQDDNVNLLLELNKMAVARNFTLLLAWSWPEAARYLETFKAFENKPPTSIQEKVNSDYLAKAQDALCTVHAVNRTDVVTLLSTFGSLQGLCEASMEEMALCPGLGDKKVVALHDALHQPFFSA 188
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A5C7I906_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7I906_9ROSI)

HSP 1 Score: 213 bits (541), Expect = 3.070e-64
Identity = 102/204 (50.00%), Postives = 144/204 (70.59%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHAHRVKRSLPE 633
            V  RQ+ NP+L+HIRNV +     ++ D++LG  +C +++SLRYHLL+P YL  RI+EL ++F LRV+LCH+DVDD  K LL++ + A+L+D T + AWSL+E  RYLET K YE K A+ IQ ++D+DYL++L      VRSVNK+D++TL S FGSL  + DAS  +LA CPG+G++KV R+H+  HEP         S+PE
Sbjct:  105 VSHRQKGNPLLKHIRNVRWAFA-DVVCDYMLGQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHIDVDDVVKPLLEVTKTAMLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGQMDSDYLSRLTHSLTTVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLHDTFHEPFKRVVTSHPSVPE 307
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A0D9XLL6_9ORYZ (HHH_2 domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XLL6_9ORYZ)

HSP 1 Score: 212 bits (539), Expect = 5.220e-64
Identity = 102/195 (52.31%), Postives = 140/195 (71.79%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHA 606
            V  RQ+ NP+L+HIRN  +     ++ D+VLG  +C ++ISLRYHLL+P YL  RIKEL ++F LRV+LCH+DV+D  K L ++ R A+L+D T +  WSL+E  RYLET K YE KSA+SI+E +DNDYL++L      +R VNK+D++TL S+FGSL  V +AS  ELA CPG+G++KV R+H+  HEP   A
Sbjct:  111 VSHRQKGNPLLKHIRNARWTYA-DIVPDYVLGQSSCALYISLRYHLLHPDYLYYRIKELQKNFKLRVILCHIDVEDVVKPLHEVTRTALLHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHALTSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRA 304
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: J3N456_ORYBR (HHH_2 domain-containing protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3N456_ORYBR)

HSP 1 Score: 211 bits (538), Expect = 6.450e-64
Identity = 100/195 (51.28%), Postives = 140/195 (71.79%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHA 606
            V  RQ+ NP+L+HIRN  +     ++ D+VLG  +C +++S+RYHLL+P YL  RI+EL ++F LRV+LCH+DV+D  K L ++ R A+L+D T +  WSL+E  RYLET K YE KSA+SI+E +DNDYL++L      +R VNK+D++TL SNFGSL  V +AS  ELA CPG+G++KV R+H+  HEP   A
Sbjct:  103 VSHRQKGNPLLKHIRNARWTFA-DVVPDYVLGQSSCALYLSVRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVVKPLHEVTRTAILHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHALTSIRHVNKTDVVTLGSNFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRA 296
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A7J8YLC7_GOSAI (Uncharacterized protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A7J8YLC7_GOSAI)

HSP 1 Score: 208 bits (530), Expect = 2.250e-63
Identity = 100/204 (49.02%), Postives = 140/204 (68.63%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHAHRVKRSLPE 633
            V  RQ+ NP+L+HIRNV +     +  D++LG   C +++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDV+D  K LL++ + A+L+D T +  WSL+E  RYLET K YE K A+ IQ ++D DYL++L      VR VNK+D++TL S FGSL ++ DAS  +LA CPG+G++KV R+H+  HEP         S+PE
Sbjct:   40 VSHRQKGNPLLKHIRNVRWAFA-DVACDYLLGQNTCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNHALTTVRRVNKTDVVTLGSTFGSLSSIMDASMEDLARCPGIGERKVKRLHDTFHEPFKRIVSSNPSVPE 242
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A2G3A240_CAPAN (DNA excision repair protein ERCC-1 n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G3A240_CAPAN)

HSP 1 Score: 210 bits (534), Expect = 2.710e-63
Identity = 99/204 (48.53%), Postives = 143/204 (70.10%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSHAHRVKRSLPE 633
            V  RQ+ NP+L+HIRNV +     ++ D++LGP  C +++SLRYHLL+P YL  RI+EL ++F LR++LCHVDV+D  K LL++ R ++L+D T +  WSL+E  RYLET K YE K A+ IQ ++D DYL++L      +R VNK+D++TL S FGSL  V DAS  +LA CPG+G++KV R+++A HEP       ++ +PE
Sbjct:   99 VSNRQKGNPLLKHIRNVRWAFA-DIVCDYLLGPNTCALYLSLRYHLLHPDYLYFRIRELQKNFRLRIVLCHVDVEDVVKPLLEVTRTSLLHDCTLLCGWSLEECGRYLETVKVYENKPADLIQGQMDGDYLSRLNHALTAIRHVNKTDVVTLGSTFGSLSHVMDASMEDLARCPGIGERKVKRLYDAFHEPFKREVPKRQCIPE 301
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: A0A1D1ZHX7_9ARAE (DNA excision repair protein ERCC-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZHX7_9ARAE)

HSP 1 Score: 207 bits (527), Expect = 2.750e-63
Identity = 97/192 (50.52%), Postives = 140/192 (72.92%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPL 597
            V  RQ+ NP+L+HIRNV +     ++ D++LG  +C ++ISLRYHLL+P Y+  RI+EL ++F LRV+LCH+DV+D  K LL++ R A+L+D + +  WSL+E  RYLET K YE KSA+SI+E++D DYL++L      +R VNK+D++TL S FGSL  + DAS  ELA CPG+G++KV R+++  HEP 
Sbjct:   18 VSHRQKGNPLLKHIRNVRWTFA-DVVCDYLLGQNSCALYISLRYHLLHPDYVYYRIRELQKNFKLRVVLCHIDVEDVAKPLLEVTRTALLHDCSLLCGWSLEECGRYLETIKVYENKSADSIREQMDTDYLSRLTHALTTIRHVNKTDVVTLGSAFGSLSRIMDASMEELARCPGIGERKVQRLYDTFHEPF 208
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BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Match: O82008_LILLO (Nucleotide repair protein (Fragment) n=1 Tax=Lilium longiflorum TaxID=4690 RepID=O82008_LILLO)

HSP 1 Score: 206 bits (524), Expect = 4.180e-63
Identity = 97/192 (50.52%), Postives = 139/192 (72.40%), Query Frame = 1 
Query:   22 VHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRYHLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFTFVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSVNKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPL 597
            V  RQ+ NP+L+HIRNV + +   ++ D+++G  +C +++SLRYHLL+P YL  RI+EL ++F LRV+LCHVDV+D  K LL++ R A+L+D T +  WSL+E  RYLET K YE K A+SI+E++D DYL++L      VR VNK+D +TL + FGSL  + DAS  +LA CPG+G++KV R+H+  HEP 
Sbjct:   35 VSHRQKGNPLLKHIRNVKW-VFADIVCDYLVGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTRTAMLHDCTLLCGWSLEECGRYLETIKVYENKPADSIREQMDTDYLSRLTQALTSVRHVNKTDAVTLGTAFGSLSGIMDASLEDLARCPGIGERKVKRLHDTFHEPF 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2162.5707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7W2_9PHAE5.200e-11883.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P9_ECTSI1.660e-8078.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCX2_9STRA1.160e-6556.59Restriction endonuclease type II-like protein n=1 ... [more]
A0A5C7I906_9ROSI3.070e-6450.00Uncharacterized protein n=1 Tax=Acer yangbiense Ta... [more]
A0A0D9XLL6_9ORYZ5.220e-6452.31HHH_2 domain-containing protein n=1 Tax=Leersia pe... [more]
J3N456_ORYBR6.450e-6451.28HHH_2 domain-containing protein n=1 Tax=Oryza brac... [more]
A0A7J8YLC7_GOSAI2.250e-6349.02Uncharacterized protein n=6 Tax=Malvoideae TaxID=2... [more]
A0A2G3A240_CAPAN2.710e-6348.53DNA excision repair protein ERCC-1 n=4 Tax=Capsicu... [more]
A0A1D1ZHX7_9ARAE2.750e-6350.52DNA excision repair protein ERCC-1 n=1 Tax=Anthuri... [more]
O82008_LILLO4.180e-6350.52Nucleotide repair protein (Fragment) n=1 Tax=Liliu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2162contigH-paniculata_contig2162:17891..20079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue5e-63
Seed eggNOG ortholog2880.D7G4P9
Preferred nameERCC1
KEGG koko:K01230,ko:K03514,ko:K10849,ko:K10898,ko:K14850
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko01524,ko03018,ko03420,ko03460,ko04141,map00510,map00513,map01100,map01524,map03018,map03420,map03460,map04141
KEGG ModuleM00073,M00074,M00393,M00413
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000228,GO:0000280,GO:0000428,GO:0000710,GO:0000712,GO:0000720,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000733,GO:0000735,GO:0000736,GO:0000781,GO:0000784,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001302,GO:0001325,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006290,GO:0006293,GO:0006294,GO:0006295,GO:0006296,GO:0006298,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006949,GO:0006950,GO:0006955,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007548,GO:0007568,GO:0007569,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009653,GO:0009791,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010213,GO:0010224,GO:0010259,GO:0010332,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016591,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019724,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031334,GO:0031593,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033683,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035166,GO:0035264,GO:0035822,GO:0035825,GO:0035861,GO:0036297,GO:0040007,GO:0042113,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043240,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044798,GO:0045002,GO:0045132,GO:0045137,GO:0045165,GO:0045190,GO:0045321,GO:0045934,GO:0045935,GO:0046483,GO:0046546,GO:0046649,GO:0046661,GO:0046982,GO:0046983,GO:0048232,GO:0048256,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048569,GO:0048583,GO:0048585,GO:0048589,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061458,GO:0061695,GO:0061819,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070522,GO:0070911,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090575,GO:0090656,GO:0090734,GO:0090737,GO:0097159,GO:0098687,GO:0098813,GO:0104004,GO:0140013,GO:0140030,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903046,GO:1904353,GO:1904354,GO:1904429,GO:1904431,GO:1904505,GO:1904506,GO:1905764,GO:1905765,GO:1990234,GO:1990391,GO:2001020,GO:2001021,GO:2001251,GO:2001252
EggNOG free text desc.meiotic mismatch repair
EggNOG OGsCOG5241@1,KOG2841@2759
EC2.1.1.287,2.7.7.19,3.2.1.113
COG Functional cat.L
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03019,ko03400,ko04131
Exons4
Model size639
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2162.5707.1prot_H-paniculata_contig2162.5707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2162 17891..20076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.0392325-CDS-H-paniculata_contig2162:17890..181331622929586.0392325-CDS-H-paniculata_contig2162:17890..18133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 17891..18133 -
1691480924.7603893-CDS-H-paniculata_contig2162:17890..181331691480924.7603893-CDS-H-paniculata_contig2162:17890..18133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 17891..18133 -
1622929586.0582945-CDS-H-paniculata_contig2162:18882..189511622929586.0582945-CDS-H-paniculata_contig2162:18882..18951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 18883..18951 -
1691480924.7743242-CDS-H-paniculata_contig2162:18882..189511691480924.7743242-CDS-H-paniculata_contig2162:18882..18951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 18883..18951 -
1622929586.080028-CDS-H-paniculata_contig2162:19640..197751622929586.080028-CDS-H-paniculata_contig2162:19640..19775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 19641..19775 -
1691480924.7956238-CDS-H-paniculata_contig2162:19640..197751691480924.7956238-CDS-H-paniculata_contig2162:19640..19775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 19641..19775 -
1622929586.0972588-CDS-H-paniculata_contig2162:19887..200761622929586.0972588-CDS-H-paniculata_contig2162:19887..20076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 19888..20076 -
1691480924.805569-CDS-H-paniculata_contig2162:19887..200761691480924.805569-CDS-H-paniculata_contig2162:19887..20076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 19888..20076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.1172009-UTR-H-paniculata_contig2162:20076..200791622929586.1172009-UTR-H-paniculata_contig2162:20076..20079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2162 20077..20079 -
1691480924.8217392-UTR-H-paniculata_contig2162:20076..200791691480924.8217392-UTR-H-paniculata_contig2162:20076..20079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2162 20077..20079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2162.5707.1

>prot_H-paniculata_contig2162.5707.1 ID=prot_H-paniculata_contig2162.5707.1|Name=mRNA_H-paniculata_contig2162.5707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MGFKLQVHKRQEKNPILRHIRNVPYEITPGLLADFVLGPKACTVFISLRY
HLLYPHYLIQRIKELSRHFTLRVLLCHVDVDDCEKCLLDINRMAVLNDFT
FVLAWSLQEAARYLETYKSYEQKSAESIQEKVDNDYLAKLQDCFGVVRSV
NKSDILTLASNFGSLKAVCDASAGELALCPGLGDKKVARIHEALHEPLSH
AHRVKRSLPEG*
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mRNA from alignment at H-paniculata_contig2162:17891..20079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2162.5707.1 ID=mRNA_H-paniculata_contig2162.5707.1|Name=mRNA_H-paniculata_contig2162.5707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2189bp|location=Sequence derived from alignment at H-paniculata_contig2162:17891..20079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATGGGATTCAAATTGCAGGTTCACAAACGCCAGGAAAAAAATCCGAT
TCTCAGGCATATAAGAAATGTGCCATATGAGATCACGCCCGGGCTCTTGG
CTGACTTCGTCCTCGGCCCGAAGGCTTGCACAGTCTTCATCAGCCTGAGA
TACCATCTTTTGTACCCTCACTACCTCATCCAGAGAATAAAGGTATGACC
GTGAAGATTGGACCACTGTGTTGCTACTCTCAGAGGCTACGCTACGCTCC
ACGCTCATGATGTTTCTTGTGCTTGGTACAAATTTCTCCTCTTGAATTGC
CCAGGAGCTTTCGAGGCACTTCACCCTACGTGTGCTGCTTTGCCATGTAG
ACGTCGATGACTGCGAGAAATGTTTACTCGATATCAACAGGATGGCAGTG
CTGAACGATTTCACGTTCGTATTGGCATGGAGTCTTCAGGTATGAATAGT
GAGTGCTCGACGCTAACAAGTTGATGGTCCTGTACGTCGTCTGTGTTACG
AATGTCATCGTTCTGAAGATGCGGCTTATGATGCCGGATTCTGCTGTACC
GTAAACCCCAAGTATGCCATTCCGCCCGAATCTGCACCGTCAAACTCAGG
GTACTACTAAAGTGGGACGCACTCATCACTCCCTCGTCATATCTCGAGAA
GTACGGCGAATATTTTAATATGGATTTCTTTATCAGTGCCATGAGTGCAC
ACAGAAAAATATTTCTCAGGTCGAAAATGTTGAAAAATCAGCAAGTTAGA
GCCAAAAATCTGGATTTTCCCATGTGAAAATAGGGTTTTCGGGCAATATC
TCGACAATTACAAGGAAAAAAGAAAGTGAAAAGGATTATCATGGCGTAGT
CAATAGAAAGAGGATGAAGGAAATAATAATAAAAAACGTTGAATTGATGA
ATATCCTTCGAATTTACACTGTAATGTTCTAGAGTATGGCAAAAAAACGG
CAATTGCAATAACACACAGATTGAGCTCTGCAGATCAAATCTCCAAAGAA
CCCAAAGTGGGGCATGTTGTGCGAATGCGAAAGCGGCGTATTAAGCAAAA
TGGAGAGTATGATTAGTGTGTCACATTGTAGCAGTAGATAAGCAGTTGAT
GTTTCCGTTGTTTGTTCCGTCCTTGCAGGAGGCTGCAAGGTATCTAGAGA
CGTACAAGTCTTATGAGCAGAAATCTGCAGAGAGTATTCAAGAGAAGGTG
AGGACCCGACTTTCGTGACTTCGCGTTGCAGGTTGAGTATTCATTCGTCG
ACATCTTACCCGCCACTACTCTTCCGTACCATGTACACCATGCTCTCCGA
TGGTAGTTAAAACCTTCTCTATCATTTTTCCGCCATGAACATTTTTCTTT
AGTCTGATCTTGGGGTTGCTGCAGCACCATAGAATAATACAATCAACAAC
ATTCCGGGGGGAAATAAATAATCTTGATAGAAGCTTATATCACGAATCTT
CAGCAGCGGTGCACTTCGCGTGTGTGTTGTGTTTCGTGTTATGACCGAAT
TCCTCAATGTTGCTTTGATCCCCCACACTTGTGTCATAGTAATACCCATT
GCTCGAGGTTGTCACCTGCCTTCATCATACAACAGTACATAGGACTCATG
AAAAAAAACTGTTCTCGCTTAATTCGTCTACATTTGATTTACTGAAGACC
CACGGGCCTATGTACAACCTCAACAAACCGGAAGAGGTAAGTGAACGACA
AACTAGATTCCACTTGAACTCCCAAATAGACAACAAAATCTGTGTAGTCT
CACTGAGAGAACAAAACACAAATTTGAAACATAATGCCACAATCATGGAA
TCTCCAGGGCTATTTTCAACCAAGTGATTGCGAAAATATATAGCAGAAAA
AAAGGCACCCGGAATATAGACACACACCCTGCCAAATCGGCAAAGCCTCC
GCTTTGAAAGAAGCATACACCTGCGACCCTTGCTTCTATTTGACAGGTTG
ATAACGACTACCTGGCGAAGCTACAAGACTGCTTCGGAGTAGTGCGGTCC
GTCAACAAGTCAGACATCCTCACACTTGCATCCAACTTCGGATCCCTAAA
AGCGGTGTGCGACGCTTCTGCCGGCGAATTGGCTCTCTGTCCTGGCCTTG
GGGACAAGAAAGTCGCAAGAATACATGAGGCTTTGCATGAACCGTTGTCG
CATGCTCATAGGGTCAAGCGTAGTCTGCCAGAGGGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2162:17891..20079-

>mRNA_H-paniculata_contig2162.5707.1 ID=mRNA_H-paniculata_contig2162.5707.1|Name=mRNA_H-paniculata_contig2162.5707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig2162:17891..20079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATTCAAATTGCAGGTTCACAAACGCCAGGAAAAAAATCCGATTCT
CAGGCATATAAGAAATGTGCCATATGAGATCACGCCCGGGCTCTTGGCTG
ACTTCGTCCTCGGCCCGAAGGCTTGCACAGTCTTCATCAGCCTGAGATAC
CATCTTTTGTACCCTCACTACCTCATCCAGAGAATAAAGATGGGATTCAA
ATTGCAGGTTCACAAACGCCAGGAAAAAAATCCGATTCTCAGGCATATAA
GAAATGTGCCATATGAGATCACGCCCGGGCTCTTGGCTGACTTCGTCCTC
GGCCCGAAGGCTTGCACAGTCTTCATCAGCCTGAGATACCATCTTTTGTA
CCCTCACTACCTCATCCAGAGAATAAAGGAGCTTTCGAGGCACTTCACCC
TACGTGTGCTGCTTTGCCATGTAGACGTCGATGACTGCGAGAAATGTTTA
CTCGATATCAACAGGATGGCAGTGCTGAACGATTTCACGTTCGTATTGGC
ATGGAGTCTTCAGGAGCTTTCGAGGCACTTCACCCTACGTGTGCTGCTTT
GCCATGTAGACGTCGATGACTGCGAGAAATGTTTACTCGATATCAACAGG
ATGGCAGTGCTGAACGATTTCACGTTCGTATTGGCATGGAGTCTTCAGGA
GGCTGCAAGGTATCTAGAGACGTACAAGTCTTATGAGCAGAAATCTGCAG
AGAGTATTCAAGAGAAGGAGGCTGCAAGGTATCTAGAGACGTACAAGTCT
TATGAGCAGAAATCTGCAGAGAGTATTCAAGAGAAGGTTGATAACGACTA
CCTGGCGAAGCTACAAGACTGCTTCGGAGTAGTGCGGTCCGTCAACAAGT
CAGACATCCTCACACTTGCATCCAACTTCGGATCCCTAAAAGCGGTGTGC
GACGCTTCTGCCGGCGAATTGGCTCTCTGTCCTGGCCTTGGGGACAAGAA
AGTCGCAAGAATACATGAGGCTTTGCATGAACCGTTGTCGCATGCTCATA
GGGTCAAGCGTAGTCTGCCAGAGGGCTAAGTTGATAACGACTACCTGGCG
AAGCTACAAGACTGCTTCGGAGTAGTGCGGTCCGTCAACAAGTCAGACAT
CCTCACACTTGCATCCAACTTCGGATCCCTAAAAGCGGTGTGCGACGCTT
CTGCCGGCGAATTGGCTCTCTGTCCTGGCCTTGGGGACAAGAAAGTCGCA
AGAATACATGAGGCTTTGCATGAACCGTTGTCGCATGCTCATAGGGTCAA
GCGTAGTCTGCCAGAGGGCTAA
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