mRNA_H-paniculata_contig2162.5706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2162.5706.1
Unique NamemRNA_H-paniculata_contig2162.5706.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: D7G4Q1_ECTSI (DNA repair protein RAD51 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Q1_ECTSI)

HSP 1 Score: 635 bits (1639), Expect = 6.190e-223
Identity = 322/343 (93.88%), Postives = 336/343 (97.96%), Query Frame = 3 
Query:  213 MSAQQEVEQAGEIQTG-ETTEEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            MSAQ+E++Q+GE+    E  EEVVA+FHHITELEAHGINRNDVQRLSEAGYCTVESI+HCTIRKLVEVKGIS+QKAAKLKETVYKLVPIGFTTA+QHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCV+CQ+PLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNG+DVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLV+DSATAL+RTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESE QFSIGPVGVEDPKD
Sbjct:    1 MSAQEEMQQSGEVXXXXEAAEEVVASFHHITELEAHGINRNDVQRLSEAGYCTVESISHCTIRKLVEVKGISEQKAAKLKETVYKLVPIGFTTASQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVACQMPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGDDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVIDSATALYRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESECQFSIGPVGVEDPKD 343
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A836CHV0_9STRA (DNA repair and recombination protein Rad51A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHV0_9STRA)

HSP 1 Score: 538 bits (1386), Expect = 2.410e-184
Identity = 271/340 (79.71%), Postives = 296/340 (87.06%), Query Frame = 3 
Query:  273 EVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTE------------------VFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            EV A FHHIT LE+HG+N+ D+ RL+++G CTVE++AH T+R+L EVKGIS+Q+A KLKE  YKLVPIGFTTA QHL QRQDLITLTTGSKELDKLL GGIETGSLTE                  VFGEFRTGKTQLCHTLCV+CQLPLD GGGEGKAMYIDTE TFRPQRL AIA+R+GLN +DVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDY GRGELSERQMQLAQFLRQLTRMAEEFGVAVV+TNQVVANPDGMSFAKD+TKPIGGNI+AHASTTRLRLRK R +NR+CQVFDSPTL ESEAQFS+   G++DP D
Sbjct:   22 EVSACFHHITTLESHGVNKTDIARLADSGLCTVEAVAHATMRRLTEVKGISEQRAIKLKEIAYKLVPIGFTTANQHLQQRQDLITLTTGSKELDKLLAGGIETGSLTELHRRHLLTHAARTPRAPQVFGEFRTGKTQLCHTLCVTCQLPLDLGGGEGKAMYIDTESTFRPQRLAAIAQRYGLNADDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYSGRGELSERQMQLAQFLRQLTRMAEEFGVAVVITNQVVANPDGMSFAKDATKPIGGNIMAHASTTRLRLRKGRAENRVCQVFDSPTLPESEAQFSLSDSGIQDPTD 361
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A7S1UHL6_9STRA (DNA repair protein RAD51 homolog n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHL6_9STRA)

HSP 1 Score: 532 bits (1370), Expect = 2.150e-181
Identity = 258/323 (79.88%), Postives = 292/323 (90.40%), Query Frame = 3 
Query:  270 EEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            EE    FHHITELE HG+NRND+ +L +AGYCT+ESIA  T+R+L EVKG+SD KA KLK+  YK+ P+GF +ATQHL QR D+I+L+TGS+ELD+LL+GGIETGSLTEVFGEFRTGKTQLCHTLCV+CQLPLD GGGEG+A+YIDTEGTFRP +L+AIAERFGLN +DVL+NVAYARA NSEQQ +LL+M+SAMMAEDRYALLVVDSATALFRTDY GRGELSERQM +AQFLRQLTRMAEEFGVAVV TNQVVANPDGMSFAKD+TKPIGGNIIAHASTTRLR RK RG+NRICQVFDSPTL E++ QFS+GP GVEDPKD
Sbjct:   73 EEEAVPFHHITELENHGVNRNDISKLMDAGYCTIESIAAATMRRLTEVKGVSDNKAQKLKDVAYKICPMGFISATQHLAQRADVISLSTGSRELDQLLQGGIETGSLTEVFGEFRTGKTQLCHTLCVTCQLPLDQGGGEGRALYIDTEGTFRPDKLSAIAERFGLNADDVLDNVAYARAQNSEQQTELLRMSSAMMAEDRYALLVVDSATALFRTDYTGRGELSERQMAMAQFLRQLTRMAEEFGVAVVYTNQVVANPDGMSFAKDATKPIGGNIIAHASTTRLRFRKGRGENRICQVFDSPTLPEADCQFSVGPAGVEDPKD 395
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: W7TKJ9_9STRA (DNA repair protein RAD51 homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKJ9_9STRA)

HSP 1 Score: 526 bits (1356), Expect = 1.360e-179
Identity = 261/322 (81.06%), Postives = 288/322 (89.44%), Query Frame = 3 
Query:  273 EVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            EVV  F HITELE HG+NR D+ +L EAGYCTVESI H T+RKL ++KGISDQKA K+KE  YKLVP+GF TA Q L  R+DLI L+TGSK+LD LL GG+ETGSLTE+FGEFRTGKTQLCHTLCV+ QLP+D GGGEGKAMYIDTEGTFRPQRL AIAERFGL+ + VL+NVA+ARAHNSEQQMDLLKMASAMM+EDRYAL+VVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRM+EEFGVAVVLTNQVVANPDGMSFAKD TKPIGGNIIAHAS TRLRLRK RG+NRICQ++DSPTL E+E QFSIG  G+ED KD
Sbjct:   54 EVVVNFRHITELEHHGVNRTDLTKLMEAGYCTVESITHATLRKLTDIKGISDQKAQKIKEIAYKLVPMGFLTAAQQLETRKDLIQLSTGSKDLDALLGGGVETGSLTEIFGEFRTGKTQLCHTLCVTSQLPMDQGGGEGKAMYIDTEGTFRPQRLVAIAERFGLDVDTVLDNVAFARAHNSEQQMDLLKMASAMMSEDRYALVVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMSEEFGVAVVLTNQVVANPDGMSFAKDQTKPIGGNIIAHASHTRLRLRKGRGENRICQIYDSPTLPEAETQFSIGASGIEDAKD 375
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A6S8RTG3_9STRA (DNA repair protein RAD51 homolog n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RTG3_9STRA)

HSP 1 Score: 492 bits (1267), Expect = 1.300e-166
Identity = 240/323 (74.30%), Postives = 284/323 (87.93%), Query Frame = 3 
Query:  270 EEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            EE  +A+ H++ELE HGINR D ++L+ AG+CTV+SIA+ T++ L +VKG+SD KA KL+E  YK+VP  FTTA   L QRQ+++ L+TGSKELDKLLEGGIETGSLTE++GEFRTGKTQLCHTLCV+ QLPLD GGGEGKAMYIDTEGTFRPQRL AIAER+G+  E VLENV YARAHNSEQQ +LLK A ++M+EDR++LLVVDSATAL+RTDY GRGELSERQMQLAQFLR LTRM+ EFG+AVVLTNQVVANPDGMSFAKD+TKPIGGNIIAHAS TRL+L+KARG+NR+C+V DSP++AESEA FS+GP GVED K+
Sbjct:   24 EEAYSAYCHVSELEQHGINRKDTEKLASAGFCTVQSIAYATLKSLCQVKGVSDAKAQKLREIAYKIVPSTFTTAAAELEQRQNMVQLSTGSKELDKLLEGGIETGSLTELYGEFRTGKTQLCHTLCVTAQLPLDQGGGEGKAMYIDTEGTFRPQRLVAIAERYGVAAEMVLENVVYARAHNSEQQKELLKQACSLMSEDRFSLLVVDSATALYRTDYMGRGELSERQMQLAQFLRALTRMSAEFGIAVVLTNQVVANPDGMSFAKDATKPIGGNIIAHASHTRLQLKKARGENRVCKVIDSPSIAESEASFSVGPAGVEDAKE 346
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A7S2FUQ7_9STRA (DNA repair protein RAD51 homolog n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FUQ7_9STRA)

HSP 1 Score: 478 bits (1229), Expect = 8.970e-161
Identity = 232/323 (71.83%), Postives = 279/323 (86.38%), Query Frame = 3 
Query:  270 EEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            EE + ++ HI+ELEAHGI  +D  +L EAG+CTVESIAH ++RKL EVKGIS+ KA KL++   KLVP GF TA Q L +R+++I ++TGS  LD+LL+GGIETGSLTE+FGEFRTGKTQLCHTLCV+CQLPLD GGGEGKAMYIDTEG FRP RL AIAER+G++ E VL+NV +ARAHNSEQQM+LLK A+A+M+EDR+ LL+VDSATALFRTDY GRGELSERQ QL QFLRQL R+A EFG+AVVL+NQVVANPDGMSFAKD++KPIGGNIIAHAS TRL+LRK+RG+NRICQV+DSP++ ESE  F++G  G+ED KD
Sbjct:   30 EEGIQSYRHISELEAHGIAHSDTTKLGEAGFCTVESIAHASLRKLQEVKGISEGKAQKLRDIAMKLVPCGFQTAAQELQRREEIIMISTGSSALDELLQGGIETGSLTEIFGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGCFRPNRLVAIAERYGVSPEGVLDNVVFARAHNSEQQMELLKQAAALMSEDRFVLLIVDSATALFRTDYVGRGELSERQAQLGQFLRQLQRLASEFGLAVVLSNQVVANPDGMSFAKDASKPIGGNIIAHASHTRLKLRKSRGENRICQVYDSPSIPESECTFALGNTGIEDAKD 352
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A7S3XMC0_HETAK (DNA repair protein RAD51 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC0_HETAK)

HSP 1 Score: 476 bits (1226), Expect = 1.840e-160
Identity = 238/330 (72.12%), Postives = 281/330 (85.15%), Query Frame = 3 
Query:  261 ETTEEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPI--GFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLD--AGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            E  EE  A FHHI+EL  HG+N+ D  +L EAGY TV+++AH T RKL EVKGIS+QKAAK+K+  YKLVP+   F TA Q L  R D++ L+TGS ELD +L GGIETGS+TE+FGEFRTGKTQLCHTLCV+CQLP+    GG EGKAMYIDTEG+FRP+ +  +AERFGLN ++VL+N+A ARAHNSEQQM+LLK ASAMMAEDR+ALL+VDSATALFRTDYCGRGELSERQMQLAQFLRQL RMA+EFG+A+V+TNQVVA+P GMSFAKDSTKPIGGNIIAHASTTRLRLRKARG+NRIC ++DSP+L E+E QFSIG  G+++ KD
Sbjct:   15 EQEEEPEAFFHHISELLNHGVNQADCSKLQEAGYNTVQAVAHATSRKLCEVKGISEQKAAKIKDIAYKLVPMMTNFMTAKQALEGRADIMKLSTGSSELDMMLAGGIETGSMTEIFGEFRTGKTQLCHTLCVTCQLPVAEIGGGAEGKAMYIDTEGSFRPENIVKVAERFGLNADEVLDNIACARAHNSEQQMELLKHASAMMAEDRFALLIVDSATALFRTDYCGRGELSERQMQLAQFLRQLQRMADEFGIAIVITNQVVADPGGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGENRICSIYDSPSLPETECQFSIGEKGIDNAKD 344
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: B7G0B3_PHATC (DNA repair protein RAD51 homolog n=5 Tax=Bacillariophyta TaxID=2836 RepID=B7G0B3_PHATC)

HSP 1 Score: 470 bits (1209), Expect = 8.320e-158
Identity = 242/338 (71.60%), Postives = 278/338 (82.25%), Query Frame = 3 
Query:  225 QEVEQAGEIQTGETTEEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            QE +Q G     E   EV  ++  +  L+ HGI  ND+Q+L+ AGY TVESIAH TIRKL +VKGIS+ K  KLKE    +VP+ F TA   L  R+ L+TLTTGS ELDKLLEGG+ETGS+TEVFGEFRTGKTQLCHTLCV+CQ+ +  GG EGKA+YIDTEGTFRP RL AIAERFGL+    LENVAYARAHNSE Q +LLK+A+A+M++DRYALLVVDSATALFRTDY GRGELSERQMQ+AQFLRQLTR+AEEFGVAV +TNQVVANPDGMSFAKDSTKPIGGNI+AHASTTRLRLRK RGDNRIC VFDSPTL E++AQF++G  GV D +D
Sbjct:   16 QEFQQEG---GAEEEVEVAVSYQTLDVLQEHGIAANDIQKLNAAGYHTVESIAHATIRKLSDVKGISEAKVLKLKEITKSMVPMDFKTAADALEDRKALVTLTTGSIELDKLLEGGVETGSITEVFGEFRTGKTQLCHTLCVTCQMAVTEGGAEGKAIYIDTEGTFRPNRLQAIAERFGLDPTVALENVAYARAHNSEHQAELLKLAAAIMSQDRYALLVVDSATALFRTDYTGRGELSERQMQMAQFLRQLTRLAEEFGVAVFITNQVVANPDGMSFAKDSTKPIGGNIMAHASTTRLRLRKGRGDNRICTVFDSPTLPEADAQFAVGAQGVCDAQD 350
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A7S2EBM1_TRICV (DNA repair protein RAD51 homolog n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBM1_TRICV)

HSP 1 Score: 468 bits (1205), Expect = 2.990e-157
Identity = 243/341 (71.26%), Postives = 280/341 (82.11%), Query Frame = 3 
Query:  213 MSAQQEVEQA--GEIQTGETTEEVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVED 1229
            M  QQ  E+A   E   GE   E+  A+  +  L+ HGI  ND+Q+L++AGY TVESIAH T RKL EVKGIS+ K  KLK+ V  +VP+ F TA   L  R+ L+TLTTGS ELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTL V+CQ+ +  GG EGKA+YIDTEGTFRP+RL AIAERFGL+    LENVAYARAHNSE QM+LLKMA+A+M++DRYAL+VVDSATAL+RTDY GRGELSERQM +AQFLR+LT +AEEFGVAV LTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRK RG+NRIC VFDSPTL E++AQF++GP G+ D
Sbjct:    4 MEQQQYAEEAYGQEGAEGEEEMEISVAYQTLDVLQEHGIAANDIQKLNDAGYHTVESIAHATARKLSEVKGISEAKVTKLKDIVKAMVPMDFKTAADALEDRKSLVTLTTGSVELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLAVTCQMSVTEGGAEGKAIYIDTEGTFRPERLQAIAERFGLDPAVALENVAYARAHNSEHQMELLKMAAAIMSQDRYALIVVDSATALYRTDYTGRGELSERQMHMAQFLRRLTCLAEEFGVAVFLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKGRGENRICTVFDSPTLPEADAQFAVGPKGICD 344
[Close]
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Match: A0A1Z5KQ22_FISSO (DNA repair protein RAD51 homolog n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ22_FISSO)

HSP 1 Score: 465 bits (1196), Expect = 5.890e-156
Identity = 234/322 (72.67%), Postives = 267/322 (82.92%), Query Frame = 3 
Query:  273 EVVAAFHHITELEAHGINRNDVQRLSEAGYCTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQRQDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQLPLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD 1238
            E+  A+  +  L+ HGI   D+ +L  AGY TVESIAH T+RKL EVKGIS+ K  KLKE    +VP+ F TA   L  R+ L+TLTTGS ELDKLLEGGIETGS+TEVFGEFRTGKTQLCHTLC++CQ+ +  GG EGKA+YIDTEGTFRP RL AIAERFGL+    LENVAYARAHNSE QM+LLKMA+A+MA+DRYALLVVDSATAL+RTDY GRGELSERQMQ+AQFLRQLTR+AEEFGVAV +TNQVVA+PD MSFAKDSTKPIGGNI+AHASTTRLRLRK RGDNRIC VFDSPTL E++ QF++G  GV D  D
Sbjct:   22 EIAVAYQTLEALQEHGIAAGDIAKLQAAGYHTVESIAHATVRKLTEVKGISEAKVMKLKELTKSMVPMDFKTAADALEDRKSLVTLTTGSVELDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCITCQMAITDGGAEGKAIYIDTEGTFRPARLQAIAERFGLDPAVALENVAYARAHNSEHQMELLKMAAAIMAQDRYALLVVDSATALYRTDYTGRGELSERQMQMAQFLRQLTRLAEEFGVAVFITNQVVASPDAMSFAKDSTKPIGGNIMAHASTTRLRLRKGRGDNRICTVFDSPTLPEADCQFAVGAQGVCDATD 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2162.5706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Q1_ECTSI6.190e-22393.88DNA repair protein RAD51 homolog n=2 Tax=Ectocarpu... [more]
A0A836CHV0_9STRA2.410e-18479.71DNA repair and recombination protein Rad51A n=1 Ta... [more]
A0A7S1UHL6_9STRA2.150e-18179.88DNA repair protein RAD51 homolog n=1 Tax=Phaeomona... [more]
W7TKJ9_9STRA1.360e-17981.06DNA repair protein RAD51 homolog n=2 Tax=Monodopsi... [more]
A0A6S8RTG3_9STRA1.300e-16674.30DNA repair protein RAD51 homolog n=1 Tax=Pelagomon... [more]
A0A7S2FUQ7_9STRA8.970e-16171.83DNA repair protein RAD51 homolog n=1 Tax=Dictyocha... [more]
A0A7S3XMC0_HETAK1.840e-16072.12DNA repair protein RAD51 homolog n=1 Tax=Heterosig... [more]
B7G0B3_PHATC8.320e-15871.60DNA repair protein RAD51 homolog n=5 Tax=Bacillari... [more]
A0A7S2EBM1_TRICV2.990e-15771.26DNA repair protein RAD51 homolog n=1 Tax=Trieres c... [more]
A0A1Z5KQ22_FISSO5.890e-15672.67DNA repair protein RAD51 homolog n=2 Tax=Fistulife... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2162contigH-paniculata_contig2162:14170..18710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score637.1
Seed ortholog evalue4.7e-180
Seed eggNOG ortholog2880.D7G4Q1
Preferred nameRAD51
KEGG koko:K04482,ko:K14303
KEGG TC1.I.1
KEGG Pathwayko03013,ko03440,ko03460,ko05200,ko05212,map03013,map03440,map03460,map05200,map05212
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000400,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000775,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0001709,GO:0001932,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006312,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006403,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007389,GO:0007530,GO:0007531,GO:0007533,GO:0008022,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008298,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009798,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009949,GO:0009950,GO:0009951,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010032,GO:0010033,GO:0010035,GO:0010212,GO:0010243,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010629,GO:0010833,GO:0010941,GO:0010948,GO:0012501,GO:0014070,GO:0014074,GO:0016043,GO:0016458,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017151,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030261,GO:0030491,GO:0030554,GO:0030702,GO:0030706,GO:0030716,GO:0030717,GO:0031000,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033170,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035556,GO:0035639,GO:0035690,GO:0035825,GO:0035861,GO:0036094,GO:0036270,GO:0036297,GO:0040029,GO:0042148,GO:0042221,GO:0042325,GO:0042493,GO:0042592,GO:0042623,GO:0042771,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043073,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0044877,GO:0045003,GO:0045005,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051105,GO:0051106,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060548,GO:0061806,GO:0061982,GO:0061988,GO:0065001,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0070192,GO:0070316,GO:0070317,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071310,GO:0071312,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0072331,GO:0072332,GO:0072710,GO:0072711,GO:0072757,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097306,GO:0097327,GO:0097329,GO:0097367,GO:0098687,GO:0099086,GO:0104004,GO:0110026,GO:0110027,GO:0140013,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901563,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902298,GO:1902679,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1905334,GO:1990414,GO:1990426,GO:1990505,GO:1990918,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2001020,GO:2001141
EggNOG free text desc.recombinase activity
EggNOG OGsCOG0468@1,KOG1433@2759
Ec32 ortholog descriptionDNA repair and recombination protein Rad51A
Ec32 orthologEc-20_000810.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03400,ko04121,ko04131
Exons7
Model size2238
Cds size1029
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929585.844061-UTR-H-paniculata_contig2162:14169..143811622929585.844061-UTR-H-paniculata_contig2162:14169..14381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2162 14170..14381 +
1691480924.6622493-UTR-H-paniculata_contig2162:14169..143811691480924.6622493-UTR-H-paniculata_contig2162:14169..14381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2162 14170..14381 +
1622929585.9914668-UTR-H-paniculata_contig2162:17713..187101622929585.9914668-UTR-H-paniculata_contig2162:17713..18710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2162 17714..18710 +
1691480924.7518153-UTR-H-paniculata_contig2162:17713..187101691480924.7518153-UTR-H-paniculata_contig2162:17713..18710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2162 17714..18710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929585.867952-CDS-H-paniculata_contig2162:14381..144441622929585.867952-CDS-H-paniculata_contig2162:14381..14444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 14382..14444 +
1691480924.6761298-CDS-H-paniculata_contig2162:14381..144441691480924.6761298-CDS-H-paniculata_contig2162:14381..14444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 14382..14444 +
1622929585.8830633-CDS-H-paniculata_contig2162:14622..147241622929585.8830633-CDS-H-paniculata_contig2162:14622..14724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 14623..14724 +
1691480924.6866345-CDS-H-paniculata_contig2162:14622..147241691480924.6866345-CDS-H-paniculata_contig2162:14622..14724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 14623..14724 +
1622929585.899211-CDS-H-paniculata_contig2162:15927..163181622929585.899211-CDS-H-paniculata_contig2162:15927..16318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 15928..16318 +
1691480924.703258-CDS-H-paniculata_contig2162:15927..163181691480924.703258-CDS-H-paniculata_contig2162:15927..16318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 15928..16318 +
1622929585.921786-CDS-H-paniculata_contig2162:16663..167631622929585.921786-CDS-H-paniculata_contig2162:16663..16763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 16664..16763 +
1691480924.7149036-CDS-H-paniculata_contig2162:16663..167631691480924.7149036-CDS-H-paniculata_contig2162:16663..16763Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 16664..16763 +
1622929585.9423943-CDS-H-paniculata_contig2162:16900..169961622929585.9423943-CDS-H-paniculata_contig2162:16900..16996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 16901..16996 +
1691480924.72618-CDS-H-paniculata_contig2162:16900..169961691480924.72618-CDS-H-paniculata_contig2162:16900..16996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 16901..16996 +
1622929585.962089-CDS-H-paniculata_contig2162:17264..174171622929585.962089-CDS-H-paniculata_contig2162:17264..17417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 17265..17417 +
1691480924.7341425-CDS-H-paniculata_contig2162:17264..174171691480924.7341425-CDS-H-paniculata_contig2162:17264..17417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 17265..17417 +
1622929585.9753492-CDS-H-paniculata_contig2162:17589..177131622929585.9753492-CDS-H-paniculata_contig2162:17589..17713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 17590..17713 +
1691480924.7438474-CDS-H-paniculata_contig2162:17589..177131691480924.7438474-CDS-H-paniculata_contig2162:17589..17713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2162 17590..17713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2162.5706.1prot_H-paniculata_contig2162.5706.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2162 14382..17713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2162.5706.1

>prot_H-paniculata_contig2162.5706.1 ID=prot_H-paniculata_contig2162.5706.1|Name=mRNA_H-paniculata_contig2162.5706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MSAQQEVEQAGEIQTGETTEEVVAAFHHITELEAHGINRNDVQRLSEAGY
CTVESIAHCTIRKLVEVKGISDQKAAKLKETVYKLVPIGFTTATQHLLQR
QDLITLTTGSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVSCQL
PLDAGGGEGKAMYIDTEGTFRPQRLTAIAERFGLNGEDVLENVAYARAHN
SEQQMDLLKMASAMMAEDRYALLVVDSATALFRTDYCGRGELSERQMQLA
QFLRQLTRMAEEFGVAVVLTNQVVANPDGMSFAKDSTKPIGGNIIAHAST
TRLRLRKARGDNRICQVFDSPTLAESEAQFSIGPVGVEDPKD*
back to top

mRNA from alignment at H-paniculata_contig2162:14170..18710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2162.5706.1 ID=mRNA_H-paniculata_contig2162.5706.1|Name=mRNA_H-paniculata_contig2162.5706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4541bp|location=Sequence derived from alignment at H-paniculata_contig2162:14170..18710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGTTCAAACCCACGGTCATATCAAATTTGATGTTGTTCGCGCCACCTT
CATATCCGGCTACTCTACCGCACACATACACACCACGCCAGTACCGTATG
GCCTGTACTGCTTACACTACAGTATAGTACAGCGCAGTGCGAAGTCTACA
GAAGGGTCTTCATTGACCACCAATCTTCGTGGAATCTGTGTAGATCACTG
CGTTAGCTCAACATGTCAGCGCAGCAGGAGGTGGAACAGGCCGGAGAAAT
TCAAACGGGCGAAACAACTGAAGAGGCAAGCGCTGACTGTAATAGTTGAA
GCCCATGGAACGTCCTGTAGGGTGAGAGTTTCCTCAGGTTCTTACGACAT
ATATTGCTGGATGTGGGGCGCTCAGCATTGTAGTGTAGTTTCTCACAGAG
GAAAATACACGACTCAATCAACATAGTACCGACTGCTGACTTTTTCTGTT
CAGGTTGTGGCTGCCTTTCACCATATCACCGAGCTGGAGGCACATGGTAT
CAATCGTAATGACGTTCAGCGTTTATCGGAAGCTGGGTACTGTACGGTGG
AGTCGGTGAGCGATGACCGTACTGCTTTGGAGATCGACTTTGTTGAATCA
TGTAGTACAGACCATGAGCTTGGCAGTATTCATTTCCATTTCTAGGGGTG
GGGATGGTTGTGCTGTTTTTCTGTTTGTTTCAGTATTTATTCACCTCCAG
CCTGTGGGAGTTTTACTCTGTCACACCTCCACATTTTAGGTACTCTTTGG
TGCAGATAGCCCTTAACCTTACCGATTGTATCCAGCCTTCATGCTCGTAT
TTTTTTATCCAGCCTAGTGTAAAGGTACGTCAGTTGCGCCTGACATTTTG
AAATACATACTTCCATATACCATCGGAAACTGTTCCGAGAAGAATACCAT
CATCATCGTAATTCATTAAGCTATTGTAATAATGTGTAACTCTGCTACCG
CTGGACCCAAATTAATCCCTATCCAATCCCCAGTGGAGAGTGGCGCTTAT
AATATTATTGTGGGGACAGGGAGCCGCTGCTGTCCCGGCAGACAATTCAA
TATAGACGGTAGGTACATACAGCCTAAGACAGGAAGTTTGCATGGTTTTG
CGCACGACGGTTGCAGCGCTCGACATTTTGTCAGATGCTAGTTTTGTTCT
GAAATTGCTTCCGGGGGTAATAGGTTTAAGGAGCTGAAATTACACCATTT
GCGATTTCTCGTTTAAGCCAGTGACTTTTAGTGACTCTGTGTGTCTTTTT
GGTATTTTATATTTTGCCCAAACTTCACACACCCAGACGACCGTCGTTGT
GCCCATACTATCAGTGTTGATGGCAGTCGTTTAATGTGTGAACAAGAGAT
GATACTATTTTCAGCCTGCAGCAACAAGCGGATGGATTGACAGGGTCTGA
AACATGCGAGGTTTTGGGCAACAAGACTATGACATTTGTTGGATGTGGAA
GCAGCGGAAAAGGTTTTTACCTCAGCCTTCCGGGGGTTAAAAAAAACAAA
ACAAAAAAAAAACATGACATTTGTTTCGCGTGGGGACAGCATAAATTTCA
CATGTAGGAAAACGTTTTCGAAATCACAACAACAGGAATTTTTTTTGAGG
TAATGTCATCCCTCGTTTCCTCTTCTATTACTAAGACTGTTCTTGTGTTG
CTGCAACATCATCAAGTTGTGGTACAAGTACGGCGTCCGTGCATGTTCAT
CAGGAGAGCTCATTCACACTCCGTCCATTGGCGCATGATTCGCGCGCTCG
AACTTTAGATAGCTCATTGCACCATACGCAAGCTTGTAGAGGTGAAAGGG
ATAAGCGATCAGAAGGCGGCGAAGCTCAAGGAGACGGTTTACAAGCTCGT
CCCCATAGGATTTACCACCGCGACCCAGCACCTACTTCAGCGCCAGGATC
TCATTACTCTCACGACCGGCAGCAAGGAGCTAGACAAGCTGCTAGAGGGC
GGCATTGAGACCGGGTCGCTCACGGAGGTTTTCGGGGAATTTCGCACTGG
CAAGACCCAGTTGTGCCACACGCTTTGTGTATCATGCCAACTGCCTCTTG
ATGCTGGAGGCGGGGAGGGCAAGGCAATGTACATCGACACCGAGGGAACG
TTTCGGCCGCAGCGGCTTACCGCTATTGCTGAGCGGTTTGGACTGAACGG
TAAGGTGTTGAACATTCTCCTTCTACAGTTGATGCATACCAATTGCTAGC
GTGAGGTAACATGCACTTACCAACTGTGTCTACTGGGATGATGCGCGCAT
AGTCTATATTCGATGTGTTCGCATCATTGTGGGGAGGGTGACTGAAAGAG
TTACGGAGGGCGTTTCGCATATGATTTCAACGACAGCCTTTATTTTCCGC
CACCTCTCACAATTGTAGTCGCACGCGGATGATGAGCTTCCACATCATAA
AACCGGGTCAACGTTTGCCGCAGTGTACTCAAGGCCGACGGGAAATCGAG
GGGACACTGACAATACATGTGTCATCATGCCACCCCATTCGCAGGGGAAG
ATGTTTTGGAGAATGTTGCATACGCCAGGGCGCATAACTCTGAGCAGCAG
ATGGATCTGCTGAAGATGGCGTCAGCGATGATGGCGGAGGATAGGTGCGT
TTCGATTTCGATACACCACATGGTCGACAAGATCTATTAAGCTTGTGTTC
GATTTTCTCGAACGAAAACCTCACATTTGCCTTTTCATACGACTCCTCGC
CAAATTGTTTGACTGCATCCCTGGTCTTTAGGTATGCATTGCTCGTCGTT
GACAGCGCGACAGCCTTGTTCCGCACGGATTATTGTGGGCGAGGGGAACT
GTCAGAAAGACAGATGCAACTGGCCCAGTGAGTGTACATCGTGTTTCATT
ATGTTGTATGCTTGGAATAGAGACAATGTGCGCAATTGTTGAGCCACCTC
GGGCCTCAATGCCAACCAAGATATGGTGTCTTCGATGATGTCCGTAGTTA
AACCGCACATGTTAACAAAATCTTATTTTTTCATACCTCTTGTAGAAGGT
GGATCGCTCCACTCGTTTGAATTCATTCTCTGCCGCGGGCACGTAGCATA
CGCGAGTCTGAAGAACCTATGCTAATCCTATGGAGCTTGCGGCAGGTTTT
TGCGACAGCTTACACGCATGGCGGAAGAGTTTGGAGTTGCTGTCGTGCTG
ACCAATCAAGTGGTCGCAAACCCGGACGGCATGAGTTTCGCCAAGGATAG
CACGAAGCCAATTGGGGGCAACATCATTGCTCATGCATCCACCACGCGGT
AAGGCCAAGACTGTGGGCGGGTATATTTGGTGTCGATCTTGGATCTTTTT
CTTCCGTGGACAACTTGAGTTGTCCAAGTCAATTAACATTCGTCAAGGTA
ATTGTAGGTCCCTGTCAACACGTCTCAACATTATGCACATTGAAAATGTT
CGCTCTGACTACCACAACAGACTGCGTCTACGGAAGGCTCGAGGCGACAA
CCGAATATGTCAGGTGTTCGACTCTCCAACTCTAGCGGAGAGCGAAGCCC
AGTTTTCCATCGGCCCCGTCGGAGTGGAGGATCCCAAAGACTAGCCCGTG
CGTGGTTTGAATGCTATCAAATTGCGCCTTGTCAGCTTTGGCCCCAGATT
TATCTTGCAAAATCTGTGCGACGCAGCAATGCAGTCTCGCGTGGAGCATA
ATTGATCAAAAACGTGTATAAACTACTCGTTCTGCAATTCCGTCATCAGC
AAGCATGATGGGTCTCGAGGTTTAGCCCTCTGGCAGACTACGCTTGACCC
TATGAGCATGCGACAACGGTTCATGCAAAGCCTCATGTATTCTTGCGACT
TTCTTGTCCCCAAGGCCAGGACAGAGAGCCAATTCGCCGGCAGAAGCGTC
GCACACCGCTTTTAGGGATCCGAAGTTGGATGCAAGTGTGAGGATGTCTG
ACTTGTTGACGGACCGCACTACTCCGAAGCAGTCTTGTAGCTTCGCCAGG
TAGTCGTTATCAACCTGTCAAATAGAAGCAAGGGTCGCAGGTGTATGCTT
CTTTCAAAGCGGAGGCTTTGCCGATTTGGCAGGGTGTGTGTCTATATTCC
GGGTGCCTTTTTTTCTGCTATATATTTTCGCAATCACTTGGTTGAAAATA
GCCCTGGAGATTCCATGATTGTGGCATTATGTTTCAAATTTGTGTTTTGT
TCTCTCAGTGAGACTACACAGATTTTGTTGTCTATTTGGGAGTTCAAGTG
GAATCTAGTTTGTCGTTCACTTACCTCTTCCGGTTTGTTGAGGTTGTACA
TAGGCCCGTGGGTCTTCAGTAAATCAAATGTAGACGAATTAAGCGAGAAC
AGTTTTTTTTCATGAGTCCTATGTACTGTTGTATGATGAAGGCAGGTGAC
AACCTCGAGCAATGGGTATTACTATGACACAAGTGTGGGGGATCAAAGCA
ACATTGAGGAATTCGGTCATAACACGAAACACAACACACACGCGAAGTGC
ACCGCTGCTGAAGATTCGTGATATAAGCTTCTATCAAGATTATTTATTTC
CCCCCGGAATGTTGTTGATTGTATTATTCTATGGTGCTGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2162:14170..18710+

>mRNA_H-paniculata_contig2162.5706.1 ID=mRNA_H-paniculata_contig2162.5706.1|Name=mRNA_H-paniculata_contig2162.5706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig2162:14170..18710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGCGCAGCAGGAGGTGGAACAGGCCGGAGAAATTCAAACGGGCGA
AACAACTGAAGAGATGTCAGCGCAGCAGGAGGTGGAACAGGCCGGAGAAA
TTCAAACGGGCGAAACAACTGAAGAGGTTGTGGCTGCCTTTCACCATATC
ACCGAGCTGGAGGCACATGGTATCAATCGTAATGACGTTCAGCGTTTATC
GGAAGCTGGGTACTGTACGGTGGAGTCGGTTGTGGCTGCCTTTCACCATA
TCACCGAGCTGGAGGCACATGGTATCAATCGTAATGACGTTCAGCGTTTA
TCGGAAGCTGGGTACTGTACGGTGGAGTCGATAGCTCATTGCACCATACG
CAAGCTTGTAGAGGTGAAAGGGATAAGCGATCAGAAGGCGGCGAAGCTCA
AGGAGACGGTTTACAAGCTCGTCCCCATAGGATTTACCACCGCGACCCAG
CACCTACTTCAGCGCCAGGATCTCATTACTCTCACGACCGGCAGCAAGGA
GCTAGACAAGCTGCTAGAGGGCGGCATTGAGACCGGGTCGCTCACGGAGG
TTTTCGGGGAATTTCGCACTGGCAAGACCCAGTTGTGCCACACGCTTTGT
GTATCATGCCAACTGCCTCTTGATGCTGGAGGCGGGGAGGGCAAGGCAAT
GTACATCGACACCGAGGGAACGTTTCGGCCGCAGCGGCTTACCGCTATTG
CTGAGCGGTTTGGACTGAACGATAGCTCATTGCACCATACGCAAGCTTGT
AGAGGTGAAAGGGATAAGCGATCAGAAGGCGGCGAAGCTCAAGGAGACGG
TTTACAAGCTCGTCCCCATAGGATTTACCACCGCGACCCAGCACCTACTT
CAGCGCCAGGATCTCATTACTCTCACGACCGGCAGCAAGGAGCTAGACAA
GCTGCTAGAGGGCGGCATTGAGACCGGGTCGCTCACGGAGGTTTTCGGGG
AATTTCGCACTGGCAAGACCCAGTTGTGCCACACGCTTTGTGTATCATGC
CAACTGCCTCTTGATGCTGGAGGCGGGGAGGGCAAGGCAATGTACATCGA
CACCGAGGGAACGTTTCGGCCGCAGCGGCTTACCGCTATTGCTGAGCGGT
TTGGACTGAACGGGGAAGATGTTTTGGAGAATGTTGCATACGCCAGGGCG
CATAACTCTGAGCAGCAGATGGATCTGCTGAAGATGGCGTCAGCGATGAT
GGCGGAGGATAGGGGAAGATGTTTTGGAGAATGTTGCATACGCCAGGGCG
CATAACTCTGAGCAGCAGATGGATCTGCTGAAGATGGCGTCAGCGATGAT
GGCGGAGGATAGGTATGCATTGCTCGTCGTTGACAGCGCGACAGCCTTGT
TCCGCACGGATTATTGTGGGCGAGGGGAACTGTCAGAAAGACAGATGCAA
CTGGCCCAGTATGCATTGCTCGTCGTTGACAGCGCGACAGCCTTGTTCCG
CACGGATTATTGTGGGCGAGGGGAACTGTCAGAAAGACAGATGCAACTGG
CCCAGTTTTTGCGACAGCTTACACGCATGGCGGAAGAGTTTGGAGTTGCT
GTCGTGCTGACCAATCAAGTGGTCGCAAACCCGGACGGCATGAGTTTCGC
CAAGGATAGCACGAAGCCAATTGGGGGCAACATCATTGCTCATGCATCCA
CCACGCGGTTTTTGCGACAGCTTACACGCATGGCGGAAGAGTTTGGAGTT
GCTGTCGTGCTGACCAATCAAGTGGTCGCAAACCCGGACGGCATGAGTTT
CGCCAAGGATAGCACGAAGCCAATTGGGGGCAACATCATTGCTCATGCAT
CCACCACGCGACTGCGTCTACGGAAGGCTCGAGGCGACAACCGAATATGT
CAGGTGTTCGACTCTCCAACTCTAGCGGAGAGCGAAGCCCAGTTTTCCAT
CGGCCCCGTCGGAGTGGAGGATCCCAAAGACTAGACTGCGTCTACGGAAG
GCTCGAGGCGACAACCGAATATGTCAGGTGTTCGACTCTCCAACTCTAGC
GGAGAGCGAAGCCCAGTTTTCCATCGGCCCCGTCGGAGTGGAGGATCCCA
AAGACTAG
back to top