prot_H-paniculata_contig21613.5703.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21613.5703.1
Unique Nameprot_H-paniculata_contig21613.5703.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length119
Homology
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: D7G047_ECTSI (Topo_C_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G047_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-24
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFSYQTLLKSNSPLVD 55
            MDPR+SVAWCKRHEVPVEKVFAKTL++KFVWAMNVPPDW FSY+TL  S   ++D
Sbjct:    1 MDPRMSVAWCKRHEVPVEKVFAKTLQNKFVWAMNVPPDWNFSYETLYNSKQSVLD 55          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A836C9X0_9STRA (DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.000e-19
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFSYQTL 46
            MDPR+SVAWCKR+EVP+E++FAKTLRDKFVWAMNVPPDW F ++TL
Sbjct:  613 MDPRISVAWCKRNEVPIERIFAKTLRDKFVWAMNVPPDWRFDFETL 658          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S0FJQ3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.810e-17
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 42
            MDPR+SVAWCKR+EVP+EK+F+KTLRDKF WAM VPP WEF+
Sbjct:   58 MDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVPPTWEFN 99          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S2C1I1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1I1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.980e-17
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    2 DPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEF 41
            DPR+SVAWCKR EVPVEKVF KTLRDKFVWAM VPPDWEF
Sbjct:  134 DPRISVAWCKRCEVPVEKVFPKTLRDKFVWAMPVPPDWEF 173          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A482T3K1_9ARCH (Topo_C_assoc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3K1_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 5.790e-17
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEF 41
            MDPR+SVAWCKR EVP++KVFA+TLRDKF WAM  PPDW+F
Sbjct:    1 MDPRISVAWCKRCEVPIDKVFARTLRDKFNWAMAAPPDWKF 41          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S1ZX42_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX42_TRICV)

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 42
            MDPR+SVAWCKR+EVP+EK+F+KTLRDKF WAM VPPDWEF+
Sbjct:  584 MDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVPPDWEFN 625          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S4VCD4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VCD4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.540e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 42
            MDPR+SVAWCKR+EVP+EK+F+KTLRDKF WAM VPPDWEF+
Sbjct:  684 MDPRISVAWCKRNEVPIEKIFSKTLRDKFNWAMAVPPDWEFN 725          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S2XP40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XP40_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.720e-16
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 42
            MDPR+SVAWCKR+EVP+EK+F+KT+RDKF WAM VP DWEF+
Sbjct:  142 MDPRISVAWCKRNEVPIEKIFSKTMRDKFNWAMAVPSDWEFN 183          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S4JSB1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JSB1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.770e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 42
            MDPR++VAWCKR+EVP+EKVF+KTLRDKF WAM VPPDWEF+
Sbjct:  751 MDPRITVAWCKRNEVPIEKVFSKTLRDKFNWAMAVPPDWEFN 792          
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Match: A0A7S3PD47_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD47_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.470e-16
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFS 42
            MDPR+SVAWCKR+EVP+EKVF+KTLRDKF WAM VPP+WEF+
Sbjct:  710 MDPRISVAWCKRNEVPIEKVFSKTLRDKFNWAMAVPPEWEFN 751          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21613.5703.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G047_ECTSI1.530e-2478.18Topo_C_assoc domain-containing protein n=1 Tax=Ect... [more]
A0A836C9X0_9STRA2.000e-1980.43DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S0FJQ3_9STRA1.810e-1778.57Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2C1I1_9STRA2.980e-1790.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482T3K1_9ARCH5.790e-1778.05Topo_C_assoc domain-containing protein n=1 Tax=arc... [more]
A0A7S1ZX42_TRICV2.500e-1680.95Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4VCD4_9STRA2.540e-1680.95Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2XP40_9STRA3.720e-1676.19Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4JSB1_9STRA4.770e-1680.95Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3PD47_9STRA6.470e-1680.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025834Topoisomerase I C-terminal domainPFAMPF14370Topo_C_assoccoord: 1..41
e-value: 5.9E-20
score: 71.0
IPR014727DNA topoisomerase I, catalytic core, alpha/beta subdomainGENE3D1.10.132.10coord: 1..41
e-value: 1.0E-17
score: 65.4
NoneNo IPR availablePANTHERPTHR10290DNA TOPOISOMERASE Icoord: 1..41
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21613contigH-paniculata_contig21613:1913..3844 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21613.5703.1mRNA_H-paniculata_contig21613.5703.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21613 1913..3844 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21613.5703.1 ID=prot_H-paniculata_contig21613.5703.1|Name=mRNA_H-paniculata_contig21613.5703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MDPRVSVAWCKRHEVPVEKVFAKTLRDKFVWAMNVPPDWEFSYQTLLKSN
SPLVDPREIRAAKAAAARKAKEATTPVKAKKPAAAATPTPAPAPAPAPAA
KAATPKPDRKGKGKVKKEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025834TopoI_C_dom
IPR014727TopoI_cat_a/b-sub_euk
IPR011010DNA_brk_join_enz