mRNA_H-paniculata_contig2160.5699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2160.5699.1
Unique NamemRNA_H-paniculata_contig2160.5699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2160.5699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2160contigH-paniculata_contig2160:14872..18588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1290
Cds size1287
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2160.5699.1prot_H-paniculata_contig2160.5699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2160 14872..18586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.660309-CDS-H-paniculata_contig2160:14871..149881622929584.660309-CDS-H-paniculata_contig2160:14871..14988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2160 14872..14988 +
1691480924.33867-CDS-H-paniculata_contig2160:14871..149881691480924.33867-CDS-H-paniculata_contig2160:14871..14988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2160 14872..14988 +
1622929584.6748476-CDS-H-paniculata_contig2160:16869..171361622929584.6748476-CDS-H-paniculata_contig2160:16869..17136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2160 16870..17136 +
1691480924.354308-CDS-H-paniculata_contig2160:16869..171361691480924.354308-CDS-H-paniculata_contig2160:16869..17136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2160 16870..17136 +
1622929584.6903274-CDS-H-paniculata_contig2160:17683..185861622929584.6903274-CDS-H-paniculata_contig2160:17683..18586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2160 17684..18586 +
1691480924.3655488-CDS-H-paniculata_contig2160:17683..185861691480924.3655488-CDS-H-paniculata_contig2160:17683..18586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2160 17684..18586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2160.5699.1

>prot_H-paniculata_contig2160.5699.1 ID=prot_H-paniculata_contig2160.5699.1|Name=mRNA_H-paniculata_contig2160.5699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=429bp
EELRNDSVSFCTVPLPAVEAVDGGGGGGDDELVSLTDIGGGQKDGGIMTK
SSTSARRRSSPDPELVPEAVPEALEDGFNDSCFPEGVGKRLPLSLAGGVE
KLSRGGWPLASANEGDEGEGDEVLVHDSWDLRSPLRTPSAGNPMTSRTPI
HAEWSHALVCDERSSAAAVANNVSAPDTLVRTSLADMSSKRGEQLPLSQR
QLQQTVLSTGGAHDLVSEQSLRLQRRCSDGTGGVTGQQPRRCADNVIRSE
FPTSTGAVVSQFQGSGVEESDPTVDVESPDDSLARTTQKQEDNNNNDSNN
NKNDTVTQSLPPSTRAVPDRTEPESAPDISATTTATMTLPEPRCRSSSSN
IDRESAAAGNSELARNPPSWKDFEVRSCEPGSADLGETNVVDGMPSAGSS
AGKCKEAKRGVDSGGLAREEESHLGADEG
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mRNA from alignment at H-paniculata_contig2160:14872..18588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2160.5699.1 ID=mRNA_H-paniculata_contig2160.5699.1|Name=mRNA_H-paniculata_contig2160.5699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3717bp|location=Sequence derived from alignment at H-paniculata_contig2160:14872..18588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTGCGGAATGATTCGGTGTCGTTTTGCACGGTACCGTTGCCTGC
TGTGGAGGCGGTGGACGGTGGTGGAGGTGGAGGAGACGACGAGTTAGTGA
GTCTGACGGATATTGGGGTGAGAAGAAAAACGTCAAATTCGGCGTTCGTT
GTGTTTGCTTGAATTATAGAGTTTTATTTTTGTTGAATACTCGAAAACAG
GATCACATTTGATTCTGTCAGATCCCTGGCTACGCTTTCACTTCTCCCGA
CGCGCGTGGCCTTCGTCGGGACAAGATCTATCTGTTTTCTCTCTGGGCTC
GTTTTCCAACTCTTCCCGATTGATTGCCATACATTCTCCTGCTGCTGGCA
GGTCCCGCGGTCGACAGGCCGGACGCACCCATGTGCGCCCCCACCTTGCC
CAGTCTTGCGTTTGTTTTTACCTGTGTGTACATGCCGAGCCCCGAAACAT
ATGGAGGTGGTGGCCTGCGTTCGTTGAACCCGAAGAGAGGAGTAAAGGGG
GTTACACACATGGCAGTCCGGGGGTAGAGTAGATATTGTAGTCTTATAGC
TGTAACTGGTAGGCGTTCACCTATGACTCGGACCCCGCTAAAATTGTTTC
GTATCTGGTCCTGTAATGGCTCATGGTGAGCTGCAGGTCCCCGGCCCCAG
TCAGCCTGCACCGATGTTCGCTACGAAGCGAAGTCCTGCTCACAAACTTT
CACAATTTGCAAAACTTGCGAGATTGTTTTCGAGTTTAGTACAGTGACTT
ATTTTGAAGCGCGACATTGATGCAGGTGGACTAGGGTCCGGCACTTGGAA
CTTCGTGTGAACTCATTACGAGCCATATAGTACCAAATCGAATTTTGCAA
ACAGAATCTGCTGGTCCAAACACCGTATTATGTATTGGACACTGTGCGTA
GACCAGCGTCATGATGATGATGATGATGATCCTCATCGTTGCCAACGAGA
GTAAAAAAAGGATTTTCCGCTCCGACCATCTCTGACAAAGATGGGGCGGG
TTTTGGAGGTTTCAAGCGACATGATGTTGTCGAATGCTGCGTGATATGTA
TGCAGTGGTAGTAAAGTCGCGGTTACGTCCATATACCTCGTGCCTGTCCT
TTACCCGCGGACTCGCTGCACTCGCAGCGGCTTGCTACTATAAGCTGGTA
TAAAGATTCGTTTTTCGGGAGTTACTTAAATTTAGAGGCGAAAAATATGT
TCTGAAACAACCACGACGCCCACGATGCGTATGAAAAACGTAACATGTAA
GAATTTGTTGTGAGATTAGCATAACTGGGTGTGTCCAGCCTATCAGTCTT
CCTTTACGACAAAGTTCATGCGACTTGCCCTCGAATTCGTTCAGAAATTC
ACTTTTATTCTTATGAAATAAAGTACATAGGCAGTAAAAATTTGTGCGAG
AAGTAATAGTTTGAGCCTCCCCCCCCCCCAGTCGATTCGTCCCGAGCCCC
GTTTTTGTTCGAGTGTTCTTTTTCAAGCTAACCATTTAGTACGCTATTTT
TTTACGTGGATTTCAAATCTGGAAGATTTTGTTGAGAAATTCGAACTTAA
GGGGGTGTGTTTGTGGTTTCCAATTTTGGACGTTTGGTCAATACATGCAC
CTGGTTTGTACGTTTTTCATGAGAATATATACATATATAACATATATATA
TATATATATATATATATGTTGTACTATGCAGACGACACGGGGATTTCTTT
CGTTGGGGTGGGTTCTAATCCGTTTAGCCCACGCTAATGAGGAGTGACCT
CCTGTATTATCGCTTTGGAAAAAAATCGTGAATTTTTACGCCGCTTCAAT
TGAACACTTTGCACTTTCCCTTCCCCTTTCGTTAAGTTTGTGAATTTCTC
CCACCAATTCCCTTGTAAACAGTTTGCACCTTTTTTGCTTCCATCAGTCA
AATTGCAAATCTCACTATCATTTATTCACGCCTTGATATTGTAAACTACT
ACCTCCCATTAATCAAGATGTATATATCACGACCCCCCCTCCCTCCAGGG
CGGTCAGAAGGATGGTGGTATCATGACCAAGAGCTCAACGTCGGCGCGAC
GAAGAAGCAGCCCGGATCCCGAACTTGTGCCCGAGGCAGTGCCCGAGGCA
CTAGAGGACGGGTTCAACGACAGCTGTTTCCCGGAAGGGGTAGGGAAGCG
ACTGCCGCTCTCTCTAGCAGGGGGCGTGGAGAAATTATCTAGGGGAGGTT
GGCCGCTGGCGTCGGCTAATGAGGGCGATGAGGGCGAGGGGGACGAGGTG
CTTGTTCACGATTCGGTGAGAGGGGATGTAGACGAGTTTATGGTTGCTGC
ACTAGGTACCTCCGCGGAATCGGATTATCGCAGTGTGTTCGGCGTTTGAT
TGATATTAAGAACTTTGCTGACGTCGAGTTTGGAAGTTTGATGTTGACAG
TGAATCAACACCTTTGGTATTTATCGCCTTTTTTCCGTCTCGTGTGTCTG
TCCTATCTATCTTGTCTGTCGGATTTCCCGTATAACATCTCTATCGAATA
CCCCCCTCGCCTCCCCCACCCCCTGTTTCTCTCCCTTCCTTTCCTTGCCC
CCCGTTCGGATAAACTGTTTTTGCGTATAATACATAATATTGCAGATCGA
CCGCACGGGTCCCCTCCCTGGCTAAGCCTCGCTATCACCGCCCATGTTTT
CTTCCGAGAAATATAACTACTCACCATACGCTTTTTCCTCCACGCTTCTC
TCGTTGTTCTCCCTCCTTCCTTCCTTCCCTCTCTCCCTCCCTCCCTGCCT
CCCTGCCTGCCTCCCTCCACGCACCCACCCACCCATCCAATCGCTTTTTC
TATTTTTTTCAGTGGGATCTCCGGTCTCCTCTAAGGACCCCATCCGCAGG
AAATCCAATGACATCGCGCACACCGATACATGCCGAATGGTCCCATGCTC
TCGTTTGTGATGAACGTAGCTCTGCGGCTGCCGTCGCTAACAACGTATCT
GCACCTGATACCTTAGTCCGGACCTCCCTCGCCGATATGTCCTCCAAGCG
GGGCGAGCAACTTCCGCTGTCGCAACGGCAGTTGCAACAAACCGTCTTGT
CCACTGGCGGAGCACATGACCTTGTTAGCGAGCAAAGTTTACGCTTGCAA
CGACGTTGTTCAGACGGCACTGGTGGTGTCACCGGGCAACAACCCCGTCG
TTGTGCTGACAACGTGATTCGGAGCGAATTCCCCACTAGTACCGGTGCAG
TCGTGTCGCAATTCCAGGGTTCGGGGGTCGAGGAATCAGACCCGACTGTC
GATGTCGAATCCCCGGATGACTCGTTGGCGAGAACCACGCAGAAGCAAGA
AGACAACAACAACAACGATAGCAACAACAACAAAAACGACACAGTGACCC
AATCACTTCCGCCCTCGACGCGTGCCGTTCCGGATCGGACCGAACCCGAA
AGCGCGCCGGATATTTCTGCGACCACGACTGCGACCATGACTCTTCCGGA
ACCTCGCTGTCGTAGCAGTAGTAGTAACATCGACCGGGAGTCCGCAGCGG
CGGGTAATTCGGAGCTTGCGCGGAATCCTCCTTCTTGGAAAGACTTCGAA
GTTCGTAGCTGTGAGCCGGGATCGGCGGACTTGGGCGAGACTAATGTTGT
TGACGGGATGCCCTCGGCGGGCTCTTCTGCCGGGAAGTGCAAGGAAGCAA
AGAGGGGCGTCGACTCGGGGGGGTTGGCCCGTGAGGAAGAGTCGCACTTA
GGCGCAGATGAAGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2160:14872..18588+

>mRNA_H-paniculata_contig2160.5699.1 ID=mRNA_H-paniculata_contig2160.5699.1|Name=mRNA_H-paniculata_contig2160.5699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at H-paniculata_contig2160:14872..18588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTGCGGAATGATTCGGTGTCGTTTTGCACGGTACCGTTGCCTGC
TGTGGAGGCGGTGGACGGTGGTGGAGGTGGAGGAGACGACGAGTTAGTGA
GTCTGACGGATATTGGGGAGGAGTTGCGGAATGATTCGGTGTCGTTTTGC
ACGGTACCGTTGCCTGCTGTGGAGGCGGTGGACGGTGGTGGAGGTGGAGG
AGACGACGAGTTAGTGAGTCTGACGGATATTGGGGGCGGTCAGAAGGATG
GTGGTATCATGACCAAGAGCTCAACGTCGGCGCGACGAAGAAGCAGCCCG
GATCCCGAACTTGTGCCCGAGGCAGTGCCCGAGGCACTAGAGGACGGGTT
CAACGACAGCTGTTTCCCGGAAGGGGTAGGGAAGCGACTGCCGCTCTCTC
TAGCAGGGGGCGTGGAGAAATTATCTAGGGGAGGTTGGCCGCTGGCGTCG
GCTAATGAGGGCGATGAGGGCGAGGGGGACGAGGTGCTTGTTCACGATTC
GGGCGGTCAGAAGGATGGTGGTATCATGACCAAGAGCTCAACGTCGGCGC
GACGAAGAAGCAGCCCGGATCCCGAACTTGTGCCCGAGGCAGTGCCCGAG
GCACTAGAGGACGGGTTCAACGACAGCTGTTTCCCGGAAGGGGTAGGGAA
GCGACTGCCGCTCTCTCTAGCAGGGGGCGTGGAGAAATTATCTAGGGGAG
GTTGGCCGCTGGCGTCGGCTAATGAGGGCGATGAGGGCGAGGGGGACGAG
GTGCTTGTTCACGATTCGTGGGATCTCCGGTCTCCTCTAAGGACCCCATC
CGCAGGAAATCCAATGACATCGCGCACACCGATACATGCCGAATGGTCCC
ATGCTCTCGTTTGTGATGAACGTAGCTCTGCGGCTGCCGTCGCTAACAAC
GTATCTGCACCTGATACCTTAGTCCGGACCTCCCTCGCCGATATGTCCTC
CAAGCGGGGCGAGCAACTTCCGCTGTCGCAACGGCAGTTGCAACAAACCG
TCTTGTCCACTGGCGGAGCACATGACCTTGTTAGCGAGCAAAGTTTACGC
TTGCAACGACGTTGTTCAGACGGCACTGGTGGTGTCACCGGGCAACAACC
CCGTCGTTGTGCTGACAACGTGATTCGGAGCGAATTCCCCACTAGTACCG
GTGCAGTCGTGTCGCAATTCCAGGGTTCGGGGGTCGAGGAATCAGACCCG
ACTGTCGATGTCGAATCCCCGGATGACTCGTTGGCGAGAACCACGCAGAA
GCAAGAAGACAACAACAACAACGATAGCAACAACAACAAAAACGACACAG
TGACCCAATCACTTCCGCCCTCGACGCGTGCCGTTCCGGATCGGACCGAA
CCCGAAAGCGCGCCGGATATTTCTGCGACCACGACTGCGACCATGACTCT
TCCGGAACCTCGCTGTCGTAGCAGTAGTAGTAACATCGACCGGGAGTCCG
CAGCGGCGGGTAATTCGGAGCTTGCGCGGAATCCTCCTTCTTGGAAAGAC
TTCGAAGTTCGTAGCTGTGAGCCGGGATCGGCGGACTTGGGCGAGACTAA
TGTTGTTGACGGGATGCCCTCGGCGGGCTCTTCTGCCGGGAAGTGCAAGG
AAGCAAAGAGGGGCGTCGACTCGGGGGGGTTGGCCCGTGAGGAAGAGTCG
CACTTAGGCGCAGATGAAGGGTGGGATCTCCGGTCTCCTCTAAGGACCCC
ATCCGCAGGAAATCCAATGACATCGCGCACACCGATACATGCCGAATGGT
CCCATGCTCTCGTTTGTGATGAACGTAGCTCTGCGGCTGCCGTCGCTAAC
AACGTATCTGCACCTGATACCTTAGTCCGGACCTCCCTCGCCGATATGTC
CTCCAAGCGGGGCGAGCAACTTCCGCTGTCGCAACGGCAGTTGCAACAAA
CCGTCTTGTCCACTGGCGGAGCACATGACCTTGTTAGCGAGCAAAGTTTA
CGCTTGCAACGACGTTGTTCAGACGGCACTGGTGGTGTCACCGGGCAACA
ACCCCGTCGTTGTGCTGACAACGTGATTCGGAGCGAATTCCCCACTAGTA
CCGGTGCAGTCGTGTCGCAATTCCAGGGTTCGGGGGTCGAGGAATCAGAC
CCGACTGTCGATGTCGAATCCCCGGATGACTCGTTGGCGAGAACCACGCA
GAAGCAAGAAGACAACAACAACAACGATAGCAACAACAACAAAAACGACA
CAGTGACCCAATCACTTCCGCCCTCGACGCGTGCCGTTCCGGATCGGACC
GAACCCGAAAGCGCGCCGGATATTTCTGCGACCACGACTGCGACCATGAC
TCTTCCGGAACCTCGCTGTCGTAGCAGTAGTAGTAACATCGACCGGGAGT
CCGCAGCGGCGGGTAATTCGGAGCTTGCGCGGAATCCTCCTTCTTGGAAA
GACTTCGAAGTTCGTAGCTGTGAGCCGGGATCGGCGGACTTGGGCGAGAC
TAATGTTGTTGACGGGATGCCCTCGGCGGGCTCTTCTGCCGGGAAGTGCA
AGGAAGCAAAGAGGGGCGTCGACTCGGGGGGGTTGGCCCGTGAGGAAGAG
TCGCACTTAGGCGCAGATGAAGGG
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