mRNA_H-paniculata_contig2159.5696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2159.5696.1
Unique NamemRNA_H-paniculata_contig2159.5696.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2159.5696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2159contigH-paniculata_contig2159:15070..20085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size797
Cds size774
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2159.5696.1prot_H-paniculata_contig2159.5696.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2159 15070..20062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.0701907-CDS-H-paniculata_contig2159:15069..156851622929584.0701907-CDS-H-paniculata_contig2159:15069..15685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2159 15070..15685 -
1691480924.0042343-CDS-H-paniculata_contig2159:15069..156851691480924.0042343-CDS-H-paniculata_contig2159:15069..15685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2159 15070..15685 -
1622929584.1002252-CDS-H-paniculata_contig2159:16279..163891622929584.1002252-CDS-H-paniculata_contig2159:16279..16389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2159 16280..16389 -
1691480924.0176647-CDS-H-paniculata_contig2159:16279..163891691480924.0176647-CDS-H-paniculata_contig2159:16279..16389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2159 16280..16389 -
1622929584.1168373-CDS-H-paniculata_contig2159:20014..200621622929584.1168373-CDS-H-paniculata_contig2159:20014..20062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2159 20015..20062 -
1691480924.035024-CDS-H-paniculata_contig2159:20014..200621691480924.035024-CDS-H-paniculata_contig2159:20014..20062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2159 20015..20062 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.1292884-UTR-H-paniculata_contig2159:20062..200851622929584.1292884-UTR-H-paniculata_contig2159:20062..20085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2159 20063..20085 -
1691480924.046353-UTR-H-paniculata_contig2159:20062..200851691480924.046353-UTR-H-paniculata_contig2159:20062..20085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2159 20063..20085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2159.5696.1

>prot_H-paniculata_contig2159.5696.1 ID=prot_H-paniculata_contig2159.5696.1|Name=mRNA_H-paniculata_contig2159.5696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MRTFINASYRRQRVKTDVDGGRPGRRSAIPLAVLGVCMAAVLYSNVAHYP
DQSSTASTAVTTPAGKGQAYSVDNVLVTDAIGEGHTPSESREPRTGEQQG
QRDGDRWGEESAAPNPSSAGGRDVSSRASVLPKIELDAEQVRVLLSAEFE
QEQQQEGEAEVGQNRASTIITAVAKVAAENQRAVEARTTTEGWNVEAGWG
WDANGAKRGEQVGEGDEPAAKTSGPASGASGQEEEGGAGDDRQQPLEEGG
GHAAVAIE
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mRNA from alignment at H-paniculata_contig2159:15070..20085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2159.5696.1 ID=mRNA_H-paniculata_contig2159.5696.1|Name=mRNA_H-paniculata_contig2159.5696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5016bp|location=Sequence derived from alignment at H-paniculata_contig2159:15070..20085- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGCTAAAAGCTCTGAAGAGGATGAGAACTTTCATTAACGCATCATAC
AGACGACAACGAGTGAAGACGGTGAGTAGAATTGCTGGCGTAGAGAGATG
GCCACAGAGTTATATACTAAAGTAACGATGAGCCGCTTGATTTTTGTCGC
CTTCGTTTCGAATCTGTCTGCGCTGACTGTTGTTTGTGAGGCGCCCTGAA
AGCTTTCGTCATAGACATAGCGCTGGTCATACCAACCTCTTCAGTGTATA
TGCGATCAGGTTTGGAGGGTGAGCAGAGAGTGCGCAGGGCCATAAACAAG
GGGTTTCTCGGTGTTTCCAACGGTCTCGATACGCTCTCCTCGAACATGAT
GTGTTCGAAAATTGTTGTAACACCAGACTTGCACTTGTCATGTCCTGTCT
ACATAGATGTAGTCAACAAGAACCAGGCTGTTCGGCGAAATGGTACTGAC
CGCAGTGAACTCTATTAGTGTTGTATTGTCTCTACTCAACTCTACTGCAC
TATACTCCCCTGTACTGTCTGCGACGTTAGTTGTATAGCAAGGTGTATAT
TCCGTGATTACTGATGAAGGAAGGTAATATCTAAACCTTTGTTTTCTCGA
ACGACATGATATCGTTGACGCCGAGATGTTTCGTTTGGAAAATCCTGTCA
AGATGTGTCGATAGGCGTTGATTTTCGACAGTCCAAGGCTCTCGCTCTCG
ACAAAATGGAGTTTTAATTCCTCAACGCGGATGTCATCATAATGATACCC
TATACCCATGTGGGAGAGATCGATATTATTCCACCCCAGAAGTATTGGAT
GTTAGGTTGCGCCAACGCAGCTGCACATGCTCTTTTCTCAGAACAAGATT
CTTGAAGGAAGTTACGTTGTGCGTCCACCTCGATCATTTGCCATATGAAG
ATAAATGTGGCTCAATCGGGTCATACGCAACCGGTGTTCTACACCGTACA
ACAATTGAGCAGCGCTTCACGATGTCCAACACATATTTTTACATCGATAT
CAGGTTATCGGATCAGGCATGTCTACAGTTTTTGAGCACAGTGCTCTCTG
TATGATACTTGTACTAGTTTTTCTTCCCTGCCAAGTTTGGGGGGGCAACA
GTCAGTTTTTTTGCAGTGTAAACGTGTTAGCGACTTTGATTGGACTGGCC
TATTTCGAAACTTGAGATCGTGCAGCACAGGCAGTTAATGTGGGGCCAAG
TATTTCAGTCCTTTGAAGTCACTTCTTATGGGACTTGGATTATTTTTCAA
AATTGGATTCTTGGAAACATTCGAAGCGGAGAGTCCAAGTCACCACTTCT
TGTGGGGAAAGAAAATTGGATAATTTCGAAAAATATTTCAAGTGGGACTT
TTTTTCTCTATCTGGCTTGGATAATTTCGAAAAATAATCCAAGTGGGACT
TTTTTTCTCCATTTGGCTTGGATAATTTCGAATAATCGAAGGGCTCTTTT
CGGAATTTGGATTCAATTAAATGGGGAGAACATGACCCAAGACAAGAGCG
GCATCGTCTGGACTCCCAAAACAGGGACGCAACTGTCAGATTTACCAAGG
TTTTGGGGTCATGTTGAGAGCGGGTTCTGAAGTCAACAAATCACGAAGTC
AATAAATTTGCAAGGCCACAGATAGTTATTCTCGACACACGGACCTATGT
GACGAATGCGTCACGTATCGAGATCATTGCCTCCACCAAGAGGGCATTTC
TTTCTATTGGCGTGGTCCCAAAGATAATACATCGGAAGAGCTTGTCAATG
GCAGAAAAACACAAAGTAGTTGCAACAACAATCTGCATGTCTCCGTTGTT
CCATCTCACCAAAATATGTCGTACTCCATATAGATAACAGTAAGCAGTAG
GATAGGAATACGTTGCAACCACATTGCATTTCTTGCATCCTTTCTCAGCG
TCCATATCGCAGGAGTAGTGCAGCATCGCTGGTACGAGTCGCCGCGGCAG
TTTTGCCGGCGGTGGAGTGTGCGTCCACAGTTTGGGTGTGCAAGGCACAG
GTCTTGTTGAAGGCATCATGTATGTGAAATCGAGATAATATTTTCGAGAC
CGAACGGGGCGTTTACCGGTGAGTCGTAATCTCGCATTTGTGCCGATAAC
CGACTGATCAGTTTCTTCATGGAGCCATAGTCTTGCAGAACCTTGGCTGG
CAACTACAGATCGAAGGGGGCCATGACGTGTGCTGGCATATGAACAGTAG
CACAAGTGCAGCTTAAGCCGCTCGTGGCAGACAACTACTATTGCAGTCAT
CGATGTCCCTCGACCAAAAATTGACTTTTAAGAGTACTACGAGAGTGCAC
CCGAGCCTGCCGATTTTTCCGGTGACGGACCTAGTCCGTTTCACCATGGG
AGCCAGCTACTTTCAGTCAAAGCAAAACCTGAAAGCTGCAGCCTTTATGG
GCGAGGCCATGGTGCATACCTAGCGTGTGATAAACGCCAAAGTAGCCCCA
AATAGCTTTGAAGAGTGAACAGTTTGTGCTCAATAGCTCATCACCTTTGC
TGCAACCGTGAAGAAAGGGAACGAATTACAATCAGAAAGTAAGGCTTCAT
TACGAAATAGGGATAGAGGATATGAGTGTGGTCATTATCCAGAGGGTAGC
CCGCAGAATGAACCCGAAGTTCGGTACTAAATCGCGTCGCGAGACACCCC
TACAGCTCCCCAAGCTAGGGGCGCGCACTAGGAAAGCGTGGAGAGATTTT
ATCTCGACCCTTTTGGTTGAAAGTTTGGGCATCCTGTAGGTGAGGCTCGA
AGTTCGGAAATGCCTCAGCTCCTGGGTTGTGCTGCGGACCTACACATTAC
TTACCGGACCAACGCATTACGCACCCCATGAACGATCGCTGAAAACTTGA
TGGGTTTGCCCGAAGATGGGTACTGAACGATAGCCCAAGTTACGTTGAAC
GCTAACGCTATGTCGCTATCGATAGTTTTCGGCCAGTGGAAGTAGGGGTC
GATGTCGAGGTGGACGTGATCATCCCTTCATGTGGATTGTGACTGCGCAA
ATTACATGAATCCTGGGAAATCTATAGAATAATGTACTACAGGCAGTTCA
CCAAGTGTCTTGCGGCACAAACTATAGACCGCTGCCTGTACTGACTGAAC
ACTGCTCTCGAAAAAATTGACTCTTTCTTTGTACATCAACACTACTGTTA
TAGTCTAGAAAGTTAACACTCCCAAGCGATATTACACCGATCTACTCGGT
CAGGTTCTGATCGGTGGTTGCAAGTGTGCTACAATTGGATAGAGTGTGCA
TACTTTTGAATCCGTTGTTTTCGGGTGGGCAGCATAGAAGCAATGAATTT
CCTTTTGGAAATATGAATGAAACATGTCCTTTCATTTGGGGAATTTGGTC
ACATCTCTCGAACAGTATCGACATCATCCTTTGGTTTGGCAATACAGTTG
TCATGCCGTCACTGACTGCGATCACAACTTTCGCTGCTAAATTCATCCGG
ATCGCATCGAAGTACAACTCCTGACGATGGAAAATCTCAACCTTTGGCAG
CATTCACTTCCCGCATGTTCCTGGGTGTGACAGCCATCGACTGTAACGTA
TTATCAGCCTGATCGCAATTTAGAGTTTATCGCACCGTTTATAAAAGAGG
ACTCCCTGCCTCTGGCGACTTCGCACTCGCCAATAGTTCTGTACTTACAC
TCCAACGACTGCCACTCTGATTCCCTTGCCCCTTCTGTACGCACAGGATG
TCGATGGGGGGCGCCCAGGGAGACGCTCGGCGATACCTCTAGCGGTGCTG
GGAGTGTGCATGGCCGCGGTTCTTTACAGCAACGTTGCCCATTATCCCGA
CCAAAGGTAAGCTACAATAACGTGGTGTTTGGTTTAGCCGTAAGTGGGGC
AACCTATTGGCACAAACTTGAGATATTCGTTGGGCCGTGTCTTTGAATGC
AAATGTTCATGTCATTGGCCGACTTGTCTTGGTTTGGTTGTTCGCTGTCT
GTCTGTACTGGTTAGCGTTTTGGCATGTTTTCCTCATTCATTTATCTCGC
TACGGTCAGCTACGTCTGTGCTCACATTTGTGCCCGTTCTGGTCTGTCAC
GCGTAGGTATCTATCTCTGGCTAGCTCAAAACACATGTATGTTCACATCA
GCGTTTTTCCTATGATAGGGCTAGTAGTTGGCGGTGTTCGTCGCTTCCGT
CCTGCGCCATGTTGAAAACATGTAAGCAAACCTCTGCGTCATCGCAAAAT
CTTCGCTCCATGACGCTACTTTCCCCGCCTCCTACGTTCTGGGTCCAGAC
CGCATTCCTGTCTCACGTCGGCGTTTGGTACCACTACTGTCCACCGCGAA
ACAAATCCCTACCAACGCTATTTACTTGACGCAGCCTAATCAAAAAGATA
TTCCCTCCAAAACGCCGGTTGCATGGTGATTCTCCGAACTCCTTCCGCAG
TAGCACCGCCTCGACGGCAGTAACAACACCTGCAGGTAAAGGGCAGGCAT
ATTCCGTTGATAACGTGTTGGTAACAGATGCGATCGGAGAAGGCCACACA
CCGTCCGAGAGCCGCGAGCCAAGGACTGGTGAACAGCAAGGACAGCGAGA
CGGAGATAGGTGGGGTGAGGAAAGCGCCGCCCCGAACCCGTCGTCTGCGG
GAGGAAGGGACGTATCCAGTCGGGCATCTGTACTTCCCAAGATCGAGCTT
GATGCGGAGCAAGTTCGTGTTCTTCTTTCTGCCGAATTTGAGCAAGAGCA
ACAACAGGAAGGAGAAGCCGAGGTCGGCCAAAACCGAGCGTCAACTATTA
TAACTGCGGTCGCTAAGGTCGCCGCGGAAAATCAACGCGCTGTGGAAGCG
AGGACCACGACCGAGGGATGGAACGTAGAGGCCGGATGGGGTTGGGATGC
AAACGGGGCAAAGCGAGGGGAGCAGGTAGGGGAAGGGGATGAACCTGCAG
CGAAAACGTCTGGGCCTGCATCCGGCGCATCTGGACAAGAAGAGGAAGGC
GGGGCTGGAGATGATCGCCAACAACCGCTAGAAGAGGGCGGTGGTCATGC
TGCTGTTGCTATAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2159:15070..20085-

>mRNA_H-paniculata_contig2159.5696.1 ID=mRNA_H-paniculata_contig2159.5696.1|Name=mRNA_H-paniculata_contig2159.5696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig2159:15070..20085- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAACTTTCATTAACGCATCATACAGACGACAACGAGTGAAGACGAT
GAGAACTTTCATTAACGCATCATACAGACGACAACGAGTGAAGACGGATG
TCGATGGGGGGCGCCCAGGGAGACGCTCGGCGATACCTCTAGCGGTGCTG
GGAGTGTGCATGGCCGCGGTTCTTTACAGCAACGTTGCCCATTATCCCGA
CCAAAGGATGTCGATGGGGGGCGCCCAGGGAGACGCTCGGCGATACCTCT
AGCGGTGCTGGGAGTGTGCATGGCCGCGGTTCTTTACAGCAACGTTGCCC
ATTATCCCGACCAAAGTAGCACCGCCTCGACGGCAGTAACAACACCTGCA
GGTAAAGGGCAGGCATATTCCGTTGATAACGTGTTGGTAACAGATGCGAT
CGGAGAAGGCCACACACCGTCCGAGAGCCGCGAGCCAAGGACTGGTGAAC
AGCAAGGACAGCGAGACGGAGATAGGTGGGGTGAGGAAAGCGCCGCCCCG
AACCCGTCGTCTGCGGGAGGAAGGGACGTATCCAGTCGGGCATCTGTACT
TCCCAAGATCGAGCTTGATGCGGAGCAAGTTCGTGTTCTTCTTTCTGCCG
AATTTGAGCAAGAGCAACAACAGGAAGGAGAAGCCGAGGTCGGCCAAAAC
CGAGCGTCAACTATTATAACTGCGGTCGCTAAGGTCGCCGCGGAAAATCA
ACGCGCTGTGGAAGCGAGGACCACGACCGAGGGATGGAACGTAGAGGCCG
GATGGGGTTGGGATGCAAACGGGGCAAAGCGAGGGGAGCAGGTAGGGGAA
GGGGATGAACCTGCAGCGAAAACGTCTGGGCCTGCATCCGGCGCATCTGG
ACAAGAAGAGGAAGGCGGGGCTGGAGATGATCGCCAACAACCGCTAGAAG
AGGGCGGTGGTCATGCTGCTGTTGCTATAGAGTAGCACCGCCTCGACGGC
AGTAACAACACCTGCAGGTAAAGGGCAGGCATATTCCGTTGATAACGTGT
TGGTAACAGATGCGATCGGAGAAGGCCACACACCGTCCGAGAGCCGCGAG
CCAAGGACTGGTGAACAGCAAGGACAGCGAGACGGAGATAGGTGGGGTGA
GGAAAGCGCCGCCCCGAACCCGTCGTCTGCGGGAGGAAGGGACGTATCCA
GTCGGGCATCTGTACTTCCCAAGATCGAGCTTGATGCGGAGCAAGTTCGT
GTTCTTCTTTCTGCCGAATTTGAGCAAGAGCAACAACAGGAAGGAGAAGC
CGAGGTCGGCCAAAACCGAGCGTCAACTATTATAACTGCGGTCGCTAAGG
TCGCCGCGGAAAATCAACGCGCTGTGGAAGCGAGGACCACGACCGAGGGA
TGGAACGTAGAGGCCGGATGGGGTTGGGATGCAAACGGGGCAAAGCGAGG
GGAGCAGGTAGGGGAAGGGGATGAACCTGCAGCGAAAACGTCTGGGCCTG
CATCCGGCGCATCTGGACAAGAAGAGGAAGGCGGGGCTGGAGATGATCGC
CAACAACCGCTAGAAGAGGGCGGTGGTCATGCTGCTGTTGCTATAGAG
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