mRNA_H-paniculata_contig21587.5694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21587.5694.1
Unique NamemRNA_H-paniculata_contig21587.5694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: D7G588_ECTSI (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G588_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-16
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKFVNSKK 150
            VAALTCEATRA+T PF A NFD+RPHRGQI CA+RLR ML+GSK  NS K
Sbjct:  196 VAALTCEATRANTAPFDALNFDVRPHRGQIACADRLRLMLDGSKSANSTK 245
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A397EHA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EHA6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-8
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKF-VNSKKVN 156
            VAALTCEA +AS  PFQ A+   RPHRG +T A  LR ML+ SK+ V S KV+
Sbjct:  194 VAALTCEALKASPSPFQEAHDSARPHRGMLTVATHLRVMLDNSKYAVASDKVD 246
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A6G0XS38_9STRA (Histidine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XS38_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.720e-8
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKFVNS 144
            VAALTCEA +AS+ PFQ A+   RPHRG IT A  LR ML+ SKF  +
Sbjct:  192 VAALTCEALKASSFPFQEAHDVDRPHRGMITVAANLRVMLDNSKFATA 239
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A1W0A0Z3_9STRA (Histidine--tRNA ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0Z3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.780e-8
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDL-RPHRGQITCAERLRAMLEGSKFVNSK 147
            VAALTCE T+A T PF     D  RPHRG IT A  LRAML+GSK  N++
Sbjct:  189 VAALTCEVTKAQTAPFNVEFHDATRPHRGIITSATNLRAMLDGSKATNAQ 238
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A1V9Z5Y5_9STRA (Histidine--tRNA ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Y5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.450e-7
Identity = 29/49 (59.18%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFD-LRPHRGQITCAERLRAMLEGSKFVNS 144
            VAALTCE  +A T PF     D  RPHRG IT A  LRAML+GSK  N+
Sbjct:  187 VAALTCEVRQAQTAPFNVEFHDSARPHRGIITSATHLRAMLDGSKATNA 235
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A840EQX0_9FLAO (Histidine ammonia-lyase n=1 Tax=Mesonia hippocampi TaxID=1628250 RepID=A0A840EQX0_9FLAO)

HSP 1 Score: 52.0 bits (123), Expect = 3.270e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKFVNSKK 150
            ++ ++ EA   ++ PF A   D+RPHRGQI  AER+R+ LEGS+ +N  K
Sbjct:  224 ISTISLEAYDGNSSPFTALVHDIRPHRGQIQTAERVRSFLEGSQLINQPK 273
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A8G0HAP9_9BACT (Histidine ammonia-lyase n=1 Tax=Prevotella sp. Rep29 TaxID=2691580 RepID=A0A8G0HAP9_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 5.490e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKFVNSKKVN 156
            +AA++ EA      PF  A   +RPH+GQI  A R+R +LEGS+ +   KVN
Sbjct:  223 IAAMSLEAYDGRIEPFTLAVHTVRPHKGQIDTANRMRELLEGSQLIKQPKVN 274
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BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Match: A0A7C1LH00_9ARCH (Histidine ammonia-lyase n=3 Tax=root TaxID=1 RepID=A0A7C1LH00_9ARCH)

HSP 1 Score: 48.1 bits (113), Expect = 7.520e-5
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKFVNS 144
            +AALT E+  AS  PF      LRPH+G I  AER+R +L+GS+ V S
Sbjct:  224 IAALTLESYMASPQPFAKKLIQLRPHKGAIIVAERIRKLLDGSQIVES 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21587.5694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G588_ECTSI1.610e-1676.00Histidyl-tRNA Synthetase Similar to Histidine Ammo... [more]
A0A397EHA6_9STRA1.540e-858.49Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0XS38_9STRA7.720e-860.42Histidine--tRNA ligase n=1 Tax=Aphanomyces euteich... [more]
A0A1W0A0Z3_9STRA7.780e-860.00Histidine--tRNA ligase (Fragment) n=1 Tax=Thrausto... [more]
A0A1V9Z5Y5_9STRA9.450e-759.18Histidine--tRNA ligase n=1 Tax=Achlya hypogyna Tax... [more]
A0A840EQX0_9FLAO3.270e-646.00Histidine ammonia-lyase n=1 Tax=Mesonia hippocampi... [more]
A0A8G0HAP9_9BACT5.490e-544.23Histidine ammonia-lyase n=1 Tax=Prevotella sp. Rep... [more]
A0A7C1LH00_9ARCH7.520e-550.00Histidine ammonia-lyase n=3 Tax=root TaxID=1 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21587contigH-paniculata_contig21587:123..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog2880.D7G588
Preferred nameHARS
KEGG rclassRC00055,RC00523
KEGG koko:K01892,ko:K06675
KEGG ReactionR03655
KEGG Pathwayko00970,ko04111,map00970,map04111
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000166,GO:0002119,GO:0002164,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004821,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006427,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0032501,GO:0032502,GO:0032504,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048468,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Histidyl-trna synthetase
EggNOG OGsCOG0124@1,COG2986@1,KOG0222@2759,KOG1936@2759
Ec32 ortholog descriptionHistidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase
Ec32 orthologEc-14_006630.1
EC6.1.1.21
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03036
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.01014-CDS-H-paniculata_contig21587:122..3021622929584.01014-CDS-H-paniculata_contig21587:122..302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21587 123..302 +
1691480923.984378-CDS-H-paniculata_contig21587:122..3021691480923.984378-CDS-H-paniculata_contig21587:122..302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21587 123..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21587.5694.1prot_H-paniculata_contig21587.5694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21587 123..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21587.5694.1

>prot_H-paniculata_contig21587.5694.1 ID=prot_H-paniculata_contig21587.5694.1|Name=mRNA_H-paniculata_contig21587.5694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
VAALTCEATRASTGPFQAANFDLRPHRGQITCAERLRAMLEGSKFVNSKK
VNFCNGTCA*
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mRNA from alignment at H-paniculata_contig21587:123..302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21587.5694.1 ID=mRNA_H-paniculata_contig21587.5694.1|Name=mRNA_H-paniculata_contig21587.5694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig21587:123..302+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCGGCTCTCACGTGCGAGGCGACGCGGGCGAGCACTGGCCCCTTCCA
AGCCGCGAACTTCGACTTGCGGCCCCATCGTGGGCAGATCACCTGCGCGG
AACGCCTCCGAGCTATGCTGGAGGGTTCCAAGTTCGTCAACTCGAAGAAG
GTGAATTTTTGTAATGGAACTTGTGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21587:123..302+

>mRNA_H-paniculata_contig21587.5694.1 ID=mRNA_H-paniculata_contig21587.5694.1|Name=mRNA_H-paniculata_contig21587.5694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig21587:123..302+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCGGCTCTCACGTGCGAGGCGACGCGGGCGAGCACTGGCCCCTTCCA
AGCCGCGAACTTCGACTTGCGGCCCCATCGTGGGCAGATCACCTGCGCGG
AACGCCTCCGAGCTATGCTGGAGGGTTCCAAGTTCGTCAACTCGAAGAAG
GTGAATTTTTGTAATGGAACTTGTGCTTGAGTAGCGGCTCTCACGTGCGA
GGCGACGCGGGCGAGCACTGGCCCCTTCCAAGCCGCGAACTTCGACTTGC
GGCCCCATCGTGGGCAGATCACCTGCGCGGAACGCCTCCGAGCTATGCTG
GAGGGTTCCAAGTTCGTCAACTCGAAGAAGGTGAATTTTTGTAATGGAAC
TTGTGCTTGA
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