mRNA_H-paniculata_contig21586.5693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21586.5693.1
Unique NamemRNA_H-paniculata_contig21586.5693.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21586.5693.1 vs. uniprot
Match: D7FJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.430e-32
Identity = 148/361 (41.00%), Postives = 173/361 (47.92%), Query Frame = 1 
Query:    4 SRGLTPAAAYRANAAG----GGGDG---GLVVDEGGRGGEATSEAGGPTGSGAVNAVADMEDSIMRGPGQRK---------ADSAEELARKFRPQVDDILELERQLSKLGLETRAGRAGSAGGRATKARLRSGGAGGTPGAHLSSALGESFCLLNQSVIFGGGLAALATGAPPVDAAAVGSNGYXXXXXXXGGTRITXXXXXXXXXXXXDREMLFSR-----------PAIPPSSVALDSAASAGXXXXXXXXXERRPLHRNSDGTVTARDSLSRSYGT-HGVDGNVERIGWAAAASKAGDGVDGAARERHSPSSAGQQQQNMADQETQQAEIMRLLTCLKTLGDENLSLMKECEDRDKVR 1002
            SR LTPA AYRA AAG    G GDG    +V           S + GP          DM+DSIMRG               D+A ELA+KFRPQ DD+LELERQL+KLGLE++ G     GGRA + RL SGGA      HLSSALG+SF  LN+SVIFGGG A    G  P +A   G NG         GTR+                    R           P IP S    D+                 P   N+ G     D+  R  G   G D      G   A   AG+G  G  R     SSA ++ + + ++E QQ EIMRLLTCLKTLGDEN+SLMKECEDRDKVR
Sbjct:   97 SRDLTPAEAYRAAAAGVKATGKGDGRRENVVXXXX----XXXSHSVGP----------DMDDSIMRGTVANGNAVEAKGGGCDAAAELAQKFRPQRDDLLELERQLAKLGLESKMG---GPGGRARQ-RLSSGGA-----PHLSSALGDSFFFLNKSVIFGGGGAG---GNGPANAYGNG-NGPAAGVLGSPGTRLGVTNPPGGGGGGWRSTSAPRRFNESDTSPEGAPQIP-SGRGSDNVGDGTRADGRVAGGGETPRVGNTVGR--GADTARRVQGPGSGADRPSAGAGGVWAGESAGEGGGGEGRPALLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDKVR 427
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BLAST of mRNA_H-paniculata_contig21586.5693.1 vs. uniprot
Match: A0A6H5KVB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB2_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.400e-29
Identity = 124/303 (40.92%), Postives = 149/303 (49.17%), Query Frame = 1 
Query:  160 MEDSIMRGPGQRK---------ADSAEELARKFRPQVDDILELERQLSKLGLETRAGRAGSAGGRATKARLRSGGAGGTPGAHLSSALGESFCLLNQSVIFGG----GLAALATGAPPVDAAAVGS-NGYXXXXXXXGGTR--ITXXXXXXXXXXXXDREMLFSRPAIP------PSSVALDSAASAGXXXXXXXXXERRPLHRNSDGTVTARDSLSRSYGTH-GVDGNVERIGWAAAASKAGDGVDGAARERHSPSSAGQQQQNMADQETQQAEIMRLLTCLKTLGDENLSLMKECEDRDKV 999
            M+DSIMRG               D+A ELA+KFRPQ DD+LELERQL+KLGLE++ G     GGRA + RL SGGA      HLSSALG+SF  LN+SVIFGG    G   +A G P   A A G+ NG         GTR  +T                     A P      PS    D+                 P   N+ G     D+  R  G   G D      G A A   A +G  G  R     SSA ++ + + ++E QQ EIMRLLTCLKTLGDEN+SLMKECE+RDK 
Sbjct:    1 MDDSIMRGTAANGNAVEANGGGCDAAAELAKKFRPQRDDLLELERQLAKLGLESKMG---GPGGRARQ-RLSSGGA-----PHLSSALGDSFFFLNKSVIFGGAGAGGNGLVAVGGP---ANAYGNGNGPAAGVLGSPGTRPGVTNPPGGGGGRSTSAPRRFNEGDASPEGAPQIPSGRGSDNVGDGTRADGRVAGGGEIPRVGNTVGR--GADTARRVQGPGCGADRPSAGAGGAWAGESAREGGGGEGRPSLLLSSAEEEARRVREEEAQQGEIMRLLTCLKTLGDENVSLMKECEERDKA 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21586.5693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJW1_ECTSI4.430e-3241.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVB2_9PHAE8.400e-2940.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21586contigH-paniculata_contig21586:346..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1002
Cds size1002
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21586.5693.1prot_H-paniculata_contig21586.5693.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21586 346..2448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.8910477-CDS-H-paniculata_contig21586:345..5781622929583.8910477-CDS-H-paniculata_contig21586:345..578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21586 346..578 +
1691480923.9549055-CDS-H-paniculata_contig21586:345..5781691480923.9549055-CDS-H-paniculata_contig21586:345..578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21586 346..578 +
1622929583.9091496-CDS-H-paniculata_contig21586:1529..21661622929583.9091496-CDS-H-paniculata_contig21586:1529..2166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21586 1530..2166 +
1691480923.964532-CDS-H-paniculata_contig21586:1529..21661691480923.964532-CDS-H-paniculata_contig21586:1529..2166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21586 1530..2166 +
1622929583.9486434-CDS-H-paniculata_contig21586:2316..24481622929583.9486434-CDS-H-paniculata_contig21586:2316..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21586 2317..2448 +
1691480923.973629-CDS-H-paniculata_contig21586:2316..24481691480923.973629-CDS-H-paniculata_contig21586:2316..2448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21586 2317..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21586.5693.1

>prot_H-paniculata_contig21586.5693.1 ID=prot_H-paniculata_contig21586.5693.1|Name=mRNA_H-paniculata_contig21586.5693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=334bp
ASRGLTPAAAYRANAAGGGGDGGLVVDEGGRGGEATSEAGGPTGSGAVNA
VADMEDSIMRGPGQRKADSAEELARKFRPQVDDILELERQLSKLGLETRA
GRAGSAGGRATKARLRSGGAGGTPGAHLSSALGESFCLLNQSVIFGGGLA
ALATGAPPVDAAAVGSNGYGGGGGGAGGTRITGGGVGGTRVGGGDREMLF
SRPAIPPSSVALDSAASAGAVAAAAAAAERRPLHRNSDGTVTARDSLSRS
YGTHGVDGNVERIGWAAAASKAGDGVDGAARERHSPSSAGQQQQNMADQE
TQQAEIMRLLTCLKTLGDENLSLMKECEDRDKVR
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mRNA from alignment at H-paniculata_contig21586:346..2448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21586.5693.1 ID=mRNA_H-paniculata_contig21586.5693.1|Name=mRNA_H-paniculata_contig21586.5693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2103bp|location=Sequence derived from alignment at H-paniculata_contig21586:346..2448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCCGAGGCCTCACGCCGGCGGCGGCTTATCGAGCCAACGCAGCGGG
TGGAGGTGGTGACGGCGGCTTGGTGGTGGACGAGGGCGGGCGGGGTGGGG
AGGCGACGTCGGAAGCAGGCGGTCCGACAGGGTCCGGGGCCGTTAATGCC
GTAGCTGATATGGAGGATAGCATTATGAGGGGGCCTGGGCAACGGAAGGC
CGATTCCGCTGAGGAACTTGCGAGAAAGTTCAGGTGGGCGCCCTTGTTGT
GAATTTAAGGGGGTAGGGCTTGGAGAGGACGTTTGGTGTTTGGCGATCGT
GTCAAGGTTTAACGTTTGCCCTCGTGACTTTGAAGACTGATGGGTTCGAT
CACGATGATGGCGACAAATACTGGGAGAGTGGGATGTATATGTGACTTTT
TTTCTTTTTTTTTTCTCTCCTTGAAAAAGTTACATTTTTGACTTGAAATG
TTTTTGTACCTCTAGATCTTAATGCACAACCGAGCGATCTTTTTTTCCCA
CCTTTTTGTATGCCTACGTATCACTTGAAGGTTTTTTGGTGTGATTGATG
GTCGTTATGGAATAGACCGAAAAATACCGCGTTTATAGGAGTATTTTCGT
GATAATGGTGATGATGATGATGATAATGATAATAGTCGACTATGTGATGT
GACATTACTCCTCGGCATTAGTCGGATTAGTAAGTAGTCGTTGGATCTGT
GGAATCCTCCTACAGCCATTTCCGCACACCGGTCAGCCTTAGCCCACAAC
AGACCTGATAATAACAGTAAATAGTGAAAATGAGGTAAAGTAGTACATGT
TCCGCCTCCAAGTTCGCAACACATTTCGCCATAACGTCCCCGTGCGCAGA
ACAACCGGGTCAAACGCCATCGTCACACCATCCCACGACATAGTGATACA
CCAACGGCAACCCCATCAAAAGTGTTGCTCTTGCCCTCCCCCCCCCCCTC
CCTCCCCCCCGCGCACAACAATAACTCACCTGGAGTTCTTTCCTTCCTCA
CTCCGTCCCCGAAACCACATGCCCCATACGATACACCAACCCACGCGGAA
CCGTACCGAGCGGAATTGCGTGCCCCGAATCGAAATCGCACGAACTGATC
CCAACTTACTCGAACCGAGCACGTAGCAGACCTCGAGCTTAGAAGCCCCA
AGACCAAAATCCAACCCAACTGCACATGCAACAGACCACAAGTGGACGAC
ATCCTCGAGCTAGAAAGACAGCTATCCAAGCTGGGACTGGAGACCCGAGC
CGGTCGCGCGGGAAGTGCGGGCGGCAGAGCCACAAAAGCTCGTCTCCGCA
GCGGAGGCGCCGGCGGGACACCGGGCGCGCACCTTTCCTCTGCCCTCGGA
GAATCGTTCTGTCTCTTGAACCAGTCTGTTATTTTTGGCGGTGGATTGGC
GGCGCTGGCGACAGGAGCGCCGCCGGTGGATGCTGCCGCAGTTGGGAGCA
ACGGATATGGAGGGGGCGGCGGGGGGGCGGGCGGGACACGGATTACGGGA
GGAGGCGTCGGTGGCACTAGGGTTGGTGGTGGTGATCGTGAGATGTTGTT
TTCACGTCCCGCGATACCGCCGTCATCCGTGGCGCTGGATAGTGCCGCAT
CAGCAGGAGCAGTGGCGGCGGCGGCGGCGGCGGCCGAACGAAGACCTTTG
CATCGCAACAGTGACGGTACGGTAACGGCTCGGGATTCATTATCTCGATC
TTATGGCACACATGGCGTGGACGGGAATGTGGAGAGGATAGGCTGGGCAG
CGGCGGCGTCGAAGGCTGGAGATGGGGTAGATGGCGCAGCGCGGGAGAGG
CACTCGCCTTCCTCTGCGGGTGTGAGAGAGGGCAGTGATGAACGGCGAGA
TAGGCGAAGGGCGAAGGAGTTGGGGAGATCTAGGGACGACAGGGACGGGG
GGAGATATGAGGCGAGAGGGCAGTACGATGGGATAGGGGAGCGGCGAGCG
CGACAGCAGGATTCGCAGCAGCAGCAGCAGCAGAATATGGCGGATCAGGA
GACGCAACAGGCCGAGATCATGCGATTGTTGACCTGCCTCAAAACTCTAG
GAGACGAAAATCTGTCTCTCATGAAGGAATGTGAGGACCGCGACAAGGTG
AGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21586:346..2448+

>mRNA_H-paniculata_contig21586.5693.1 ID=mRNA_H-paniculata_contig21586.5693.1|Name=mRNA_H-paniculata_contig21586.5693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at H-paniculata_contig21586:346..2448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCCGAGGCCTCACGCCGGCGGCGGCTTATCGAGCCAACGCAGCGGG
TGGAGGTGGTGACGGCGGCTTGGTGGTGGACGAGGGCGGGCGGGGTGGGG
AGGCGACGTCGGAAGCAGGCGGTCCGACAGGGTCCGGGGCCGTTAATGCC
GTAGCTGATATGGAGGATAGCATTATGAGGGGGCCTGGGCAACGGAAGGC
CGATTCCGCTGAGGAACTTGCGAGAAAGTTCAGGCCTCCCGAGGCCTCAC
GCCGGCGGCGGCTTATCGAGCCAACGCAGCGGGTGGAGGTGGTGACGGCG
GCTTGGTGGTGGACGAGGGCGGGCGGGGTGGGGAGGCGACGTCGGAAGCA
GGCGGTCCGACAGGGTCCGGGGCCGTTAATGCCGTAGCTGATATGGAGGA
TAGCATTATGAGGGGGCCTGGGCAACGGAAGGCCGATTCCGCTGAGGAAC
TTGCGAGAAAGTTCAGACCACAAGTGGACGACATCCTCGAGCTAGAAAGA
CAGCTATCCAAGCTGGGACTGGAGACCCGAGCCGGTCGCGCGGGAAGTGC
GGGCGGCAGAGCCACAAAAGCTCGTCTCCGCAGCGGAGGCGCCGGCGGGA
CACCGGGCGCGCACCTTTCCTCTGCCCTCGGAGAATCGTTCTGTCTCTTG
AACCAGTCTGTTATTTTTGGCGGTGGATTGGCGGCGCTGGCGACAGGAGC
GCCGCCGGTGGATGCTGCCGCAGTTGGGAGCAACGGATATGGAGGGGGCG
GCGGGGGGGCGGGCGGGACACGGATTACGGGAGGAGGCGTCGGTGGCACT
AGGGTTGGTGGTGGTGATCGTGAGATGTTGTTTTCACGTCCCGCGATACC
GCCGTCATCCGTGGCGCTGGATAGTGCCGCATCAGCAGGAGCAGTGGCGG
CGGCGGCGGCGGCGGCCGAACGAAGACCTTTGCATCGCAACAGTGACGGT
ACGGTAACGGCTCGGGATTCATTATCTCGATCTTATGGCACACATGGCGT
GGACGGGAATGTGGAGAGGATAGGCTGGGCAGCGGCGGCGTCGAAGGCTG
GAGATGGGGTAGATGGCGCAGCGCGGGAGAGGCACTCGCCTTCCTCTGCG
GGTACCACAAGTGGACGACATCCTCGAGCTAGAAAGACAGCTATCCAAGC
TGGGACTGGAGACCCGAGCCGGTCGCGCGGGAAGTGCGGGCGGCAGAGCC
ACAAAAGCTCGTCTCCGCAGCGGAGGCGCCGGCGGGACACCGGGCGCGCA
CCTTTCCTCTGCCCTCGGAGAATCGTTCTGTCTCTTGAACCAGTCTGTTA
TTTTTGGCGGTGGATTGGCGGCGCTGGCGACAGGAGCGCCGCCGGTGGAT
GCTGCCGCAGTTGGGAGCAACGGATATGGAGGGGGCGGCGGGGGGGCGGG
CGGGACACGGATTACGGGAGGAGGCGTCGGTGGCACTAGGGTTGGTGGTG
GTGATCGTGAGATGTTGTTTTCACGTCCCGCGATACCGCCGTCATCCGTG
GCGCTGGATAGTGCCGCATCAGCAGGAGCAGTGGCGGCGGCGGCGGCGGC
GGCCGAACGAAGACCTTTGCATCGCAACAGTGACGGTACGGTAACGGCTC
GGGATTCATTATCTCGATCTTATGGCACACATGGCGTGGACGGGAATGTG
GAGAGGATAGGCTGGGCAGCGGCGGCGTCGAAGGCTGGAGATGGGGTAGA
TGGCGCAGCGCGGGAGAGGCACTCGCCTTCCTCTGCGGGTCAGCAGCAGC
AGAATATGGCGGATCAGGAGACGCAACAGGCCGAGATCATGCGATTGTTG
ACCTGCCTCAAAACTCTAGGAGACGAAAATCTGTCTCTCATGAAGGAATG
TGAGGACCGCGACAAGGTGAGACAGCAGCAGCAGAATATGGCGGATCAGG
AGACGCAACAGGCCGAGATCATGCGATTGTTGACCTGCCTCAAAACTCTA
GGAGACGAAAATCTGTCTCTCATGAAGGAATGTGAGGACCGCGACAAGGT
GAGA
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