mRNA_H-paniculata_contig2158.5691.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2158.5691.1
Unique NamemRNA_H-paniculata_contig2158.5691.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2158.5691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2158contigH-paniculata_contig2158:11019..15157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1234
Cds size1233
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2158.5691.1prot_H-paniculata_contig2158.5691.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2158 11019..15157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.7100835-CDS-H-paniculata_contig2158:11018..116781622929583.7100835-CDS-H-paniculata_contig2158:11018..11678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 11019..11678 -
1691480923.875717-CDS-H-paniculata_contig2158:11018..116781691480923.875717-CDS-H-paniculata_contig2158:11018..11678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 11019..11678 -
1622929583.7346985-CDS-H-paniculata_contig2158:12293..124941622929583.7346985-CDS-H-paniculata_contig2158:12293..12494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 12294..12494 -
1691480923.887327-CDS-H-paniculata_contig2158:12293..124941691480923.887327-CDS-H-paniculata_contig2158:12293..12494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 12294..12494 -
1622929583.7528827-CDS-H-paniculata_contig2158:14785..151571622929583.7528827-CDS-H-paniculata_contig2158:14785..15157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 14786..15157 -
1691480923.8965719-CDS-H-paniculata_contig2158:14785..151571691480923.8965719-CDS-H-paniculata_contig2158:14785..15157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 14786..15157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2158.5691.1

>prot_H-paniculata_contig2158.5691.1 ID=prot_H-paniculata_contig2158.5691.1|Name=mRNA_H-paniculata_contig2158.5691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=411bp
AATSVATAAGNHSGGSSGGGCGCVAPSSTATRTNGFEKLSHQGCHNNPLN
ISKVCVANSAKVGSGQSNKRHSIAAESSVVVAAPAVGGARFSGRGSGGGG
GGGFSGAAKTIEESSVQHYAPMQPMSDLAGPPLYGDETKVLRLWAKEKLR
GFTKRRVKDVWALLLDKCRLAPPSLRRAVLGHLRAVENPSKVCRNLGAVA
DVLIEQLELQNKNERRDSICAQGSQTNEETGDSGSISRGNSSNGTNSKNN
NTNKNKSGVRDDMSNNGNRTDPGKLSVSDNNEKEDRSDTSGKEGEKERRL
CNPIEVVDVYSQQVLNTSERRRIDSNNTGNMEGKHGGSGTPSPSKYTRCR
AGVDPVHTLNNSLNGTCNAEASLTRCARELSSTLTSLGAQHEGSRNGTLK
SGVIPDGKDAE
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mRNA from alignment at H-paniculata_contig2158:11019..15157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2158.5691.1 ID=mRNA_H-paniculata_contig2158.5691.1|Name=mRNA_H-paniculata_contig2158.5691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4139bp|location=Sequence derived from alignment at H-paniculata_contig2158:11019..15157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCTACTTCTGTTGCTACTGCTGCTGGCAATCACAGCGGTGGTAGTAG
TGGCGGTGGTTGTGGCTGCGTGGCCCCTAGCAGTACCGCTACCCGTACGA
ACGGGTTCGAAAAGCTTTCTCATCAAGGTTGTCATAATAATCCCCTGAAC
ATCAGCAAAGTTTGTGTAGCAAACTCCGCCAAGGTTGGCAGTGGGCAATC
GAATAAACGGCATTCTATTGCTGCCGAGTCTTCTGTGGTGGTAGCTGCTC
CGGCCGTCGGGGGCGCTCGCTTCTCTGGCCGTGGAAGCGGCGGCGGCGGC
GGCGGCGGTTTCAGCGGCGCGGCCAAGACTATTGAAGAGTCAAGTGTCCA
GCACTATGCTCCCATGCAACCTGTGAGTGAGTGCCGTAAGGAGGCTTCCC
GAGTCCGTATTTAGTAATGCCAAACCGCAAAAAAAATATTTATTCAGTAC
GATATACTTTATTGTTTCTGAGCGATATTTTCATCGAAGAAACTTTTCGG
TTTGCGGATTCCCTGAAATCTGGCTGGCATCTGTAACAGCATGATCAAGG
TAGTGTTTCTTGGGGCAGTTGTCATCATAAAACACGACGTCTACCCGGCC
GTTGTGCTAATGTCGTAGAGGATACGGTTACACACATGTTGAAAGTCATT
GCTCGCGACCGCTTTATCTCTTATATTGAAATCGAGTATTTGCCGAGAGA
GAGAATTATAGGTCCCACTATGTTAACTTTCATATCTTGGGAACTTTGAA
CTGGGAATTGTGGAAAAATTGGCTCTTCGTGTCCTCCCGAAATTCCCAGA
TTTCAACACTTGGATTTTTCCGCCCCAAAAACGTGCTCGCCATTTGTGAA
GGGTGGTTTTGCCGGCGAGCACGTTTTGGGCGTAAACGATGAAATCTGGA
AATATGGGAATTTGCCGTGGAACGAAAAAAGAGTTGAATTTCCCTGAATT
CAAAATTGCGAACACCGTTGAATGGAAAATTTGGGTCATATCAATAGAAT
CGACTCCTTGAATTTTTTTAATTTGAGAAGCTTGGCTCTTTTCCCGTTTC
ACCCAAATCCCAGATTGCTATGTTGGATTACTTCTGCCCAAGGGTCAATA
CTAGCCCATCGGAAAATTGGGAAATTTTGGATTTGATGTCGTCACAGCAG
AGCCGAAACTTGATTAAAAAGCTGTGAATCATGGCTTTCATCAAGCGCTT
GTGCAGATGGGATTTTGTTTTGTTCTCGTCAGTACATTTTGACTCTCGTC
CAACGACTTGAAAATCTGAATTTACCACTTTTTCGAATTTTCCCTTCTGC
TAGGAATGACCATTACTCTTTGGGTTTGGTGTCTTACCCGGGTATGTCTG
TATTCATCACTACATACAATCTTTCAAGGAACCGTGCCAGGATGTTTTCT
CAAGGATGGCGTTTTCCTGAAATAGGAAATAAGAGAAAATTTTTCGTACG
AAAGCCCAGCAGCATTCAACAATCAGAGATTTCGTTGCTTCAAGAGTGTA
AATTCCGTGAGCGCCTCCGTATTTTCCATTGCGGCTCAATTGACGCAGTC
AACCCAAATTGAAATTAGGCTAGTACCAAATCTTGATGAAAAACAAGCGA
TAGCTTACGATGCTAGATCACTTCGCATAATGAGGGGTTTATACAACACT
CGTTCCGAAACGGCAAAACTCAACCGTGGGGATATCTTATTATTGTAGAA
GTACCGAAAGAAAAGTGATCCTCGTCGTTTCTGATCACGGCTGCTAAACT
CCATACTAAAAAGGAATCTTCATGGATATTGTGCCTACTTGTGAGGGTAG
TCAAGCGTTGTGGATGGGCGCGATCGCAACACCCTGTAGGCGTGGCAGAG
TGACTGTTAGCCAAGCGTAACTCGACACAATGAGCATGGCTATGCAGTCA
GTGATTTTTCCTGGAACTCAGTGGTGCAAAACGCATGGCCCCTCGCACAT
CGGCTTGCTGTGCTCGCAAGTGGCTCACAAAGCTCGATTGTAGGCCTAGT
CGTGGGCTTAAGCTCCTTCCCTCACAGCGCTTACGATGTGTGTTAACAGT
GGTTGCATACGCCGGGGTGGAAAGCTGATTGTAGGCATAATCAATGTTCA
TGACCCACATCGGCATGCTAATTCTCTGAATTCGCCTTTGTAAAACTTAC
ATGGGTACAAAATTGCAAATACGTTCCGAACAGATGATCAGCCGTCATCA
GTAACACCATCTTTTTTATAAGGTTTGCCCCTCCCCTACCGACGGTTGTT
TTTAGCGGAAACGATGGGATCTGTTTTGCGTTGTCTCTCGGAACTTAAGA
GTCAATTTTCCGGAATTCCGAATTCGCTACAGAATGTATGTAAGCCATCC
TAACGCAAAATCAGACCACTAGTTGTAACTGCCATGCCTAGACTTGGGGG
GGGATTTTTTAACTCTGAGGAAAGGTTGACTCTTGATACCCGTCCGAAAT
TTCCAGAATTCACGTTTGTTTTTCATCTCCCGTTTGTACCAATGGTCGCT
ACGAGTAACTTGCTTTTTGGACTGGCGCATATCGTATTTAGCAATCTCTC
TCTCTCTATATATATATTGTACGAAAAACTGAGCGTGAATGCTTTATGCT
GTTGCCCCGCCTCTCCTCTGGCACCCGTGCATCTATCGTACCGTGTCGTG
TCGTCGACATCAGATGTCCGATCTAGCCGGCCCCCCATTGTATGGCGACG
AAACCAAAGTGCTGAGGCTATGGGCGAAGGAAAAACTGCGCGGCTTCACC
AAGCGTAGGGTGAAGGACGTGTGGGCTTTGCTACTTGACAAATGCAGGCT
AGCCCCCCCGTCTCTACGCCGGGCGGTCCTTGGACATTTGCGTGCTGTAG
AAAACCCATCTAAGGTAAGTTGTGCTTGCTATGGGAGGTAGATAGGAGGG
GAGAGGGGGAGGAGGCGAGTGAAGGCGTACTCGTCTTTTGCATGACGTAG
ATGATAGACCATTGACCACGCGTCCTCGAGAGGACGGCGCTTTGTTCCTA
TTAGAGTGATTCCCGATGGCTAATCGCGCTCTCCTACATTGTCGAATGTT
GCTCACAAATGTTCTTACCTATTCTATCTACTTGAAAATTTTCGTGTTCA
TCCTCCAATTTGCGCTAATTCACTCGTATATGTCTTTCTTTCTTTTTCAC
ACAAGAAGTTGGCGGGGGGGGGATTACTCACATGAAAAAATGCTTGTTCC
CTCATCGTTCACGACCACCGTTAACGATGTTATTTTTCTTGCTCTATCAG
TGTATTCTGCTCTGCAAGTAAGACACCAGGTACTATGTGGTCGGTGGGAT
GGATAGATCTTGTCCTACGATAGGGATTATCCGCTGTTGGTCACAAGGTA
CCCCTTCCTTTGGATTCGAAACACTTGTTCATGAAAACCCAGTCGCTGCC
GCATCTCTCTGTCCCCACTTGTTGGCTCTACTACTGCTGCTGCTGCCTCT
GCTACCAACGAATGGCTTTCACCCGGCAGGTGTGCAGAAATTTGGGTGCA
GTCGCGGATGTCCTGATCGAGCAGCTTGAACTCCAGAACAAGAATGAAAG
AAGAGACAGCATCTGTGCTCAGGGTAGTCAGACGAATGAAGAGACAGGCG
ATAGTGGTAGTATTAGCCGCGGCAATAGCAGCAACGGCACCAATAGCAAA
AACAATAACACTAACAAGAACAAGAGCGGTGTAAGGGACGACATGAGCAA
CAATGGAAATCGAACGGACCCGGGAAAGCTCAGCGTCTCCGACAACAACG
AGAAGGAGGATAGAAGCGACACTAGTGGGAAGGAGGGCGAAAAAGAGCGT
AGATTGTGCAATCCCATCGAAGTTGTTGATGTGTATTCTCAGCAAGTGTT
GAATACTTCCGAACGCAGACGCATTGATAGCAATAATACAGGCAATATGG
AGGGAAAACATGGCGGTAGTGGTACTCCCTCCCCCAGCAAATATACACGC
TGCCGAGCCGGGGTCGATCCTGTCCATACACTGAACAACAGTCTCAATGG
TACCTGTAACGCCGAGGCATCACTAACTAGGTGTGCCAGAGAACTGAGTT
CAACTTTGACATCCCTGGGTGCCCAGCACGAGGGGAGTAGGAATGGTACC
TTGAAGAGCGGGGTTATCCCCGATGGTAAGGATGCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2158:11019..15157-

>mRNA_H-paniculata_contig2158.5691.1 ID=mRNA_H-paniculata_contig2158.5691.1|Name=mRNA_H-paniculata_contig2158.5691.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2466bp|location=Sequence derived from alignment at H-paniculata_contig2158:11019..15157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCTACTTCTGTTGCTACTGCTGCTGGCAATCACAGCGGTGGTAGTAG
TGGCGGTGGTTGTGGCTGCGTGGCCCCTAGCAGTACCGCTACCCGTACGA
ACGGGTTCGAAAAGCTTTCTCATCAAGGTTGTCATAATAATCCCCTGAAC
ATCAGCAAAGTTTGTGTAGCAAACTCCGCCAAGGTTGGCAGTGGGCAATC
GAATAAACGGCATTCTATTGCTGCCGAGTCTTCTGTGGTGGTAGCTGCTC
CGGCCGTCGGGGGCGCTCGCTTCTCTGGCCGTGGAAGCGGCGGCGGCGGC
GGCGGCGGTTTCAGCGGCGCGGCCAAGACTATTGAAGAGTCAAGTGTCCA
GCACTATGCTCCCATGCAACCTGCTGCTACTTCTGTTGCTACTGCTGCTG
GCAATCACAGCGGTGGTAGTAGTGGCGGTGGTTGTGGCTGCGTGGCCCCT
AGCAGTACCGCTACCCGTACGAACGGGTTCGAAAAGCTTTCTCATCAAGG
TTGTCATAATAATCCCCTGAACATCAGCAAAGTTTGTGTAGCAAACTCCG
CCAAGGTTGGCAGTGGGCAATCGAATAAACGGCATTCTATTGCTGCCGAG
TCTTCTGTGGTGGTAGCTGCTCCGGCCGTCGGGGGCGCTCGCTTCTCTGG
CCGTGGAAGCGGCGGCGGCGGCGGCGGCGGTTTCAGCGGCGCGGCCAAGA
CTATTGAAGAGTCAAGTGTCCAGCACTATGCTCCCATGCAACCTATGTCC
GATCTAGCCGGCCCCCCATTGTATGGCGACGAAACCAAAGTGCTGAGGCT
ATGGGCGAAGGAAAAACTGCGCGGCTTCACCAAGCGTAGGGTGAAGGACG
TGTGGGCTTTGCTACTTGACAAATGCAGGCTAGCCCCCCCGTCTCTACGC
CGGGCGGTCCTTGGACATTTGCGTGCTGTAGAAAACCCATCTAAGATGTC
CGATCTAGCCGGCCCCCCATTGTATGGCGACGAAACCAAAGTGCTGAGGC
TATGGGCGAAGGAAAAACTGCGCGGCTTCACCAAGCGTAGGGTGAAGGAC
GTGTGGGCTTTGCTACTTGACAAATGCAGGCTAGCCCCCCCGTCTCTACG
CCGGGCGGTCCTTGGACATTTGCGTGCTGTAGAAAACCCATCTAAGGTGT
GCAGAAATTTGGGTGCAGTCGCGGATGTCCTGATCGAGCAGCTTGAACTC
CAGAACAAGAATGAAAGAAGAGACAGCATCTGTGCTCAGGGTAGTCAGAC
GAATGAAGAGACAGGCGATAGTGGTAGTATTAGCCGCGGCAATAGCAGCA
ACGGCACCAATAGCAAAAACAATAACACTAACAAGAACAAGAGCGGTGTA
AGGGACGACATGAGCAACAATGGAAATCGAACGGACCCGGGAAAGCTCAG
CGTCTCCGACAACAACGAGAAGGAGGATAGAAGCGACACTAGTGGGAAGG
AGGGCGAAAAAGAGCGTAGATTGTGCAATCCCATCGAAGTTGTTGATGTG
TATTCTCAGCAAGTGTTGAATACTTCCGAACGCAGACGCATTGATAGCAA
TAATACAGGCAATATGGAGGGAAAACATGGCGGTAGTGGTACTCCCTCCC
CCAGCAAATATACACGCTGCCGAGCCGGGGTCGATCCTGTCCATACACTG
AACAACAGTCTCAATGGTACCTGTAACGCCGAGGCATCACTAACTAGGTG
TGCCAGAGAACTGAGTTCAACTTTGACATCCCTGGGTGCCCAGCACGAGG
GGAGTAGGAATGGTACCTTGAAGAGCGGGGTTATCCCCGATGGTAAGGAT
GCGGAGGTGTGCAGAAATTTGGGTGCAGTCGCGGATGTCCTGATCGAGCA
GCTTGAACTCCAGAACAAGAATGAAAGAAGAGACAGCATCTGTGCTCAGG
GTAGTCAGACGAATGAAGAGACAGGCGATAGTGGTAGTATTAGCCGCGGC
AATAGCAGCAACGGCACCAATAGCAAAAACAATAACACTAACAAGAACAA
GAGCGGTGTAAGGGACGACATGAGCAACAATGGAAATCGAACGGACCCGG
GAAAGCTCAGCGTCTCCGACAACAACGAGAAGGAGGATAGAAGCGACACT
AGTGGGAAGGAGGGCGAAAAAGAGCGTAGATTGTGCAATCCCATCGAAGT
TGTTGATGTGTATTCTCAGCAAGTGTTGAATACTTCCGAACGCAGACGCA
TTGATAGCAATAATACAGGCAATATGGAGGGAAAACATGGCGGTAGTGGT
ACTCCCTCCCCCAGCAAATATACACGCTGCCGAGCCGGGGTCGATCCTGT
CCATACACTGAACAACAGTCTCAATGGTACCTGTAACGCCGAGGCATCAC
TAACTAGGTGTGCCAGAGAACTGAGTTCAACTTTGACATCCCTGGGTGCC
CAGCACGAGGGGAGTAGGAATGGTACCTTGAAGAGCGGGGTTATCCCCGA
TGGTAAGGATGCGGAG
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