mRNA_H-paniculata_contig21510.5668.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21510.5668.1
Unique NamemRNA_H-paniculata_contig21510.5668.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21510.5668.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 6.910e-43
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:   52 KKALSSVSSSSELFSSLDEDRMQAAAAKALARSRKVAKSTWADVGHGGIGAEAGTDENSSFYACPEERFKTTNSERFGALLKEKKIEKGQRSAGFWRQRPGDSATSASQRFKQSE 396
            K +L+S+SS  +LFSSL+E R+Q A A ALAR+RKVAK TWAD+GHGGIG +AGTDE+SSFYACP ERF TTNSER+  L+K KKIEKGQRSAGF RQR GDSAT AS+R ++SE
Sbjct:   44 KTSLASLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSE 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21510.5668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI0_ECTSI6.910e-4371.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21510contigH-paniculata_contig21510:537..3586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size396
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21510.5668.1prot_H-paniculata_contig21510.5668.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21510 537..3571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.1149137-CDS-H-paniculata_contig21510:536..6861622929581.1149137-CDS-H-paniculata_contig21510:536..686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21510 537..686 -
1691480922.9274917-CDS-H-paniculata_contig21510:536..6861691480922.9274917-CDS-H-paniculata_contig21510:536..686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21510 537..686 -
1622929581.128369-CDS-H-paniculata_contig21510:1945..20711622929581.128369-CDS-H-paniculata_contig21510:1945..2071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21510 1946..2071 -
1691480922.9362478-CDS-H-paniculata_contig21510:1945..20711691480922.9362478-CDS-H-paniculata_contig21510:1945..2071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21510 1946..2071 -
1622929581.1465676-CDS-H-paniculata_contig21510:3466..35711622929581.1465676-CDS-H-paniculata_contig21510:3466..3571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21510 3467..3571 -
1691480922.9444313-CDS-H-paniculata_contig21510:3466..35711691480922.9444313-CDS-H-paniculata_contig21510:3466..3571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21510 3467..3571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.166434-UTR-H-paniculata_contig21510:3571..35861622929581.166434-UTR-H-paniculata_contig21510:3571..3586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21510 3572..3586 -
1691480922.9520755-UTR-H-paniculata_contig21510:3571..35861691480922.9520755-UTR-H-paniculata_contig21510:3571..3586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21510 3572..3586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21510.5668.1

>prot_H-paniculata_contig21510.5668.1 ID=prot_H-paniculata_contig21510.5668.1|Name=mRNA_H-paniculata_contig21510.5668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MWTEMASCSSHQKKALSSVSSSSELFSSLDEDRMQAAAAKALARSRKVAK
STWADVGHGGIGAEAGTDENSSFYACPEERFKTTNSERFGALLKEKKIEK
GQRSAGFWRQRPGDSATSASQRFKQSE
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mRNA from alignment at H-paniculata_contig21510:537..3586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21510.5668.1 ID=mRNA_H-paniculata_contig21510.5668.1|Name=mRNA_H-paniculata_contig21510.5668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3050bp|location=Sequence derived from alignment at H-paniculata_contig21510:537..3586- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCCAGCAGCGGAGATGTGGACCGAGATGGCCTCATGTTCGTCTCACCA
AAAAAAAGCTTTATCGAGCGTGTCGTCCAGTAGCGAGCTCTTCTCTTCAC
TGGATGAAGACCGGATGCAGGTGCGGTGTTACATACCGAAATTTTAATAG
TCCCACAACCGGGGGTGGGGGGGGAGTTGACACGTTTTGAGTCACCGCTG
AGAACATACAATGCATCGTGTCAACTCAGTTGCGTTCATGGGCTTTTGTT
TTGATGTGCAGTTCGTCGAGCCGTCCGCCGACGTTCATTGACGCACTTGT
TCAACCCCCCCCCCCGAAAAGGATGGCAGTATTGCCACTTTGGGGAGTGA
ACACACCCTTGTGGCCAAAGGGCATATTTCAAGTACCGTAGCACACCCTC
TGATATCGCGCATCCCCTGCTACCATTTTTTCAAACCCGATTTTGTCTAG
AGGCGAAGAAAAAGTCTGTGTTGCCACAAAATAGCAGGTCTATCGAAATA
TCTCAATGACATCTTTCCAATGATACCTGTATCGGTGTCATGAGCGAACA
CCGTCGCTGTAAAAAAAAAAAAAGAGTAAAACATTTGAAAAATAAGAAGA
GGAGGTGCGATATCAAAAGGTGCTACGGTACGGTACCCCGTATCCGAGGG
TGAGAGACCCTTATGGTTGTCCAAACGTCCAGGGTCATGTGAGTGTATCT
GGAGAGTCGACGTTCTCGGCTGAGTACAGGTGCTCCTGCAGTGACATCGA
AATATGTGCCGTTGGAACGATCTTGTCGAAGCACATCTGTCGGTAAACGG
GCGCATTCGCGGTGGAAGGTTGCGTTTGCTTTCTCAACAAAAGTCCAGTT
CTCGAGCGTGTTTGCCCCAGCCTCGCTTCCTTCCTACGACGGGGGGGGTG
CCTTAGCTAAAACATTTCACAGAAGTAGCGAAGGGCGGCTATTCCTAGTA
ACGTTTTTTTGAGCGGAATTTCATTAAATATTGACGTCTGGACACCTACT
GTGGAAGTTAATATATTAAAAAATATCCCTTGGACACATATCGGCTTTTC
GCTTCCGCCGCCTTTTTTTTTTTTTTTTTCCAAATAATTTCGCTTAAAAA
TTTAGCAGTCGTTCGGGGTATAAATAATCCTAGGGCTGGAAGCGGGCCGC
TACTTGAAAAAAAAAAATTAAGTAAAATTACACATTTTCTTCCATCTCGA
AAAAACGAAAAATTGTGCCTGAGCCTATTGATTTATCTTCAGTTTATTAT
GATCTTGTGCCCCTAACGAGAAATCAGGAACTAAAAAAAGAAAAAAGACA
GTAATTGGGCGCTATTCTTTTTTTTTTGGGGGGGGGCAAGTTTTCCTTCG
AAATTACTGTGCGTAAGAAGGTGATCCAGTAGTACTTCCTATAATATATA
TATATATATATATATATATATATATATATTGCTCACGAGCCTTAACCCGA
AACAAGAGTGTCTTGATGGGGGTCACTGTAATTCACTGTCCGGAAAAAAC
ACAAACAAAAAACAGGCCGCAGCGGCGAAGGCCCTAGCGCGTTCGCGCAA
GGTGGCCAAATCCACCTGGGCAGACGTCGGGCATGGCGGAATTGGCGCTG
AGGCGGGGACGGACGAGAATTCTTCCTTCTATGCATGCCCGGTGAGCAAA
TGAGACCCGCATGCCTTGATCAATGGAACGTATTTTTTTCCCCCCCGTGC
AGCTTTTGGGTTCGGTAACTTGGGATCTATCTTGATCGAGATCGACTCAT
TAATTCCCGCCGTGGAGATTCTATTGTAATGTGTGTTTGTAGTGCCTGTG
ATTGGTTAGGAAACTTGAACTTGGGCAGGCCCTCTCCCAATATTACGTCG
AATTTCTTCTTTCCTTGTGGAGTAGAAAACGGGAAAGGATTGCTCATGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGGGTAGTCCGAATCGACTCCCAT
CTCGATATTTTCATAGGTATATCCAAATCTGCACTTTGTCGGAGAGAAAA
TCTTACCGCTCTAGAATTACAGGTATGTTGGATTGCTAAGCTCCCTCCGG
TAAAATCGGGTCAAGGGTATTGGGCTGTCCAATATGAAAAAAGAGAGAGT
ACCGTAAGATGATTTGTGTGTCAGTGTTTGGGTTCCTGTTCATGAATAAC
TGTTCCGAAAATGATTTCCTTCGCTTCAAATGAGAGGGGAAGGTCGAGAG
TATCTTGTATCTTGTAGCTTTAGCCCCCAGCAGTTCAAGTGTAGGAAGTA
CGAGCACGCGCTACAATCGACAGTTCATCGGAAACACCCTAGGAAAAGCA
GATGAAGAGAAAGAGAGGATGTTCGAGGCGCGGGCGGAGGGGGGGGGGGG
TTCGAAAGCTGGTTTTTCTAGGCTGTTCTAGTCCAATCGCTCAGATCCGG
AGTCCGAGGATACAAATCCCCATCGGCAAAACCGAACGGATACAAAAAAG
TTGCCCTTGGGGAAGGGGGAGTAGCGTGCCACGCACTGGCCATCAATGAA
AAGTAAAGTAGAGATCAAGTCCATGCACGGTAATGTTCCTGCCTGACGCT
AGGAATATCCCAGCGGATTGGGGGCATATATATATATATATATATATATA
TTCTAACCTCTTTGAGAAACCGTATCGGATCCTGCCTGTATGTTGTCGGA
AGGCGCGTGAAGTAGTAGGGAACGTCGCGCTTAAATCATTGCCGTGCTTT
TTTTTTCTTTTTTCTTTTTTTCCGTTTTGAATCGATTTTTTATTTCTCTG
TGAGCGCGGCATAATGCGATATTGCGCGGTGTAGAAGCATTTTCATCTTT
TGCTTGGACACTTGATTGATTCGTATTCTTTTCGAGTCGACTCTTTTCCT
GTTTGTGTGTGTACGGTAATGATATAATGCAAAATGTAAATGCAATACAG
GAGGAGCGTTTCAAAACGACCAACTCGGAGAGATTTGGCGCTCTACTGAA
AGAGAAGAAGATAGAAAAGGGGCAGCGTTCTGCAGGCTTCTGGCGACAAC
GTCCAGGCGACTCCGCCACGAGTGCCTCTCAACGGTTCAAGCAAAGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21510:537..3586-

>mRNA_H-paniculata_contig21510.5668.1 ID=mRNA_H-paniculata_contig21510.5668.1|Name=mRNA_H-paniculata_contig21510.5668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig21510:537..3586- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGACCGAGATGGCCTCATGTTCGTCTCACCAAAAAAAAGCTTTATC
GAGCGTGTCGTCCAGTAGCGAGCTCTTCTCTTCACTGGATGAAGACCGGA
TGCAGATGTGGACCGAGATGGCCTCATGTTCGTCTCACCAAAAAAAAGCT
TTATCGAGCGTGTCGTCCAGTAGCGAGCTCTTCTCTTCACTGGATGAAGA
CCGGATGCAGGCCGCAGCGGCGAAGGCCCTAGCGCGTTCGCGCAAGGTGG
CCAAATCCACCTGGGCAGACGTCGGGCATGGCGGAATTGGCGCTGAGGCG
GGGACGGACGAGAATTCTTCCTTCTATGCATGCCCGGCCGCAGCGGCGAA
GGCCCTAGCGCGTTCGCGCAAGGTGGCCAAATCCACCTGGGCAGACGTCG
GGCATGGCGGAATTGGCGCTGAGGCGGGGACGGACGAGAATTCTTCCTTC
TATGCATGCCCGGAGGAGCGTTTCAAAACGACCAACTCGGAGAGATTTGG
CGCTCTACTGAAAGAGAAGAAGATAGAAAAGGGGCAGCGTTCTGCAGGCT
TCTGGCGACAACGTCCAGGCGACTCCGCCACGAGTGCCTCTCAACGGTTC
AAGCAAAGCGAGGAGGAGCGTTTCAAAACGACCAACTCGGAGAGATTTGG
CGCTCTACTGAAAGAGAAGAAGATAGAAAAGGGGCAGCGTTCTGCAGGCT
TCTGGCGACAACGTCCAGGCGACTCCGCCACGAGTGCCTCTCAACGGTTC
AAGCAAAGCGAG
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