mRNA_H-paniculata_contig21466.5649.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21466.5649.1
Unique NamemRNA_H-paniculata_contig21466.5649.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21466.5649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21466contigH-paniculata_contig21466:375..1621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21466.5649.1prot_H-paniculata_contig21466.5649.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21466 458..1515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.0193126-UTR-H-paniculata_contig21466:374..4571622929579.0193126-UTR-H-paniculata_contig21466:374..457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21466 375..457 +
1691480922.1511989-UTR-H-paniculata_contig21466:374..4571691480922.1511989-UTR-H-paniculata_contig21466:374..457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21466 375..457 +
1622929579.0722215-UTR-H-paniculata_contig21466:1515..16211622929579.0722215-UTR-H-paniculata_contig21466:1515..1621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21466 1516..1621 +
1691480922.185576-UTR-H-paniculata_contig21466:1515..16211691480922.185576-UTR-H-paniculata_contig21466:1515..1621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21466 1516..1621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.0391004-CDS-H-paniculata_contig21466:457..7041622929579.0391004-CDS-H-paniculata_contig21466:457..704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21466 458..704 +
1691480922.1632764-CDS-H-paniculata_contig21466:457..7041691480922.1632764-CDS-H-paniculata_contig21466:457..704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21466 458..704 +
1622929579.0568213-CDS-H-paniculata_contig21466:1489..15151622929579.0568213-CDS-H-paniculata_contig21466:1489..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21466 1490..1515 +
1691480922.175318-CDS-H-paniculata_contig21466:1489..15151691480922.175318-CDS-H-paniculata_contig21466:1489..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21466 1490..1515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21466.5649.1

>prot_H-paniculata_contig21466.5649.1 ID=prot_H-paniculata_contig21466.5649.1|Name=mRNA_H-paniculata_contig21466.5649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MRGGGDKFFKKVDWWTAIYVTGFFGTIHDFQESCSVVARLDILLLSRVLA
GEGSLVDRNGRYWVVLDFGGFGRLMLVTFPSAGSMSRMLQ*
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mRNA from alignment at H-paniculata_contig21466:375..1621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21466.5649.1 ID=mRNA_H-paniculata_contig21466.5649.1|Name=mRNA_H-paniculata_contig21466.5649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-paniculata_contig21466:375..1621+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCTTCTAGTGTTAACTCGTTTACAAGCGCACAACGACAACTTCTCGA
ACGGATGGTACACTGTTGGACGAGAGGTGGCTAATGCGCGGTGGTGGTGA
TAAGTTTTTCAAGAAGGTTGACTGGTGGACTGCAATATATGTGACTGGCT
TCTTTGGGACGATTCATGATTTCCAGGAGTCGTGCTCAGTTGTAGCGAGG
CTCGACATCTTGCTCCTGAGTAGAGTTCTTGCTGGAGAAGGGTCGCTGGT
GGACCGCAACGGACGCTACTGGGTTGTTTTGGATTTTGGCGGATTTGGGA
GATTGATGCTGGTCACTTTTCCTTCTGCAGGTAAGGAGTAAGGGTCAATC
CTCGCGTCGTCCGCCTTTTTTCGAGTGCAAGTTCAAACCGCCGATTCCCG
CAATAAGACAAAAACTTATCATGTACAAGCTGGGCCAGCCAAAAAACTAG
TCTGACGGTTTTGAGGCTGTGCCCCCCGTCAATTTAACGAATTTTGTGGT
GAAATGTTGACGTCTTGTTCTTCACTAACTTGCCAACACATTCAATGGCC
TTCATTTTTTAATGTTTTTTCGAAATTGTGGTCTATCCAAGGGTTCGAGA
AAATGCAGAGCCGGCCGTAACTGCCTTGGAAAAAAAACAAATGAGCTTCA
CTCAATAAATTTTAACAAACGTTCCAAATATGAAGTTAACATTTTAGGTC
AAAATTCGCAAAACTGCGCGGGGCATTGCAGATTGTTGTGGGACCCTTGT
GGGAAATATTAATTGGGCGTAAAATTTTTGCTGTTCTTCCCCCACAAGGA
AGCAGACTACCGCAGTACAAGTACGTGCAAACGAGCGAATGAAGATGTAA
GATGTACAGCATGGGACCTGCTGAATGACAAATGACATTACATCTCCAGT
GCAACCATGACTAGTTGACCGTCCGAAGCGAACCACCACTCTACTCGTAC
GTCGTACTCATCCTGTGACATAGTATCGAACACCACACCCGGTAGGCCTG
CCCATGCATTTCTATCCATTGTCCGCCCCTCCCTATCAATGGTGCTCACG
ATACGAGTCGTGCGACTGCTGATACTGGTTATTCTCCTACTCGTATTGCT
TGTCCATAAAGCCAGGCTCCATGTCAAGGATGTTGCAGTGAGCCTTGCAC
TTCTTCTTCATCTTCTCGATCATATATTTGGACTCGATGTCGCCACCTTC
TGAAGCTCCAAGTACGTCCAGCAGTAGTCTGGTGTGCGGCGCGCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21466:375..1621+

>mRNA_H-paniculata_contig21466.5649.1 ID=mRNA_H-paniculata_contig21466.5649.1|Name=mRNA_H-paniculata_contig21466.5649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig21466:375..1621+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGGTGGTGGTGATAAGTTTTTCAAGAAGGTTGACTGGTGGACTGC
AATATATGTGACTGGCTTCTTTGGGACGATTCATGATTTCCAGGAGTCGT
GCTCAGTTGTAGCGAGGCTCGACATCTTGCTCCTGAGTAGAGTTCTTGCT
GGAGAAGGGTCGCTGGTGGACCGCAACGGACGCTACTGGGTTGTTTTGGA
TTTTGGCGGATTTGGGAGATTGATGCTGGTCACTTTTCCTTCTGCAGATG
CGCGGTGGTGGTGATAAGTTTTTCAAGAAGGTTGACTGGTGGACTGCAAT
ATATGTGACTGGCTTCTTTGGGACGATTCATGATTTCCAGGAGTCGTGCT
CAGTTGTAGCGAGGCTCGACATCTTGCTCCTGAGTAGAGTTCTTGCTGGA
GAAGGGTCGCTGGTGGACCGCAACGGACGCTACTGGGTTGTTTTGGATTT
TGGCGGATTTGGGAGATTGATGCTGGTCACTTTTCCTTCTGCAGGCTCCA
TGTCAAGGATGTTGCAGTGAGCTCCATGTCAAGGATGTTGCAGTGA
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