mRNA_H-paniculata_contig21433.5642.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21433.5642.1
Unique NamemRNA_H-paniculata_contig21433.5642.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21433.5642.1 vs. uniprot
Match: D7FJ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ51_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.250e-21
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 ARVPPLLCLFLEDMVTLACAASTASTDDSELLELQEAGVMMLTEVARTFAQV 156
            A+VP LLCL+LED+VTLACAA+TASTDDSELLELQEAGVMMLTEVARTFAQV
Sbjct:  455 AQVPALLCLYLEDLVTLACAAATASTDDSELLELQEAGVMMLTEVARTFAQV 506
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BLAST of mRNA_H-paniculata_contig21433.5642.1 vs. uniprot
Match: A0A6H5K5D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.300e-20
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 ARVPPLLCLFLEDMVTLACAASTASTDDSELLELQEAGVMMLTEVARTFAQV 156
            A+VP LLCL+LED+VTLACAA+TASTDDSELLELQEAGVMMLT VARTFAQV
Sbjct:   30 AQVPALLCLYLEDLVTLACAAATASTDDSELLELQEAGVMMLTVVARTFAQV 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21433.5642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ51_ECTSI8.250e-2190.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5D2_9PHAE7.300e-2088.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21433contigH-paniculata_contig21433:3806..3970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.0947537-CDS-H-paniculata_contig21433:3805..39701622929578.0947537-CDS-H-paniculata_contig21433:3805..3970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21433 3806..3970 -
1691480921.677405-CDS-H-paniculata_contig21433:3805..39701691480921.677405-CDS-H-paniculata_contig21433:3805..3970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21433 3806..3970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21433.5642.1prot_H-paniculata_contig21433.5642.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21433 3806..3970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21433.5642.1

>prot_H-paniculata_contig21433.5642.1 ID=prot_H-paniculata_contig21433.5642.1|Name=mRNA_H-paniculata_contig21433.5642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
ARVPPLLCLFLEDMVTLACAASTASTDDSELLELQEAGVMMLTEVARTFA
QVRK*
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mRNA from alignment at H-paniculata_contig21433:3806..3970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21433.5642.1 ID=mRNA_H-paniculata_contig21433.5642.1|Name=mRNA_H-paniculata_contig21433.5642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig21433:3806..3970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACGCGTGCCTCCGCTGCTGTGTCTTTTCCTGGAAGACATGGTCACGTT
AGCGTGCGCGGCTTCGACTGCGTCAACTGATGATAGTGAGCTGCTCGAGT
TACAGGAAGCGGGGGTCATGATGCTCACGGAAGTGGCCAGGACGTTTGCT
CAGGTGAGGAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21433:3806..3970-

>mRNA_H-paniculata_contig21433.5642.1 ID=mRNA_H-paniculata_contig21433.5642.1|Name=mRNA_H-paniculata_contig21433.5642.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig21433:3806..3970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACGCGTGCCTCCGCTGCTGTGTCTTTTCCTGGAAGACATGGTCACGTT
AGCGTGCGCGGCTTCGACTGCGTCAACTGATGATAGTGAGCTGCTCGAGT
TACAGGAAGCGGGGGTCATGATGCTCACGGAAGTGGCCAGGACGTTTGCT
CAGGTGAGGAAGTAGGCACGCGTGCCTCCGCTGCTGTGTCTTTTCCTGGA
AGACATGGTCACGTTAGCGTGCGCGGCTTCGACTGCGTCAACTGATGATA
GTGAGCTGCTCGAGTTACAGGAAGCGGGGGTCATGATGCTCACGGAAGTG
GCCAGGACGTTTGCTCAGGTGAGGAAGTAG
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