mRNA_H-paniculata_contig2141.5633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2141.5633.1
Unique NamemRNA_H-paniculata_contig2141.5633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2141.5633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2141contigH-paniculata_contig2141:4054..11282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size718
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2141.5633.1prot_H-paniculata_contig2141.5633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2141 4054..4545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.118109-CDS-H-paniculata_contig2141:4053..45451622929577.118109-CDS-H-paniculata_contig2141:4053..4545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2141 4054..4545 -
1691480921.273929-CDS-H-paniculata_contig2141:4053..45451691480921.273929-CDS-H-paniculata_contig2141:4053..4545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2141 4054..4545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.1301196-UTR-H-paniculata_contig2141:4545..46391622929577.1301196-UTR-H-paniculata_contig2141:4545..4639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2141 4546..4639 -
1691480921.2828743-UTR-H-paniculata_contig2141:4545..46391691480921.2828743-UTR-H-paniculata_contig2141:4545..4639Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2141 4546..4639 -
1622929577.1399322-UTR-H-paniculata_contig2141:11152..112821622929577.1399322-UTR-H-paniculata_contig2141:11152..11282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2141 11153..11282 -
1691480921.291634-UTR-H-paniculata_contig2141:11152..112821691480921.291634-UTR-H-paniculata_contig2141:11152..11282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2141 11153..11282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2141.5633.1

>prot_H-paniculata_contig2141.5633.1 ID=prot_H-paniculata_contig2141.5633.1|Name=mRNA_H-paniculata_contig2141.5633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MGNKLSSSDTRPPTPAPEAPPLSTNTTATHAWRSGNELSTAHVAPAAAST
AASSAAVPAPQQPERASHIQRGTSSSVLTGAGGAGAASTPRRTTPRSAAS
STRRWLRSRSMGSSSSSASPAGGVGVSDSRDGLVGAAAAATGGISFISGS
SGGGGGGGGGGGSG
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mRNA from alignment at H-paniculata_contig2141:4054..11282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2141.5633.1 ID=mRNA_H-paniculata_contig2141.5633.1|Name=mRNA_H-paniculata_contig2141.5633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7229bp|location=Sequence derived from alignment at H-paniculata_contig2141:4054..11282- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAATCCGAGAGAAATAGCACGGTAGTGCTCAAGCTCTTCATCTATCGA
GGCTAGGCAGAGGAGAGCAGACGGGATCTACAAGAACTTCACCTTCAATC
TCTATCTCTGCTTCTGCTTCATCTCATACTGTAAGTTTCCCAAACTATCA
CTGCTATTGTCGGTCAGCCTTGCCGGTTGGTGCCTGCTTCTGAAATCAAC
CTGCTCCTGTGTGTAACACTGTCTGCATACAGGTAATAATTTATGGGCAA
ATCATCCTGCCCCAAGGGATGACGATTTGCATCTCAACATGCTGCACGGC
GTTGCCTGCAGCACACCTTGTACTCTGCGGCTTCACCTTGTAATTTACTA
GACAAACCATGATGGTAACAAAAGAGGAGAGGAAGGACCTATTGGCTGTG
CTGTGTACAGTCCGATATTGAGGGGTTGCATTTTCCTCTGGCTGGCTTTC
TAATGCTGAAATATTTATTGTCAGTTGTAAAATTCGCAGCTTCTTTCCGG
AAAGCAATGCGTGCGCACACCCTCATGTAGTGCAAAACCTGTTGTGTGCA
AAATGCATGCAGGTGCTGGTGAGGAGAGAGCATTTATGCTTTTTATGTTG
CTGCCGCAATCTCTGCTGCTTTCAGGTTTGTAGAAAAAACGTGCTTCGAA
AGGTACTTGCTATGTTCGCGACGAGTTTTTCAACTTGCAACGGTATCTAC
GTTATTTTTACGGATACGTTTAGTTTTGTACTATGGTGGAGATGAAGGTT
TTAAGTGTTTTTTACATGCACTACTCTATATACAATAGAAGAGATAAGTT
GCAGCCTGGCTGCTCGTTACACAAACGGACGGTGTAGAGTAAAGTGATGT
AAAGATATATTTATATTTTGCCAATCTTCAAGTACTGCCCGTTCTCCCTC
AAGTTCTATGTAATTTTTTTGGGGATGCATCACCAGGCACCATTGCACCC
AAAATTCCGCAACTGATGCGGTGATCACTTTTGGGGGCGAGGGCAAGGGC
ACCATTGGATGGATCACTTCTTGACCAATATTACTTTCGCAGCGCACGTG
TCTGAAGAACTGTCCATATGTAGCGTTCATGTGCGAGACCTACATCAACT
ACAAATCACTCAGGGTCGCACTTTTGGTTCTGTCGATGTTCAGAGATCTT
TTCATTTCTCGATGAAAATGGTGGTAAACACGTATAAATTTTCAAAATAA
TTAAAAGTCATCTCCGTGCAATCATTCCGTGTTGTGCGCTCGATCCATGC
ACAAAAAACTCCTCATTCGTTGCACTGCCCTTGGCAAGGAAGATATTGTT
GACCCAGTAAAGATATATCGTACAGTATTGAACAATTGCTCCAAAAGTAC
GGCGACAACGACGTCACACCTGCACCCGCGATTCTGTAGGGGTCTAAATT
TACAGACAATAGACTTCCATGTGTACGGCGTTGAAATTTATCGAATACGG
TATATTAAAGAAATGTATACGTAAACGTGTTATGTATTTGATGCATATGT
TATCAAATCGACCCACTATGGTTTTATTATTATTATTATTACCAATATTC
ACACATTAGCCTGAACCCTCAGACCCGCGGGCGCAGGGTGATTGGGAATT
TGGTGAAATTGCAATAGTATACCATAACAATAGAGCGAAAAATAGCGACT
AGAACCCTGAAAGAAAACAGGGGTAAAAAATCGCTGGAAAGGTAAATAAA
CACACGAAACATGAGTAGTAAGACCGTGTATTATCGAAGTTCCAAAAAAT
CGAAATTTATAAATGAGAAATTTCTTCAACTCCTTTGATGATTTTTTGCG
AGGAAGATCGTCCGAAGAGGCACAGACTAATAAAAGAAGCTGAAGAATTT
TCTCATTTATGTATTTCGATTTTTTGGATCTCGTTAATACACGGTCTTAT
GGAAGACCGATCTGTGCCTCTGAGAGGAGATCGAAATCGAACAGTGAGAA
ATTTCTTCAGTCGCTGTGATGAGTTTGTGCGAGGAAGATCGTCCGAGGAG
GCACAGACAAATAGCAGAAGCTGAAGAAAATTCTCATTTATAAATTTAGA
TTTTTTGGAGCTTGTTAATACACGGTCCAAAGAGGAAATCAAGGCAAAGC
AAAAGACAAAGCAAATAATATTTCCGAATGCTGACGTATGACTCAATTGT
CGTACGGGAACACTATGCACTTGATTACGGCAGACTTTCTGTCGGTGTTG
TGCACCTACGTACAGCTTGCCATGATCAAGTGCAGAGTGTTCACATACCA
TAATCAGCTCACGGACAGCCAGAGATTACCACCGTTCTGATCCTAAACTG
AAGTCAAAAACCTTTCGTACCGTATCGAATCCGGTCAGCGCTGATTTGAC
CCAAAATATTCGTTGATGGGACGCTGGATACTTGCAAAGGAATGGCAGTG
CTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTG
CTGTGCTGTGCTGTGCTGTGCTGTGCTGTCATCTCTCCGTGCCACAGGGT
CACATGAACATTATACACAGTTTGTTCTTTGCGTGTCGGAGGAAAATTGT
ATTAAGGCATACTATCTCACCCTGTATCATAATCATGCTATACTGGAGGG
ATACATTCGATACTGATTTGTATTAGGGTTTCGTGTTCCGAGGAGCGGAA
AAACAAATATCCGGGAGGGGGATCAAATTTCCGAATATCTTGCTCGGATC
TTACTGAGCAAACAAGTGGCTTCTGGTGATGTTGAGGTATGTACCGAACA
TGACCGCCAACCGTTACAAATAATCTCGTCGACTACGTTGCAAAAACCAG
AGGACTTAAACACCACAACCACACATACTCCCAGAAAAACATGAACAGGA
AGACAGAGTACATGCGCACGAGCTTTGATGATAGAGCTTGCTTTGCTGAA
CACGCTAGCCTTTGACGCGAATCCATTCTGTGTTTGGGGAGCTACAGCAC
TTCATGTCGAGTTGCATTTACAATGGGTGCCGTTGTTGGCCATTTGTCCA
TGTCTGGCCTATTCCAGTGCGCACGACAAACACCTGTTCTTCAAATCTAT
ACTATTTCTACCCAATCTATGTACATGATGTTGTGCCCGGGGAAAGTAAA
GATACTACTCCCACGACGAGCAGTGCTACACTCCCTTGTCATCTGTTCGC
AAGTCACCGCCTTCGCCTGACTCGTGGGGACCTTGGTTGTGCCCGGTCGC
TACGTGTTTCATTCACAAGCACATTCGATTTCATGCTGGCGTCCACACGA
CAAGATGTTGAGGCCGTATCGTGTAAACAGGAGTGTGGGATGAAAAAAGT
AATCAAATTATTTCCCATATAAAACAAGTGCGCTTTTGATTGCCCCGAGC
TTCCACGGCACACAACGAATCACTACCTTTCATGTTGGAACAAAAGTTGG
CGTTAGTTTGGGTGGAAAATAAAAACTAACGTGAACTAGCGCGCATGCAT
AGTTGTGCCATAGCGATAGAAGAGTGAGTCGAAACTGGAGCACGAAGGGT
CGTCGATGCGCACCCCACTGCCAGAGAGCCACGTTACTCCGGCACATCAA
CGTATAGGTTGAGTCGCACCTGCTGATTAGTTGAGTATCGTGTATTTTTC
GTTGGGTTGAATTTGTTACAAACTGAGTGAGAATGGATACTTTTCGTGCG
CGCTTGCTGTATGAAGCAGAGACAACCCAGAAATTGTGAAAAATGCCCGT
TTCTAGTTTCCAGCTTCAGAACAAGTGCCCCAGCTCCTCGAACACTGAAG
GAAATCTTGTGAAACAACGCCTGTTGTGTGCCGCTGATAGAGGACTAGCG
CGTACCTAATGCGCATGTCCTGAGGCTCTCTGTCTTTGCCTCAACAGGCG
TGGAAACAGATGGGACGGGGAACCATGCAGGCCTTAAAAACCCGGATCTT
TTTGGGAATAAAAATGTCCACATTTTTATCACTTTTTCTTGTTTTTCTGG
ACCCTACAAATCAAGATAAATAGGACGAGTACGTAAAATGAAACAACTCG
CTTCTTCGACTCGTTTTTTTTCTTTTTCTTAGTAACTACTTCACTTCATA
CAACCATTTCTTGTCTTGGCGTATCTTACTTTCTTATTTTTTCCAACAGT
GGGCTTTTGTAGCGCAGAAATCGTCAAATTTTGTACCAAAAAGAGTGGAA
TTAGAAGGAAAATACTGTCCGCATGTGTGGGTAGAGGGCATTTTGTTCGC
CCACTTGTTGTAGCTCCCAATTTTTACGGCTGCCAGTTCTGGCCAGTTTT
GCCTCTTGTGCTCAGTTGCACTCTTTTTTCTCAGAGATAACCGAATATAC
ACCGATTTTCGGTGTATATTCGTCCATCTCTAGAATAAATTGCAAGTGGG
CAAAAGCGACGAGAATGGTGAGAATAAAAAATTTGCAGCTTGCGAGCTGC
AACAAGTAAGTGGGCGAACAAAATACCCTCTACCCAAACATTCGACCAGT
ACTTTCCCACCAACTGCATTCATTTTGGTCCAAATTTCGGCGAGTTCTGC
GCTGTCGCAAGTCCACCTGGGCAAAAAAAAATCCAGCAGAAAACGCCACT
AGTAACGTGGATATTTTTCGAATTATCCTTGAAGATTTACATGCGATTGG
TGTTAAAATTCAAGAATTATTGAGCGTTCCAAAGGAGTGCCGAGAAGTGG
ATCTGGATTCACAAAAATAGATCTGCGATCGATTGCGTCCCGACATGTGA
TGTAATCTATTTTCTTTAAGTGAAGAAAAATGTTTCAAAAAGAGATCTTT
GAGGGCTCCGTCCCGAAAAGGGTTCATGAGCTTTTTGTAGTAGTAGTAGT
AGTACAAGTACTTTGTTTTCGCTTGGGCAGCAAACTGCGCCGTTAGAGGC
AGTTGTTATCAGGGCATTCTTCTCCGTTTTTTGTTTCTGGGGGGTCACGT
TAGTCCGGGAAAAAACACGCCAGAGAAACAAGTGTGCCAGTTATGGGCAG
GCCCCAAAAGAAAGAACATCCAGGAATAAATCGGACCGTGGAGTATGGGA
AGATATAGATATATGTATGCCATGCATGCTCCCCCACCAGGTGCCAAGGT
TCGCCGACTGTTCCTTACTGTTGCAGGCGGGCGTTCGCCTAGGCTTGTCC
TTTTCGCGGTAATGTACCGCTTCTGCGAAGCGTGCTTCGAGCTCTGAGCA
GGATGGATTATCATCGTAGCCGTCGGCATCCGTGACAATGGTTGCAGCAT
AGGACATCCTTGCAGCAGTAGCAGTTGGATATTTTCATCGCTGCCCAGCG
GTGGGGATCTCCTTCAAGGGCAAATCGCATTTTCGTACAAAACGCAATGC
ACAAAAACGAGCACAGCCTACAAGCACTGCGTGGAACCACCCGTTACTCG
TCACTGGGCAGAGGTTGCGCCAAAGCTGCAAGACAAGTTTTCGGGCCCCC
GTATCAGAGTTCCGCTCGTTGAAGTACGTGGTGTCCGAACTCGGAGGAGT
TGCTGGTCGGTGGTGACCTTCATCGCGAGCAGAGGTGGGTGCTCTGCTGT
TTTGCTGGAGATGGCATACGAAGCAGCGGCTGCTCTGTCTGCCAGCGTTG
TCGCGAGTGGCACCACGCGACGGGACGCGCTTCTTGGAGCAGTTCGTAGC
GAAGCTGCTGCTGGCAGTCGCAGCAGCGTGTCTTTTTGTAGCGTCACCAT
CGCCCATCATTGCATCGCTTATGCCTGGTAATGGAGACTGCCGTCAGTTG
CTCAGAGGTGGTCCCCGCGTGCTTGGTCACAACCAGCATAAGCGACGAGG
AAGGCCTCCTAGAGCTGTCCGTGGCTATGCTGTATGCTGGTGCTGGAGTC
GCAGCGTTGTCTCGTATGCCATCTTGACGGCACAGCGGGAGATGGGCTTT
TTATCAATTTTGAGATGAAAAAAAAGAGATCGCGAGATCCCCAGTTCTGG
CACTTTGTACTGCTATCGCGGAACCTATGACTTGTGGTATAAATATTCAC
TCTTGCTGCATCCAAGATGTGGATGTATCCAGCAAACCGTGCACCAAACT
TGGTGAAACTACAGCATGCACAAGTAACCGCTCCCATTGACTGGCGGGCA
CATACATTGGCATTATTATGGCGTCAACCTGGATATCAAAATGGAACGCA
GGACGAGGCAATCCCCCAAACTCAATCTGTTGCTAGTTAAGATAAATCCG
GGAACCGAAGACGAGTCGACAGGCCACGAAGGTTTTGTAAGTCACATGTA
TATCTATCTGTGTCAGGTGTTCATTCATAGGCTACGGTGTCTATATTCTC
CCACCCCCTCCCCCGCCCGAAATCGCGGCGTTGTGTAAATTCCCACTTTC
AGAAGCGATTTCATCGTAGTTCCCATGTGGGCAGTGGGCGGCTGAGGCTT
CTGTCCCATCTTGTTTGTACGAGAACTCGCCTCCCGCAGTGTCGTAGTCG
ATAACCCCGATTGCCGGTGCACCGTGCTCAGACACAGCCTCTCCTCCCCC
CCCCCAAAATACTTAATCCTGCAGGGCTACCGATCAGTAACGGCGGTGGC
ATTAAGATTCTCATCCAACCGATGACGACAGAGGCAACACAGGTTTTTTT
TCGTTCAAACACGCATCGCCGCTTTTTCACTCGAAATCTAAAATCTTCTT
TCTATGTGTGTTTTATGGTGTCGCTGCCGGTTTTTGTTTGCAGCCTCAAT
TATTCTCCGCTCCTCTGGCAGGTGGGCCTTCAATATTTCTTGGCAGGCAG
GGCTTGCGCTATATATATATACGCGCACACACACACTATGGGGAACAAGC
TGAGCTCGTCCGACACTCGACCTCCGACGCCCGCACCCGAGGCTCCTCCT
CTCAGCACTAACACAACTGCGACCCACGCTTGGCGTAGCGGCAACGAGCT
CTCAACCGCGCACGTTGCCCCTGCCGCCGCCTCCACCGCAGCTTCATCGG
CAGCAGTCCCAGCACCGCAGCAACCCGAGCGAGCGTCGCATATCCAGCGG
GGGACCTCGTCGAGCGTCTTGACGGGAGCGGGAGGGGCGGGGGCAGCTTC
GACCCCGAGGCGCACCACGCCGAGGTCGGCAGCATCTTCCACGCGACGAT
GGCTCCGCTCTAGGTCAATGGGCAGCAGTTCCAGCTCCGCCTCACCAGCA
GGAGGCGTCGGCGTCAGTGACAGTAGGGATGGATTGGTCGGTGCCGCCGC
CGCGGCTACGGGGGGGATTTCGTTTATCAGCGGCAGTAGCGGCGGCGGCG
GCGGCGGCGGCGGTGGGGGGGGAAGTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2141:4054..11282-

>mRNA_H-paniculata_contig2141.5633.1 ID=mRNA_H-paniculata_contig2141.5633.1|Name=mRNA_H-paniculata_contig2141.5633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig2141:4054..11282- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAACAAGCTGAGCTCGTCCGACACTCGACCTCCGACGCCCGCACC
CGAGGCTCCTCCTCTCAGCACTAACACAACTGCGACCCACGCTTGGCGTA
GCGGCAACGAGCTCTCAACCGCGCACGTTGCCCCTGCCGCCGCCTCCACC
GCAGCTTCATCGGCAGCAGTCCCAGCACCGCAGCAACCCGAGCGAGCGTC
GCATATCCAGCGGGGGACCTCGTCGAGCGTCTTGACGGGAGCGGGAGGGG
CGGGGGCAGCTTCGACCCCGAGGCGCACCACGCCGAGGTCGGCAGCATCT
TCCACGCGACGATGGCTCCGCTCTAGGTCAATGGGCAGCAGTTCCAGCTC
CGCCTCACCAGCAGGAGGCGTCGGCGTCAGTGACAGTAGGGATGGATTGG
TCGGTGCCGCCGCCGCGGCTACGGGGGGGATTTCGTTTATCAGCGGCAGT
AGCGGCGGCGGCGGCGGCGGCGGCGGTGGGGGGGGAAGTGGCATGGGGAA
CAAGCTGAGCTCGTCCGACACTCGACCTCCGACGCCCGCACCCGAGGCTC
CTCCTCTCAGCACTAACACAACTGCGACCCACGCTTGGCGTAGCGGCAAC
GAGCTCTCAACCGCGCACGTTGCCCCTGCCGCCGCCTCCACCGCAGCTTC
ATCGGCAGCAGTCCCAGCACCGCAGCAACCCGAGCGAGCGTCGCATATCC
AGCGGGGGACCTCGTCGAGCGTCTTGACGGGAGCGGGAGGGGCGGGGGCA
GCTTCGACCCCGAGGCGCACCACGCCGAGGTCGGCAGCATCTTCCACGCG
ACGATGGCTCCGCTCTAGGTCAATGGGCAGCAGTTCCAGCTCCGCCTCAC
CAGCAGGAGGCGTCGGCGTCAGTGACAGTAGGGATGGATTGGTCGGTGCC
GCCGCCGCGGCTACGGGGGGGATTTCGTTTATCAGCGGCAGTAGCGGCGG
CGGCGGCGGCGGCGGCGGTGGGGGGGGAAGTGGC
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