mRNA_H-paniculata_contig21381.5622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.560e-18 Identity = 88/290 (30.34%), Postives = 139/290 (47.93%), Query Frame = 3
Query: 138 GKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT-----ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
GKS +S +L+ +ER FKR+R G++ TRA ++ R +R + R W++R+ ++ + F + S LTS S N I + A+ E + LP + +G+ A+ DAR E +V+A Q +L + V + E RD+ L AK +D T A ++ +V + + E+SL+R+ A V A Y +ST L W+R FR GG K D RGVHER+WI+SEEDL+ +++ ++ QKR+
Sbjct: 120 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIGS---------NEQHIRRIEDAMAEQDLASLLAPLPPSPIEGN---ADVDARACTEGEDNQSKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDESYTTIPAVKAAEAKRFEVLIEASRRRHESSLLRIA----ARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRL 392
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: D8LIV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV1_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 1.390e-15 Identity = 95/332 (28.61%), Postives = 147/332 (44.28%), Query Frame = 3
Query: 18 RTSWEQGYKGTQVDLSPPSVQQRSSTSASTAGSAAAKLPEGKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASM-LVNDRGKRCLTRAWTRRQEEVAKKFAAQ--------KSLTSCCASPKRKR*ERGNMNLIFWLRKAIMED------VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT--ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVN---YKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
R SWE +G S + S +T LP GKS +S L++SQ+ FKR+R G++ TRA + R +R + R W+RR+ ++ K F + K LT R N + L A+ E+ + P +DG+ +A A G VS Q +L + +V E RD +L +A + LA + T + + + K + EASL+R ++L + A + Y ST L W+R FRK GG + D RGVHE +WI+SEEDL+ +L +++Q+R+
Sbjct: 66 RLSWEASQRGKPCHPSKEDIDSASVAVDTT-------LPAGKSPNSIGILNSSQQPRFKRQRLSGSHATRAQFATQQHMFTSRQERSMKRGWSRRETKLRKDFDKRGGYLRGRIKDLTEKT---------RTNTQHVQRLETALGENKLASLLIPVPPSPVEDGE----DAGAGLKGNVS---------EKQINRLWQQGYCTLKVLVAELARDT---KQLVLTVEANEVLAGSKGVTDAAVREGEAKRFELLNEASLVRYDASLLRIAANVVQTGSHPYAVSTILRWLRDFRKQGG-FRRDSRGVHEPDWIMSEEDLKGQLLTWMRTQQRL 364
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.290e-15 Identity = 84/283 (29.68%), Postives = 134/283 (47.35%), Query Frame = 3
Query: 162 RLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT------ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
+L+ +ER FKR+R G++ TRA ++ R +R + R W++RQ + + F + S LTS S N I + +A+ E + LP + +G+ A+ DAR E +V+A Q +L + V + E RD+ L AK +D T A +E ++E + E+SL+R+ A V A Y +ST L W+R FR GG K D R VHER+WI+S+EDL+ +++ +++QKR+
Sbjct: 13 KLNAVEERKFKRQRLAGSDATRAGFTQESTLSRRERRSVARGWSKRQGKFRRDFDKRGSYLGNRIYELTSQIES---------NEQHIRRIEEAMAEQDLASLLAPLPPSPIEGN---ADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKSLSDESYTTIPAVKAAEAKRFELLNEAS-RRRHESSLLRIA----ARVNSAGSRVYAASTVLGWLRDFRGHGG-FKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRL 277
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 9.460e-15 Identity = 81/277 (29.24%), Postives = 129/277 (46.57%), Query Frame = 3
Query: 141 KSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMEDVTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAI---NQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
KS +S +L+ +ER FKR+R G++ T A ++ R + + R W+ R+ ++ + F + S N I+ I + + + +EEA A+ A ++P LPP + + E + A+ NQ E E RD+ L AK +D + T + + K + EAS R ++L A V A Y +ST L W+R FR GG K D RGVHER+WI+SEEDL+ ++ +++QKR+
Sbjct: 119 KSRNSLGKLNAVEERKFKRQRLAGSDATSAGLTLDSTLSRRERYSVARGWSNREGKLRRDFDKRGSYLG---------------NRIYVQTSQIESNEQHIRR------IEEAMAEQDLASLLAP-LPPSPIE--RNEDVDARAYTEGEDNQYKEEERKRDLRQLELTQQAKSLSDE--SYMTIPAVKAAEAKRFELLIEASRPRHESSLLQIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRL 368
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.290e-14 Identity = 78/273 (28.57%), Postives = 129/273 (47.25%), Query Frame = 3
Query: 165 LSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMEDVTKLPQADDDGDVEEAEAD--ARFAGEVSPPLPPPQV---TAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT-----ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
L+ +ER FKR+R G++ TRA ++ R +R + R W++R+ + + F + S N I+ L I + + + +EEA A+ +R +SPP P ++ T + + R + V + E RD+ L AK +D T A ++ ++ + + E+SL R+ A V A Y +ST L W+R FR GG K D RGVHER+WI+SEEDL+ +++ +++QKR+
Sbjct: 11 LNAVEERKFKRQRLAGSDATRAGFTLETTLSRRERRSVARGWSKRKGRLRRDFDKRGSYLG---------------NRIYELTSQIESNEHHIRR------IEEAMAEQTSRVFSPLSPPRPSKEMQTWTHGRVPRARTTRHSALTVLKVERKRDLRQLELAQQAKSLSDESYTTIPAVKAAEAKRLELLNEALRRRHESSLWRIA----ARVNSAGLRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRL 257
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.690e-13 Identity = 93/339 (27.43%), Postives = 148/339 (43.66%), Query Frame = 3
Query: 138 GKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT------ATQSTWEKVDEKVWNYKKEASLIRL--------------------------------RFTML----------AMVAEAAEVN------YKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
GKS +S +L+ +ER FKR+R G++ TRA ++ R +R + R W++R+ ++ + F + S LTS S N I + +A+ E + LP + +G+ AE DAR E +V+A Q +L + V + E RD+ L AK +D T A +E ++E + E+SL+R+ RF +L +++ AA VN Y +ST L W+R FR GG K D RGVHER+WI+SEED + +++ +++QKR+
Sbjct: 110 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIES---------NEQHIRRIEEAMAEQDLASLLAPLPPSPIEGN---AEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKSLSDESYTTIPAVKAAEAKRFELLNEAS-RRRHESSLLRIAARVNSAGSRVYAASTILVXTTIPAVKAAEAKRFDLLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRL 434
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.370e-13 Identity = 84/281 (29.89%), Postives = 127/281 (45.20%), Query Frame = 3
Query: 126 KLPEGKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCL--TRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMEDVTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
KL + KS S +L+ +ER FKR+R G++ TRA ++ R +R + RR E+ A++ L S A LP + +G+ AE DAR E +V+A Q +L + V + E RD+ L AK +D + T + + K + EAS +R ++L A V A Y +ST L W+R FR GG K D RGVHER+WI+SEEDL+ +++ +++QKR+
Sbjct: 76 KLYKRKSRDSLGKLNAVEERNFKRQRLAGSDATRAGFTPESTLSRRERRSIESNEQHIRRIEDAM----AEQDLASLLAP---------------------------LPPSPIEGN---AEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDE--SYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGS-KRDSRGVHERDWIMSEEDLKDELVMWMRTQKRL 319
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.490e-12 Identity = 78/272 (28.68%), Postives = 124/272 (45.59%), Query Frame = 3
Query: 162 RLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLI---RLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
+L+ +ER FKR R G++ TRA ++ R + + R W++R+ ++ + F + S R E N I + A+ E + LP + +G+ A+ DAR E +V+A Q +L + V + E RD+ L AK +D T + + K + EAS R + A V A Y +ST L W+R R GG K D RGVHE +WI+SEEDL+ +++ +++QKR+
Sbjct: 111 KLNAVEERKFKRLRLAGSDATRAGFTLKSTLSRRERCLVARVWSKREGKLRRDFDKRGSYLGNRIYELTSRSE-SNEQHIRRIEAAMAEQDLASLLAPLPPSPIEGN---ADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKALSDEPYTTIPAV--KAAEAKRFELLNEASRRPHQSSRLRIAARVNSAGSRVYAASTILGWLRDLRGHGG-FKRDSRGVHEWDWIMSEEDLKDELIKWMRTQKRL 375
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.380e-10 Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 3
Query: 477 AEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
A+ DAR E +V+A Q +L + V + E RD+ L AK +D + T + + K + EAS +R ++L A V A Y +ST L W+R FR GG K D RGVHER+WI+SEEDL+ +++ +++QKR+
Sbjct: 290 ADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDE--SYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRL 448
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JTS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS6_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 6.240e-10 Identity = 70/238 (29.41%), Postives = 108/238 (45.38%), Query Frame = 3
Query: 261 RGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDML 926
R +R + R W++R+ ++ + F + S LTS S N I + A+ E + LP + +G+ AE DAR + +V+A Q +L + V + E RD+ L AK +D + T + + K + EAS +R ++L A V A Y +ST L W+R FR GG K D RGVHER+WI+SEEDL+ +++
Sbjct: 17 RERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIGS---------NEQHIRRIEDAMAEQDLASLLAPLPPSPIEGN---AEVDARACTDGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDE--SYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELI 239 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21381.5622.1 >prot_H-paniculata_contig21381.5622.1 ID=prot_H-paniculata_contig21381.5622.1|Name=mRNA_H-paniculata_contig21381.5622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp MLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDback to top mRNA from alignment at H-paniculata_contig21381:1370..2897+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21381.5622.1 ID=mRNA_H-paniculata_contig21381.5622.1|Name=mRNA_H-paniculata_contig21381.5622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1528bp|location=Sequence derived from alignment at H-paniculata_contig21381:1370..2897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21381:1370..2897+ >mRNA_H-paniculata_contig21381.5622.1 ID=mRNA_H-paniculata_contig21381.5622.1|Name=mRNA_H-paniculata_contig21381.5622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig21381:1370..2897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |