mRNA_H-paniculata_contig10872.561.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10872.561.1
Unique NamemRNA_H-paniculata_contig10872.561.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.210e-50
Identity = 118/300 (39.33%), Postives = 152/300 (50.67%), Query Frame = 1 
Query:  622 HEMYCPKTLIAHIIGKGGLTVRRISRESKTAIVIRPRNNGDG-DVVITGKPKDVSVAKHLVEELYREKGVNPDRMPXXXXXXXXXXXXXXXXXXXXXSTFHTTQGAGRARLGDPAPAGADAMINRLAQGKPPXXXXXXXXXXXXXXXXXXXXXXXXPALAGSKVVAVAGAWGGEMRALLKRAGCEKHLAMFQREMVDMEVLTMMRDKDFHKMGLNEGEMIRILNALKSPADED------SDDGLDPDDPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYK 1500
            H+M+CP  +   +IGK G TV ++ ++S+  IV++P  +  G DV+ITG P  V  AK LVEE YR KG  P  +P                           +GA RAR   P   G                                             VV   GAWGGE+R LL+ AGCE HL  F+ + +D EVL MM  +DF +MG+ EGE IRILNALK              DGLDPD P TCKICLDA+V+I+F+PC HQ TC RCGS+Y+ KPCI+CR ++ +V +V K
Sbjct:  767 HDMFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAA----------------RKAEGA-RARPAQPVTGGPXXXXXXXXX----------------------------------XVVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTEGEQIRILNALKGSGGXXXXXXXXDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIK 1015
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 2.920e-41
Identity = 126/322 (39.13%), Postives = 165/322 (51.24%), Query Frame = 1 
Query:  640 KTLIAHIIGKGGLTVRRISRESKTAIVIRPRNNGDG-DVVITGKPKDVSVAKH------------------LVEELYREK---------GVNPDRMPXXXXXXXXXXXXXXXXXXXXXSTFHTTQGAGRARLGDPAPAGADAMINRLAQGKPPXXXXXXXXXXXXXXXXXXXXXXXXPALAGSKVVAVAGAWGGEMRALLKRAGCEKHLAMFQREMVDMEVLTMMRDKDFHKMGLNEGEMIRILNALKSP-------ADEDSDDGLDPDDPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYK 1500
            + +   +IGK G TV ++ +ES+  IV++P  +  G DVVITG P  V V+K                   L   LY +          G     +                        F+ ++G     L  P+ A A A     A+ +P      XXXXXXXXXXXX              VV   GAWGGE+R LL+ AGCE HL  F+ + +D EVL MM  +DF +MG+  GE IRILNALK         +DEDSD GLDPD P TCKICLDA+V+I+F+PC H  TC RCGS+Y+ KPCI+CR ++ +V +V K
Sbjct:   51 QNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEGARARPAQPVTGXXXXXXXXXXXX--------------VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTVGEQIRILNALKGSGAGGVDDSDEDSD-GLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIK 357
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.180e-39
Identity = 132/351 (37.61%), Postives = 168/351 (47.86%), Query Frame = 1 
Query:  622 HEMYCPKTLIAHIIGKGGLTVRRISRESKTAIVIRPRNNGDG-DVVITGKPKDVSVAKHLVEELYREKGVNPDRMPXXXXXXXXXXXXXXXXXXXXXSTFHTTQGAGRARLGDPAPAGADAMINRLAQGKP-----PXXXXXXXXXXXXXXXXXXXXXXXXPALAGS----KVVAVAGAWGGEMRALLKRAGCEKHLAMFQREMVDMEVLTMMRDKDFHKMGLNEGEMIRILNALK-----------------------------------------------SPADEDSD-DGLDPDDPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYK 1500
            +EM+CP  +   +IG+GG TV R+ +ES+  IV++P  +  G DVVITG P+  + A+ LVE+ YR KG+ P  +P XXXXXXXXXXXXX               A RARL DP     +AMI  L +G+      P                        P + G              GGE+  LL+ A CE HL  F R+ +D EVL  M  +DF +MG+ E E  RIL+ALK                                                  DED D DGLDPD P TCKIC+DA+V I+F+PC HQ TC RCGS +  KPCIICR  +TR   V +
Sbjct:  733 YEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQ--ATARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGV---------APRARLPDPMMP-TEAMIGHLGRGRTMAVAGPAAAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXXVDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXXXXXXGRRENLAQRVVTVVRGTSGGVATPFEVEDDDVDEDXDSDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIR 1071
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.510e-20
Identity = 114/339 (33.63%), Postives = 150/339 (44.25%), Query Frame = 1 
Query:  622 HEMYCPKTLIAHIIGKGGLTVRRISRESKTAIVIRPRNNGDG-DVVITGKPKDVSVAKHLVEELYREKGVNPDRMPXXXXXXXXXXXXXXXXXXXXXSTFHTTQGAGRARLGDPAPAGADAMINRLAQGKP--------------PXXXXXXXXXXXXXXXXXXXXXXXXPALAGSKVVAVAGAWGGEMRALLKRAGCEKHLAMFQREMVDMEVLTMMRDKDFHKMGLNEGEMIRILNALKSPAD--------------------------------------------EDS-----DDGLDPDDPHTCKICLDAIV-------EIMFVPCGHQVTCER 1425
            +EM+CP  +   +IG+GG TV R+ +ES+  IV++   +  G DVVITG P+ V   + LVE+ YR KG+ P  +    XXXXXXXXXXXXX             A RARL DP     +AMI  L +G+               P             XXXXXX    X        V V+G    E+  LL+ A CE HL  F+R+ +D EVL  M  ++F +MG+ E E  RI++ALK   D                                            ED       DGLDPD P TCKIC+DA+V        ++  P G +    R
Sbjct:  587 YEMFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGV-------APRARLPDPMMP-TEAMIGHLGRGRTMAGAGPAAAVGMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGV---ELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTEAEQGRIMSALKHAGDGXXXXXXXXXXXXXXXXXXRENSAQRVAAVVRGASGVMATPVEVEDXXXXXXSDGLDPDHPDTCKICMDALVGLRLGMSRVLAAPAGREACVSR 914
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A1A8J025_NOTKU (Baculoviral IAP repeat-containing 7 (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8J025_NOTKU)

HSP 1 Score: 60.5 bits (145), Expect = 5.240e-8
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query: 1351 TCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYKS 1503
            TCK+C+D +V I+F+PCGH V CE C +S  H  C ICR +I   V+ + S
Sbjct:   18 TCKVCMDKLVSIVFIPCGHLVVCEDCAASLRH--CPICRAVIRGSVRAFMS 66
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A0D2WTC9_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WTC9_CAPO3)

HSP 1 Score: 66.6 bits (161), Expect = 1.150e-7
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query: 1342 DPHTCKICLDAIVEIMFVPCGHQVTCE--RCGSSYDHKPCIICRVMITRVVKVYKS 1503
            D  TC +C+DA ++  FVPCGH V C+   C SS   KPC +CR ++T++ ++YKS
Sbjct:  471 DQETCIVCMDAAIQFAFVPCGHYVCCDINGCASSLVDKPCPLCRALVTKIQRIYKS 526
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A816TRX1_9BILA (Hypothetical protein n=6 Tax=Rotaria TaxID=231623 RepID=A0A816TRX1_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 8.240e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query: 1342 DPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYKS 1503
            D   CKIC+DAIV+ +F+ CGH VTC +CG       C ICR  I RVV+V+KS
Sbjct:  310 DSELCKICMDAIVDCVFLDCGHMVTCVKCGKLLAE--CPICRSNIVRVVRVFKS 361
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A817ETY9_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817ETY9_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 9.340e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query: 1342 DPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYKS 1503
            D   CKIC+DAIV+ +F+ CGH VTC +CG       C ICR  I RVV+V+KS
Sbjct:  335 DSELCKICMDAIVDCVFLDCGHMVTCVKCGKLLAE--CPICRSNIVRVVRVFKS 386
[Close]
BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A818HTJ4_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818HTJ4_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 9.630e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query: 1342 DPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYKS 1503
            D   CKIC+DAIV+ +F+ CGH VTC +CG       C ICR  I RVV+V+KS
Sbjct:  342 DSELCKICMDAIVDCVFLDCGHMVTCVKCGKLLAE--CPICRSNIVRVVRVFKS 393
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BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Match: A0A814IF12_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A814IF12_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 9.800e-7
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query: 1342 DPHTCKICLDAIVEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYKS 1503
            D   CKIC+DAIV+ +F+ CGH VTC +CG       C ICR  I RVV+V+KS
Sbjct:  346 DSELCKICMDAIVDCVFLDCGHMVTCVKCGKLLAE--CPICRSNIVRVVRVFKS 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10872.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX21_ECTSI1.210e-5039.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKP4_9PHAE2.920e-4139.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8V2_9PHAE1.180e-3937.61RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FX18_ECTSI8.510e-2033.63KH domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A1A8J025_NOTKU5.240e-849.02Baculoviral IAP repeat-containing 7 (Fragment) n=1... [more]
A0A0D2WTC9_CAPO31.150e-746.43Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A816TRX1_9BILA8.240e-753.70Hypothetical protein n=6 Tax=Rotaria TaxID=231623 ... [more]
A0A817ETY9_9BILA9.340e-753.70Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 ... [more]
A0A818HTJ4_9BILA9.630e-753.70Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 ... [more]
A0A814IF12_9BILA9.800e-753.70Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10872contigH-paniculata_contig10872:2265..8279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue7.4e-09
Seed eggNOG ortholog192875.XP_004345686.1
KEGG koko:K07976,ko:K08731,ko:K12470,ko:K20705
KEGG Pathwayko01524,ko04144,ko04210,ko04215,ko04390,ko05161,ko05200,ko05210,map01524,map04144,map04210,map04215,map04390,map05161,map05200,map05210
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000793,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005819,GO:0005856,GO:0006323,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007610,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016477,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0031323,GO:0031326,GO:0032501,GO:0032504,GO:0036211,GO:0040008,GO:0040011,GO:0040014,GO:0040039,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043543,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048285,GO:0048609,GO:0048638,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051179,GO:0051225,GO:0051231,GO:0051233,GO:0051239,GO:0051252,GO:0051255,GO:0051256,GO:0051276,GO:0051674,GO:0060255,GO:0065007,GO:0070925,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090307,GO:0098813,GO:0140014,GO:1901564,GO:1902850,GO:1903047,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.negative regulation of transforming growth factor beta1 production
EggNOG OGsKOG1101@1,KOG1101@2759,KOG4348@1,KOG4348@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131
Exons5
Model size2388
Cds size879
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.6254544-UTR-H-paniculata_contig10872:2264..31461622928791.6254544-UTR-H-paniculata_contig10872:2264..3146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10872 2265..3146 -
1691480621.5451775-UTR-H-paniculata_contig10872:2264..31461691480621.5451775-UTR-H-paniculata_contig10872:2264..3146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10872 2265..3146 -
1622928791.7087913-UTR-H-paniculata_contig10872:7652..82791622928791.7087913-UTR-H-paniculata_contig10872:7652..8279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10872 7653..8279 -
1691480621.6074827-UTR-H-paniculata_contig10872:7652..82791691480621.6074827-UTR-H-paniculata_contig10872:7652..8279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10872 7653..8279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.6360223-CDS-H-paniculata_contig10872:3146..32691622928791.6360223-CDS-H-paniculata_contig10872:3146..3269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 3147..3269 -
1691480621.5552104-CDS-H-paniculata_contig10872:3146..32691691480621.5552104-CDS-H-paniculata_contig10872:3146..3269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 3147..3269 -
1622928791.648518-CDS-H-paniculata_contig10872:5553..56701622928791.648518-CDS-H-paniculata_contig10872:5553..5670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 5554..5670 -
1691480621.5659344-CDS-H-paniculata_contig10872:5553..56701691480621.5659344-CDS-H-paniculata_contig10872:5553..5670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 5554..5670 -
1622928791.6637573-CDS-H-paniculata_contig10872:6168..66511622928791.6637573-CDS-H-paniculata_contig10872:6168..6651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 6169..6651 -
1691480621.5735617-CDS-H-paniculata_contig10872:6168..66511691480621.5735617-CDS-H-paniculata_contig10872:6168..6651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 6169..6651 -
1622928791.6764104-CDS-H-paniculata_contig10872:6911..70521622928791.6764104-CDS-H-paniculata_contig10872:6911..7052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 6912..7052 -
1691480621.585649-CDS-H-paniculata_contig10872:6911..70521691480621.585649-CDS-H-paniculata_contig10872:6911..7052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 6912..7052 -
1622928791.686594-CDS-H-paniculata_contig10872:7637..76521622928791.686594-CDS-H-paniculata_contig10872:7637..7652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 7638..7652 -
1691480621.597864-CDS-H-paniculata_contig10872:7637..76521691480621.597864-CDS-H-paniculata_contig10872:7637..7652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10872 7638..7652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10872.561.1prot_H-paniculata_contig10872.561.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10872 3147..7652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10872.561.1

>prot_H-paniculata_contig10872.561.1 ID=prot_H-paniculata_contig10872.561.1|Name=mRNA_H-paniculata_contig10872.561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp
MYCPKTLIAHIIGKGGLTVRRISRESKTAIVIRPRNNGDGDVVITGKPKD
VSVAKHLVEELYREKGVNPDRMPPPGGAATPAASAAAHAAAATTSTFHTT
QGAGRARLGDPAPAGADAMINRLAQGKPPAAATTATAAAPGGGGGKRMVA
AAAPALAGSKVVAVAGAWGGEMRALLKRAGCEKHLAMFQREMVDMEVLTM
MRDKDFHKMGLNEGEMIRILNALKSPADEDSDDGLDPDDPHTCKICLDAI
VEIMFVPCGHQVTCERCGSSYDHKPCIICRVMITRVVKVYKS*
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mRNA from alignment at H-paniculata_contig10872:2265..8279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10872.561.1 ID=mRNA_H-paniculata_contig10872.561.1|Name=mRNA_H-paniculata_contig10872.561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6015bp|location=Sequence derived from alignment at H-paniculata_contig10872:2265..8279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATACAAACTGTTCCGGAACGGCGGCCATCACCTTACATACTAATTGAT
GAGTACTAGGGTCGACGCTCGCTCGAGCAGAGTGGTGCGCGTACTACACC
AAGTTGAGGGAATCAACACATGGGGTTTAGTGAGTGAGAGTCCTACACTA
CCCTGAGCAAAGTCGTGCGAATGCTCGGGGTGCCTACCTCACATGACTGC
CGCGTGGCGGTCTAGTTCGACCCTCGGGTAATTGATACACGAACCAATCT
CGGGGTAAGTGTTGGGCAAAGGCTTTCCCCTCTCCTTCAAGGATATATAT
ATATATATACACATACATGAAATGAACGAGTAGGACATTAAAATCGGAAA
TAATTCATATCTTGGACAAAATTCATCGACCATCCTTGTGTTATACAGGG
AGGTACGTGATATATTATGGCCAGTCATTACTAGTGCATTTTTACAAAAT
TGTTCTTGTGTGCATGTGTGTGTCTGTGTGTGTTTTTGTTACCTGCTTGA
ACTAATTTCTGGTGCTGGACAGAAAAAGCTCGAGGAGAACAGGAGGTTTG
AAGCAGTACGCCCACAGGCAGCGGCCCCCGCCAAGCCGCCCGTGCCGAAG
AACACCTTTGCGAAGAACCTTCATGAGATGTACTGCCCCAAGGTCAGGGA
AGAAACAGGCCAACGTCAAGAATAACCTGCCTACAGGGCTGCGTCAACCC
TATTGACAGCATTCCATCTCGATATTGTGAAGACGAAATCTTCCCAGCGG
TACTTCACACAGTATCTGGTACGAGTTTTTAACACGCTTTGGGATGAGTA
TCACCGTGTTAGGAGTCGAGAAAAATTGCGTTTAGCAACGACAAGACAAG
AATAATAAATCAATCAGCAGGGGGTCAATCATCTACTGAGTATAGTACGG
CAGCCCCAGCTCAATGCAAGTAACTTGAGCATATGTTTCAATCGGCGGAT
TTTCTGGATCTTGGCTTCGATGGACCGATTTCCCCCGTTGACTTGGGCTA
CGTACCAATTACCGTGAGTGTGAATAATGGCAACCGTGGTATGATGAACG
ACAGAAAGCAAGCTTTCAATGAAAACAACGATGCTCCGTCCTTGTCTGGG
AAGGCGTTGCCCGTGTTCCGTCTTGTAATGTAATTTGAAAAGGTGTTCAG
TGCAAAACATGAATAGCCTGTCCCAAAACGACACCGCTACCTCGTCGTAA
CAATGGTTTGTTTCCTGTCTCCCCCAGACATTGATCGCTCACATTATCGG
GAAGGGTGGATTGACCGTCAGAAGGATATCAAGAGAAAGCAAGACGGCTA
TCGTCATCAGGCCAAGGAACAATGGAGATGGCGACGTTGTTATCACGGGC
AAGCCCAAAGACGTTTCGGTGAGTCTTGAGTTTTGTCGAATTCCTACGTC
ACCCCTCGCCCCCCCTCCCTCCTTTCTTCCTTTGCGTGCGGGTATTTGTT
TTCTTGCTTGAATGGTATTTGCTTTTTCTACCAACACTACATCTCCCCAC
CCACCGATTGAAATGTCCTCTTTCGCCCTATCCATCTTCTATAACTCCAT
CAACTCGCCCCGTGATAACCAAAGCTATACATATGGCACCTCCCCACAAC
CCCCGCAATATGCACCAACAAACAATAGGTTGCAAAACATTTGGTCGAAG
AGCTCTACCGAGAAAAGGGAGTGAACCCCGACAGGATGCCCCCGCCCGGC
GGCGCCGCTACCCCCGCCGCCTCCGCCGCTGCACACGCGGCAGCCGCGAC
CACTTCCACCTTCCACACCACACAGGGCGCCGGGCGGGCTCGACTCGGCG
ATCCCGCGCCAGCAGGCGCCGACGCCATGATCAACCGTTTGGCTCAAGGG
AAGCCGCCAGCGGCCGCGACAACGGCAACCGCCGCGGCGCCAGGAGGTGG
GGGCGGGAAACGCATGGTGGCTGCGGCTGCGCCCGCTCTTGCTGGCTCCA
AAGTGGTGGCGGTCGCGGGCGCTTGGGGCGGTGAGATGCGGGCACTGCTG
AAGCGGGCGGGGTGCGAGAAGCACTTAGCCATGTTCCAGCGAGAGATGGT
AGATATGGAGGTGCTGACGATGATGCGGGACAAGGACTTTCACAAGATGG
GGCTTAATGAGGTCTGTGTCTGTTTGCGTCGTGTACCTATACTAAAAGTG
CGTGCTTTGACATTGGGGGTTGTGGACGCGAAATCTTGTCGTGGTTGGTA
TAGCGTGGAGTGGAAGTGATGGAGCGAATCTCTTCTTTCACCTTGGTATG
GTTGAGTTTTTATCCTATTATATATGTACCGTGCTGTCGGTGGTGTCCTA
CTGAGAACATCTTCTTTTTGATCATACCAAGTGCCGATGGAGATCCCGAT
ATAGCAGTGCTAATGTATGCAGACGTGGTGGTTCTTTCTAATTTTTAGCG
GTTATTTTGTCACATTCTTTTTTTGCGATGGGTAAATCTGATGCAAGATC
TGTCCGTTGTCAGTGTTCCGTTGACCTTTGGTCACTCCGCTTTTGAAAAG
CTGATCAAATTAGATCGGATCAGATTTAGTGGCCATTTTCCCATTTTCAT
CTTTGGTTTGCTGTCTCGTTTAATTCGCTTTATTATGTATGCCTGCATGG
TATTCGCAGGGTGAGATGATCCGGATCTTGAACGCCCTCAAGTCTCCGGC
GGATGAGGATTCGGATGACGGTCTCGACCCGGATGACCCCCACACGTGCA
AGATTTGCCTGGATGCCATCGTTGAGGTATGCTGACTTTTTGGGGGGACA
GGGGCGATGTATGTTGTATCTTGTGTTCTAGTGGACTTGGAGATTTTGTT
ATATTTATTAGCAAAAATTGCTTTAACCAGTTTGAACTACAAGGTTCTTT
CATCTGGGTCGCGTGCGAAGCACCTCCCTCATGGGAGGATCGCCTGTGTG
CGCGAAACACTGGTTTTTGCGGCAAGCTGCCGATTTTGTGCCAGTATTTA
TTTGTGTGCTTGCCTTGTCCACATCTATTCGACAAATCAAATTAGCGCGT
ATTAACTCCCCGTGTGCCACGAAGCCACAAACTTTGTTTGCGGGAAAATC
TCGAGAGAGGAATACAGTCATGCTTGGTGCCTGTGGGGCTGCTATGTTCG
CATCGTTTCTTCTCCTGCGCCACATTGCGTAGTGGCACGACTTCTGCGGT
TTGTAAATTTGGAATAAGTGTTCTTGTCCCGAATTTTGCACCGCACCACC
CTCGGCACCACCGCCCAGAAGGTGGTGCCCGTACGTATGTCAATCGCTCC
ACACTACCACGTGGTTGTCATGTACGGTTATATGCGTCGCTCAGAGGTGC
GATGTTCCCACGCAGAAGGCAGGGCTCTATTCTATCTGCAGGACTTACTG
CTCTAGCGTGTTGGCGTGCAAAACGTTTTCCCTTGCCAGTTCAATCTGAG
TGTTAATTTGTGTCCATGACCATCAGAGTTTGAACGTTTTCATACCTGCA
GTGATTGGCACAGTTGTTTCGCTGTTGTTGTTTCCAGTTAGTGTCTAGTC
GCAAAACGTGGGGATGGCCAAGGGCATTTCGTGTTTTCCTGCCTCAAGAT
ACCACGAAGACGTTGGGATATGTGTAAGCTTAATCCCTGTGGACTGGTTT
TCCTTGCACTGCAACAGACAGAAGTAGGCAATTCGGCTCTTGACGGGTGA
TGTGTGATGACTTCACCATTGTGTCACGAAGGTACTTGTTCAAACGAAAT
CACCAGGAAATGTATTATGTCTAAAAAAAGTTGTAGTGTAGTGCTCGTAT
TCGACATTTGGCGACGTAGAGGCTGACATATGTTATTTTGGGTCTCGTAC
GGTCTGTCAGTCTTTGAAGCTCTACTGCCGATTGTGACGATTGTGACCGA
TTATTTCTGGCAGAGAACACTGTGTCGACCGGTTTTCTTGCAGTTGTCTC
TTTATTGTGACAGCAAAATCACCACAGAGGAAGGATCCTGTACAACAGCC
ATGTCACACAGTTCGTGATGTGTTGGTGATGGTACTGCGTTGCAGATGTG
CATGTTTGTATTATGTGGCATGCGGTGTAGCTCTGTGTTCAAAATCTCTC
CGAAAAAAAGGTTTTCAGCTTTTTGTCATAAGAGTTGTCAAACTGAGTGA
ATGTGATGGACTAAAGAAATGTCGGCAACATGTCCACAAGTAAGCCATAC
TGAAAGCCTACATAACTTCATCTAGACCCAAAAATAGTCGCTTTGCTTTT
CAACTAAAATACTCGGCTGTGGAAATCGGTGACCAATGTCGATGGAAGAA
CAACCACGGCGCTCTACTTCGTTGTCCGGTGTCCTATTTTTTCTCAGGCA
TTCTCGTTTCTGTTACGGGCTCGATGAATTTTCTTGTGCTTCTCTTGAAA
TTGTGTATTAGCGGTCAATAGGTCGTATCTTCGGCCATTTTGCGTCGCGG
ATTCCAGAGCTCTTCTCTCACTTGCTAGACGAAAGTGCGCAAGCGCGTCT
AAGGGCTTTCCGTGCACAGTGCGAATCGAGAGGAAGCTGCGAAGTTCATC
AGCCGGGGAGGCGTGGGTTGGTGCCTCCTGCGCAGTTATTTTCATCCCCT
GTGCGTTTCCACATTCAACGCATCATTCCCAAATCCAATGCGCACATTAC
CCGCTATTCAAGCGTTCTTGAGGTGTGCTATTGAAACACAGTCCTGTAGG
CCTTTCATGAGCTATAGCGCGTGGCAGTTTCGTTTTTCCTCACCTCTATG
ATCAACACAGGAAAAGGAAACACTTATTGCCTTTTCCTTTCACTCCCTTG
GTATTTCCGACACGGCCATTACTACTACACGATCGTGCATATTCCCACTT
GAAAAATTGCCCAGCAATACCTTGAGTTCGCCGGTGACCCCGTTGGCGTC
CTCCAAGGGGTTCGTCACCTGTCTAAGAGCAAAATGTATGGCATGTGGAA
CATGGGTATACCCATCTCTTTCTATTCACTCCACTTGCTGATGTATTTTT
TTTTTTCCTGCCTTCGTTGTATACGTTGTTTTCCAACCTGCTTTTTGATT
TTTCCCAAAGATAATGTTCGTACCATGTGGACATCAAGTCACTTGTGAGC
GCTGCGGGTCCTCCTACGACCACAAACCATGCATCATCTGCCGAGTCATG
ATCACAAGAGTGGTGAAAGTGTACAAGTCATGAACAGTGGCCTTACACGC
GCGCCACTCGGTGGTGGCTAGCATCCTCGCGTTTCTTGTCTTCTCGGTGC
AACGATGTGACACGGAAAAAGTCGGGGCCTGGGGATGTAGCTGGGACGCA
GGGTCTCACGCATTGGCTCTGTCTTTTATCCGATATGGGACAGGCACATG
GCAGTGGGTTTTCTTTGTTTTGGTCTTGCCAAATTTTGTTTTGTTTTGCG
GTATCGTCGTAAAAATAGTAGAAATAGAAGACGTTGGAAACGATGAAAGT
GATTCTTGTTGATGCAATAGTGCGAGAGGGGAACGTGGGCGGAGGTGATG
GCGGGGGACCCGAGCGTGCGTGGCAGTTGTCCTGTTTCGATTGTAAGTGA
TGAATGCGTAGCGAGACGGAGTGGTGTGCTCATGAGAACAGGTACGTCAG
GGTCTTGGTTCTAGGATCATGCGGCTTGTACTGTACTGGGTGCTGCTCAG
GGTTGGTGCGAAAGTGTTGGGATATGTCAAGAGTGCTTCTCTGTTTTGCT
GGCCGTGCACATTTTCTGCAATCCAGACTAGTCTAAGCCGTTCACCAATG
GCTTTGCGTCTTCCATCTGTGTGTTGTAGAAGATGCTGCAGAACGTTTTT
TTTGGTCGTTGTGGTCTTGTGAACTGGCGGTGGTGGGTGTTCTTGCCTCG
ATATACAGAAAAATAACATGTCTGTTCCTGCCTTGCGATCAGTCGCTGTT
TTGCTGCAGCAAGGTTGTGCTAGTTGACTGTTCCGCTCTGTTCGATTAAT
GTTTTTGCAGAGATGATCAAGCGTGTGCTCACATTTTCTCAACACAATAG
GGGACTCGCAATAAGGCGGGTGTTGTTGGCTTGTCACAACGTTTTGCTCA
AAAAGTCGGGTTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10872:2265..8279-

>mRNA_H-paniculata_contig10872.561.1 ID=mRNA_H-paniculata_contig10872.561.1|Name=mRNA_H-paniculata_contig10872.561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig10872:2265..8279- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTGCCCCAAGATGTACTGCCCCAAGACATTGATCGCTCACATTAT
CGGGAAGGGTGGATTGACCGTCAGAAGGATATCAAGAGAAAGCAAGACGG
CTATCGTCATCAGGCCAAGGAACAATGGAGATGGCGACGTTGTTATCACG
GGCAAGCCCAAAGACGTTTCGACATTGATCGCTCACATTATCGGGAAGGG
TGGATTGACCGTCAGAAGGATATCAAGAGAAAGCAAGACGGCTATCGTCA
TCAGGCCAAGGAACAATGGAGATGGCGACGTTGTTATCACGGGCAAGCCC
AAAGACGTTTCGGTTGCAAAACATTTGGTCGAAGAGCTCTACCGAGAAAA
GGGAGTGAACCCCGACAGGATGCCCCCGCCCGGCGGCGCCGCTACCCCCG
CCGCCTCCGCCGCTGCACACGCGGCAGCCGCGACCACTTCCACCTTCCAC
ACCACACAGGGCGCCGGGCGGGCTCGACTCGGCGATCCCGCGCCAGCAGG
CGCCGACGCCATGATCAACCGTTTGGCTCAAGGGAAGCCGCCAGCGGCCG
CGACAACGGCAACCGCCGCGGCGCCAGGAGGTGGGGGCGGGAAACGCATG
GTGGCTGCGGCTGCGCCCGCTCTTGCTGGCTCCAAAGTGGTGGCGGTCGC
GGGCGCTTGGGGCGGTGAGATGCGGGCACTGCTGAAGCGGGCGGGGTGCG
AGAAGCACTTAGCCATGTTCCAGCGAGAGATGGTAGATATGGAGGTGCTG
ACGATGATGCGGGACAAGGACTTTCACAAGATGGGGCTTAATGAGGTTGC
AAAACATTTGGTCGAAGAGCTCTACCGAGAAAAGGGAGTGAACCCCGACA
GGATGCCCCCGCCCGGCGGCGCCGCTACCCCCGCCGCCTCCGCCGCTGCA
CACGCGGCAGCCGCGACCACTTCCACCTTCCACACCACACAGGGCGCCGG
GCGGGCTCGACTCGGCGATCCCGCGCCAGCAGGCGCCGACGCCATGATCA
ACCGTTTGGCTCAAGGGAAGCCGCCAGCGGCCGCGACAACGGCAACCGCC
GCGGCGCCAGGAGGTGGGGGCGGGAAACGCATGGTGGCTGCGGCTGCGCC
CGCTCTTGCTGGCTCCAAAGTGGTGGCGGTCGCGGGCGCTTGGGGCGGTG
AGATGCGGGCACTGCTGAAGCGGGCGGGGTGCGAGAAGCACTTAGCCATG
TTCCAGCGAGAGATGGTAGATATGGAGGTGCTGACGATGATGCGGGACAA
GGACTTTCACAAGATGGGGCTTAATGAGGGTGAGATGATCCGGATCTTGA
ACGCCCTCAAGTCTCCGGCGGATGAGGATTCGGATGACGGTCTCGACCCG
GATGACCCCCACACGTGCAAGATTTGCCTGGATGCCATCGTTGAGGGTGA
GATGATCCGGATCTTGAACGCCCTCAAGTCTCCGGCGGATGAGGATTCGG
ATGACGGTCTCGACCCGGATGACCCCCACACGTGCAAGATTTGCCTGGAT
GCCATCGTTGAGATAATGTTCGTACCATGTGGACATCAAGTCACTTGTGA
GCGCTGCGGGTCCTCCTACGACCACAAACCATGCATCATCTGCCGAGTCA
TGATCACAAGAGTGGTGAAAGTGTACAAGTCATGAATAATGTTCGTACCA
TGTGGACATCAAGTCACTTGTGAGCGCTGCGGGTCCTCCTACGACCACAA
ACCATGCATCATCTGCCGAGTCATGATCACAAGAGTGGTGAAAGTGTACA
AGTCATGA
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