prot_H-paniculata_contig21327.5603.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21327.5603.1
Unique Nameprot_H-paniculata_contig21327.5603.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length458
Homology
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BLAST of mRNA_H-paniculata_contig21327.5603.1 vs. uniprot
Match: D8LC83_ECTSI (Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC83_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 4.400e-45
Identity = 93/161 (57.76%), Postives = 113/161 (70.19%), Query Frame = 0 
Query:   34 PEKKAACRLWYPPSDAAPGGYVCPEEAKFAFRNDRACMDECVQAQWGWGYVACLEQAVWTGTCSFNQHCRAVGFAAVASSPDVPGAPNPSSDSSPITTM---GRHPRTGSVDLALGVGVGMCIGGAAVFVVLMTMRRNRRLQRWGR----AAGARAAGLGG 187
            P  +AAC LW+PP DAAPGGYVCP EA  AF ++  C++ECV+A+WGWGYV+CLEQAVWTGTCSFNQ CRAVG+AAV   P+  G+ +    +S + T    G  PR GSVDLA+GVG G+C+G AA+FVVLMT  R RR  RW +      GAR  G  G
Sbjct:  837 PACQAACGLWFPPDDAAPGGYVCPREAALAFGSEADCVEECVEAEWGWGYVSCLEQAVWTGTCSFNQQCRAVGYAAVPP-PEPRGSHHARGRNSSLITNIGGGMRPRAGSVDLAVGVGAGLCLGAAAMFVVLMT--RFRRTPRWRQHQRHGQGARGFGYDG 994
[Close]
BLAST of mRNA_H-paniculata_contig21327.5603.1 vs. uniprot
Match: A0A6H5KCT2_9PHAE (Fn3_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT2_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.550e-43
Identity = 93/164 (56.71%), Postives = 114/164 (69.51%), Query Frame = 0 
Query:   34 PEKKAACRLWYPPSDAAPGGYVCPEEAKFAFRNDRACMDECVQAQWGWGYVACLEQAVWTGTCSFNQHCRAVGFAAVASSPDVPGAPNPSS-DSSPITTMGRH-----PRTGSVDLALGVGVGMCIGGAAVFVVLMTMRRNRRLQRWGR----AAGARAAGLGG 187
            P  +AAC LW+P  DAAPGGYVCP EA  AF ++  C++EC++A+WGWGYV+CLEQAVWTGTCSFNQ CRAVG+AAV   P+  G+ +    +SS IT +G       PR GSVDLA+GVG G+C+G AA+FVVLMT  R RR  RW +      GAR  G  G
Sbjct:  622 PACQAACGLWFPRDDAAPGGYVCPREAALAFGSEADCVEECIEAEWGWGYVSCLEQAVWTGTCSFNQQCRAVGYAAVPP-PEPRGSHHARGRNSSLITNIGGGTGALGPRAGSVDLAVGVGAGLCLGAAAMFVVLMT--RFRRAPRWRQHQRHGQGARGFGYDG 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21327.5603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC83_ECTSI4.400e-4557.76Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus si... [more]
A0A6H5KCT2_9PHAE6.550e-4356.71Fn3_like domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..163
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..142
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 164..457
NoneNo IPR availableTMHMMTMhelixcoord: 143..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21327contigH-paniculata_contig21327:1068..3360 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21327.5603.1mRNA_H-paniculata_contig21327.5603.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21327 598..3672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21327.5603.1 ID=prot_H-paniculata_contig21327.5603.1|Name=mRNA_H-paniculata_contig21327.5603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp
MQRQEPREILELTSTIINFLRLPPHLFLILAPPPEKKAACRLWYPPSDAA
PGGYVCPEEAKFAFRNDRACMDECVQAQWGWGYVACLEQAVWTGTCSFNQ
HCRAVGFAAVASSPDVPGAPNPSSDSSPITTMGRHPRTGSVDLALGVGVG
MCIGGAAVFVVLMTMRRNRRLQRWGRAAGARAAGLGGSDIDHPDDPDGTV
LLNSTISAGVRGADVPRERTRVAGDDVEWIAARRRKSGGGRGRVGDGGGG
RFLSGKRIKGAPSMWAKQVGGMLELGTSRGMDKSRNARGDEGEEEEQDGL
TKAIALSSQAGAGGRGRLDIDHDHDDGDNDDGGGDDGVEYGVELLQRQRG
PQQRQHHRRLSEEAVAEGLGGWDAVVGSVLPSQGRRYVGVPTTGSWSGRM
MDQDKRENHQHRQQLGSMRDKARVRGRNIPEEEHRTVPEKSSSSDALLGG
EDGEDDG*
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