mRNA_H-paniculata_contig21327.5603.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21327.5603.1
Unique NamemRNA_H-paniculata_contig21327.5603.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21327.5603.1 vs. uniprot
Match: D8LC83_ECTSI (Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC83_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 3.990e-43
Identity = 93/161 (57.76%), Postives = 113/161 (70.19%), Query Frame = 3 
Query:  570 PEKKAACRLWYPPSDAAPGGYVCPEEAKFAFRNDRACMDECVQAQWGWGYVACLEQAVWTGTCSFNQHCRAVGFAAVASSPDVPGAPNPSSDSSPITTM---GRHPRTGSVDLALGVGVGMCIGGAAVFVVLMTMRRNRRLQRWGR----AAGARAAGLGG 1031
            P  +AAC LW+PP DAAPGGYVCP EA  AF ++  C++ECV+A+WGWGYV+CLEQAVWTGTCSFNQ CRAVG+AAV   P+  G+ +    +S + T    G  PR GSVDLA+GVG G+C+G AA+FVVLMT  R RR  RW +      GAR  G  G
Sbjct:  837 PACQAACGLWFPPDDAAPGGYVCPREAALAFGSEADCVEECVEAEWGWGYVSCLEQAVWTGTCSFNQQCRAVGYAAVPP-PEPRGSHHARGRNSSLITNIGGGMRPRAGSVDLAVGVGAGLCLGAAAMFVVLMT--RFRRTPRWRQHQRHGQGARGFGYDG 994
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BLAST of mRNA_H-paniculata_contig21327.5603.1 vs. uniprot
Match: A0A6H5KCT2_9PHAE (Fn3_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT2_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 4.530e-41
Identity = 93/164 (56.71%), Postives = 114/164 (69.51%), Query Frame = 3 
Query:  570 PEKKAACRLWYPPSDAAPGGYVCPEEAKFAFRNDRACMDECVQAQWGWGYVACLEQAVWTGTCSFNQHCRAVGFAAVASSPDVPGAPNPSS-DSSPITTMGRH-----PRTGSVDLALGVGVGMCIGGAAVFVVLMTMRRNRRLQRWGR----AAGARAAGLGG 1031
            P  +AAC LW+P  DAAPGGYVCP EA  AF ++  C++EC++A+WGWGYV+CLEQAVWTGTCSFNQ CRAVG+AAV   P+  G+ +    +SS IT +G       PR GSVDLA+GVG G+C+G AA+FVVLMT  R RR  RW +      GAR  G  G
Sbjct:  622 PACQAACGLWFPRDDAAPGGYVCPREAALAFGSEADCVEECIEAEWGWGYVSCLEQAVWTGTCSFNQQCRAVGYAAVPP-PEPRGSHHARGRNSSLITNIGGGTGALGPRAGSVDLAVGVGAGLCLGAAAMFVVLMT--RFRRAPRWRQHQRHGQGARGFGYDG 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21327.5603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC83_ECTSI3.990e-4357.76Beta-glucosidase, family GH3 n=1 Tax=Ectocarpus si... [more]
A0A6H5KCT2_9PHAE4.530e-4156.71Fn3_like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21327contigH-paniculata_contig21327:598..3672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue1.6e-42
Seed eggNOG ortholog2880.D8LC83
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K05349
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000272,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005886,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0008422,GO:0009056,GO:0009057,GO:0009251,GO:0015926,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.xylan 1,4-beta-xylosidase activity
EggNOG OGs2QQ55@2759,COG1472@1
EC3.2.1.21
COG Functional cat.G
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size2156
Cds size1374
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21327.5603.1prot_H-paniculata_contig21327.5603.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21327 1068..3360 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.4016714-UTR-H-paniculata_contig21327:597..10671622929572.4016714-UTR-H-paniculata_contig21327:597..1067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21327 598..1067 +
1691480919.2318013-UTR-H-paniculata_contig21327:597..10671691480919.2318013-UTR-H-paniculata_contig21327:597..1067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21327 598..1067 +
1622929572.4664204-UTR-H-paniculata_contig21327:3360..36721622929572.4664204-UTR-H-paniculata_contig21327:3360..3672Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21327 3361..3672 +
1691480919.2776012-UTR-H-paniculata_contig21327:3360..36721691480919.2776012-UTR-H-paniculata_contig21327:3360..3672Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21327 3361..3672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.4251902-CDS-H-paniculata_contig21327:1067..13341622929572.4251902-CDS-H-paniculata_contig21327:1067..1334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21327 1068..1334 +
1691480919.249323-CDS-H-paniculata_contig21327:1067..13341691480919.249323-CDS-H-paniculata_contig21327:1067..1334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21327 1068..1334 +
1622929572.4455318-CDS-H-paniculata_contig21327:2253..33601622929572.4455318-CDS-H-paniculata_contig21327:2253..3360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21327 2254..3360 +
1691480919.267787-CDS-H-paniculata_contig21327:2253..33601691480919.267787-CDS-H-paniculata_contig21327:2253..3360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21327 2254..3360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21327.5603.1

>prot_H-paniculata_contig21327.5603.1 ID=prot_H-paniculata_contig21327.5603.1|Name=mRNA_H-paniculata_contig21327.5603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp
MQRQEPREILELTSTIINFLRLPPHLFLILAPPPEKKAACRLWYPPSDAA
PGGYVCPEEAKFAFRNDRACMDECVQAQWGWGYVACLEQAVWTGTCSFNQ
HCRAVGFAAVASSPDVPGAPNPSSDSSPITTMGRHPRTGSVDLALGVGVG
MCIGGAAVFVVLMTMRRNRRLQRWGRAAGARAAGLGGSDIDHPDDPDGTV
LLNSTISAGVRGADVPRERTRVAGDDVEWIAARRRKSGGGRGRVGDGGGG
RFLSGKRIKGAPSMWAKQVGGMLELGTSRGMDKSRNARGDEGEEEEQDGL
TKAIALSSQAGAGGRGRLDIDHDHDDGDNDDGGGDDGVEYGVELLQRQRG
PQQRQHHRRLSEEAVAEGLGGWDAVVGSVLPSQGRRYVGVPTTGSWSGRM
MDQDKRENHQHRQQLGSMRDKARVRGRNIPEEEHRTVPEKSSSSDALLGG
EDGEDDG*
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mRNA from alignment at H-paniculata_contig21327:598..3672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21327.5603.1 ID=mRNA_H-paniculata_contig21327.5603.1|Name=mRNA_H-paniculata_contig21327.5603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3075bp|location=Sequence derived from alignment at H-paniculata_contig21327:598..3672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCGATAAATACCAGCCAGCTTGTCAGGTTTGGAAAGCTGTTGATTCGT
CGGCTGTTGGTTATTCATTGTAGTATAGTAGTACTAGTAGTGATTGTGAT
TGGATAAAAGGATTTTTTGGATTATCTTCGTTTTTGTAAGAGTGATTTTT
TGGATTCGGAGATAAGGATGGTGTACTCATATGGCGTTAGCGTTCTGTCA
TCTGTTCATGTAGTGTGCGTAGTTGTATGTAAATCCAATATTGAAACAAC
CATCGTCGTCTGACCGCAATAATAGCTTAGCTAGTCCTCCCTCCGTCGAC
CGTTTCGTCCGGATGGTAACTTCTGCAGTTAACACCATGTTGTGGATAAT
GACGGAGATTTAGACATGATGAACAATGACGTAGAGAAAAGAGAAAGAGA
GGAGAACGTACATGTCGAAGGAGTGAAAGTGAGAGCATCCACGCAGCAGA
GACAAAATATATATGCATAGATGCAGAGGCAAGAACCCAGAGAGATACTG
GAACTCACCTCAACAATTATTAACTTTTTACGGCTCCCCCCCCATCTATT
CTTGATATTAGCCCCCCCCCCCGAAAAAAAGGCTGCATGTAGGCTGTGGT
ACCCACCAAGTGATGCCGCGCCGGGGGGGTACGTTTGCCCGGAAGAAGCA
AAGTTTGCCTTCCGTAACGATCGGGCGTGCATGGACGAGTGCGTGCAGGC
GCAATGGGGGTGGGGCTACGTGGCTTGTCTCGAGCAGGTGAGGCTATCGC
TATCGCTATCGTTATCGTTATCGTTATCGCTACCGTAGCTAGTTAGTTAG
CTAATCTGGAGTGTCACTGCCCTAGCTGCTAACCGGAAGAGGAGCTGACT
GTTGTAAGTTAATTTGGTATATGCTTTGTTTTGGTGGAAGGAACATGATA
TTTGCCACGTCTCTTTTCGTACCGCGGCAGCAGGGTTAAATGTAATGCTT
GTTGATTATGCAAACATATTTACTGTAGAGGGAGGTGAAGGAAAGGCTAG
GGCGAGCAGAACGCACGCCGCGGCATGCATTAGCTCTACTTCAAAATAGG
AGTATAGTACTTGTAGCTCCGCCATCGATGCTGTATCTACTGTAGTATTG
TATTGCATTTACTGTAGTATCATATCGTATCGTATCGTATCGCATAGTAT
CGTATCGCATAGTATCGTATACAGTCACCCTTGATTTTCATCAAATGTGT
GGATTTATCTTTCTCGACTATGAACTAACATGATGAAAATGTTCAAGCCT
ATCGTTGAGAGTACATATCACAAGACCGGTGGCAAATGGACGCCTGCACG
GGTGGGCACATACATGCACGCACGCACACACATACACACAAACATACACA
TACACAACCCTGACCCGGCAGGTGAATAGTGTTTGTATTGATTACCCCGA
GTGCGGTAGATTTGTGGAACTTTTAAGTCTATTGAGCCTTTTGACTGATT
CAACAGCATTGAAAGTCCTGAGCATACTCCGGTTGACTGATTCAACAAAA
TTGAAAGTCCTGAGCATACTCCGGTTGACTGATTCAACAGTTCCCCCCCT
CCCATCTCCCCCGCGCGCCAACAAACAAACAAACAAACGAACAAACAAAC
AAACGAACAAACAAACAAACGAACAAACAAACAAACAACCACACAAACAA
CCACAGGCGGTATGGACTGGAACATGTTCCTTCAATCAGCATTGCCGAGC
AGTCGGCTTCGCCGCGGTAGCCTCAAGCCCAGACGTCCCTGGGGCGCCAA
ACCCATCCAGCGACTCCTCTCCCATCACAACCATGGGCAGACATCCACGC
ACGGGCAGCGTGGACCTAGCGCTTGGGGTCGGCGTGGGCATGTGCATAGG
TGGTGCGGCAGTTTTCGTGGTTTTGATGACCATGAGAAGAAACAGACGCT
TGCAGAGATGGGGCCGTGCTGCGGGCGCGAGGGCGGCGGGGTTAGGAGGA
AGCGATATCGATCACCCCGACGATCCCGACGGAACGGTGTTGTTGAACTC
GACTATTTCGGCGGGTGTACGAGGTGCGGATGTGCCGAGAGAGAGGACAC
GCGTGGCGGGGGATGACGTTGAGTGGATCGCGGCCAGACGACGGAAGAGC
GGTGGTGGTCGTGGTCGTGTTGGTGACGGTGGTGGCGGCCGGTTCTTGTC
TGGAAAGAGGATAAAAGGGGCGCCTTCGATGTGGGCCAAGCAGGTGGGGG
GGATGCTGGAGCTCGGCACGAGTCGGGGGATGGACAAGAGCCGCAACGCC
AGGGGGGATGAAGGTGAAGAGGAGGAACAAGATGGGCTCACCAAGGCAAT
TGCGCTCTCCTCACAAGCAGGAGCGGGAGGGAGAGGGAGGTTAGATATCG
ACCATGACCACGACGATGGCGACAACGATGATGGTGGTGGTGATGATGGC
GTCGAATATGGAGTGGAATTGTTGCAACGGCAACGGGGGCCACAACAGCG
ACAGCATCACCGCCGACTATCGGAGGAAGCGGTGGCGGAAGGATTGGGGG
GGTGGGATGCGGTGGTGGGGTCAGTACTACCTTCCCAGGGCCGAAGATAT
GTTGGGGTTCCGACAACTGGTTCTTGGTCTGGGCGAATGATGGACCAAGA
TAAACGGGAAAATCACCAACATCGACAACAACTAGGGAGCATGAGGGACA
AAGCACGTGTGAGGGGTAGGAATATCCCCGAGGAGGAGCATCGTACGGTG
CCAGAAAAGTCGTCATCTAGTGATGCGCTATTGGGCGGAGAGGATGGGGA
GGATGATGGTTGATCGTTGAGGAATGAAGACGATACGGGGTATGGGGGAG
CCAGCCGTAAGGATCGGGAGAGATAGCAAGCAATAGGGTAATCTAGATAT
TTATGTTTGGAGTTGGGTTTAGGGGTGACTACGACCCATGTTTGGAGTGG
CTATGGTGTACCTACCTGTAGGCAAAAGGAAACGTGATTCCTGCTCGTGG
GGTATGTGCGCTTAAATTTACATACGATGTAGCAGTGGTGTGTTTGGTGT
CACCCTTGGTGTATTTGTTGTAACTTGTTCATCAAGAAGGAGATGTATAT
ATATATATGTGTGTGTGTATCTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig21327:598..3672+

>mRNA_H-paniculata_contig21327.5603.1 ID=mRNA_H-paniculata_contig21327.5603.1|Name=mRNA_H-paniculata_contig21327.5603.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at H-paniculata_contig21327:598..3672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGGCAAGAACCCAGAGAGATACTGGAACTCACCTCAACAATTAT
TAACTTTTTACGGCTCCCCCCCCATCTATTCTTGATATTAGCCCCCCCCC
CCGAAAAAAAGGCTGCATGTAGGCTGTGGTACCCACCAAGTGATGCCGCG
CCGGGGGGGTACGTTTGCCCGGAAGAAGCAAAGTTTGCCTTCCGTAACGA
TCGGGCGTGCATGGACGAGTGCGTGCAGGCGCAATGGGGGTGGGGCTACG
TGGCTTGTCTCGAGCAGATGCAGAGGCAAGAACCCAGAGAGATACTGGAA
CTCACCTCAACAATTATTAACTTTTTACGGCTCCCCCCCCATCTATTCTT
GATATTAGCCCCCCCCCCCGAAAAAAAGGCTGCATGTAGGCTGTGGTACC
CACCAAGTGATGCCGCGCCGGGGGGGTACGTTTGCCCGGAAGAAGCAAAG
TTTGCCTTCCGTAACGATCGGGCGTGCATGGACGAGTGCGTGCAGGCGCA
ATGGGGGTGGGGCTACGTGGCTTGTCTCGAGCAGGCGGTATGGACTGGAA
CATGTTCCTTCAATCAGCATTGCCGAGCAGTCGGCTTCGCCGCGGTAGCC
TCAAGCCCAGACGTCCCTGGGGCGCCAAACCCATCCAGCGACTCCTCTCC
CATCACAACCATGGGCAGACATCCACGCACGGGCAGCGTGGACCTAGCGC
TTGGGGTCGGCGTGGGCATGTGCATAGGTGGTGCGGCAGTTTTCGTGGTT
TTGATGACCATGAGAAGAAACAGACGCTTGCAGAGATGGGGCCGTGCTGC
GGGCGCGAGGGCGGCGGGGTTAGGAGGAAGCGATATCGATCACCCCGACG
ATCCCGACGGAACGGTGTTGTTGAACTCGACTATTTCGGCGGGTGTACGA
GGTGCGGATGTGCCGAGAGAGAGGACACGCGTGGCGGGGGATGACGTTGA
GTGGATCGCGGCCAGACGACGGAAGAGCGGTGGTGGTCGTGGTCGTGTTG
GTGACGGTGGTGGCGGCCGGTTCTTGTCTGGAAAGAGGATAAAAGGGGCG
CCTTCGATGTGGGCCAAGCAGGTGGGGGGGATGCTGGAGCTCGGCACGAG
TCGGGGGATGGACAAGAGCCGCAACGCCAGGGGGGATGAAGGTGAAGAGG
AGGAACAAGATGGGCTCACCAAGGCAATTGCGCTCTCCTCACAAGCAGGA
GCGGGAGGGAGAGGGAGGTTAGATATCGACCATGACCACGACGATGGCGA
CAACGATGATGGTGGTGGTGATGATGGCGTCGAATATGGAGTGGAATTGT
TGCAACGGCAACGGGGGCCACAACAGCGACAGCATCACCGCCGACTATCG
GAGGAAGCGGTGGCGGAAGGATTGGGGGGGTGGGATGCGGTGGTGGGGTC
AGTACTACCTTCCCAGGGCCGAAGATATGTTGGGGTTCCGACAACTGGTT
CTTGGTCTGGGCGAATGATGGACCAAGATAAACGGGAAAATCACCAACAT
CGACAACAACTAGGGAGCATGAGGGACAAAGCACGTGTGAGGGGTAGGAA
TATCCCCGAGGAGGAGCATCGTACGGTGCCAGAAAAGTCGTCATCTAGTG
ATGCGCTATTGGGCGGAGAGGATGGGGAGGATGATGGTTGAGCGGTATGG
ACTGGAACATGTTCCTTCAATCAGCATTGCCGAGCAGTCGGCTTCGCCGC
GGTAGCCTCAAGCCCAGACGTCCCTGGGGCGCCAAACCCATCCAGCGACT
CCTCTCCCATCACAACCATGGGCAGACATCCACGCACGGGCAGCGTGGAC
CTAGCGCTTGGGGTCGGCGTGGGCATGTGCATAGGTGGTGCGGCAGTTTT
CGTGGTTTTGATGACCATGAGAAGAAACAGACGCTTGCAGAGATGGGGCC
GTGCTGCGGGCGCGAGGGCGGCGGGGTTAGGAGGAAGCGATATCGATCAC
CCCGACGATCCCGACGGAACGGTGTTGTTGAACTCGACTATTTCGGCGGG
TGTACGAGGTGCGGATGTGCCGAGAGAGAGGACACGCGTGGCGGGGGATG
ACGTTGAGTGGATCGCGGCCAGACGACGGAAGAGCGGTGGTGGTCGTGGT
CGTGTTGGTGACGGTGGTGGCGGCCGGTTCTTGTCTGGAAAGAGGATAAA
AGGGGCGCCTTCGATGTGGGCCAAGCAGGTGGGGGGGATGCTGGAGCTCG
GCACGAGTCGGGGGATGGACAAGAGCCGCAACGCCAGGGGGGATGAAGGT
GAAGAGGAGGAACAAGATGGGCTCACCAAGGCAATTGCGCTCTCCTCACA
AGCAGGAGCGGGAGGGAGAGGGAGGTTAGATATCGACCATGACCACGACG
ATGGCGACAACGATGATGGTGGTGGTGATGATGGCGTCGAATATGGAGTG
GAATTGTTGCAACGGCAACGGGGGCCACAACAGCGACAGCATCACCGCCG
ACTATCGGAGGAAGCGGTGGCGGAAGGATTGGGGGGGTGGGATGCGGTGG
TGGGGTCAGTACTACCTTCCCAGGGCCGAAGATATGTTGGGGTTCCGACA
ACTGGTTCTTGGTCTGGGCGAATGATGGACCAAGATAAACGGGAAAATCA
CCAACATCGACAACAACTAGGGAGCATGAGGGACAAAGCACGTGTGAGGG
GTAGGAATATCCCCGAGGAGGAGCATCGTACGGTGCCAGAAAAGTCGTCA
TCTAGTGATGCGCTATTGGGCGGAGAGGATGGGGAGGATGATGGTTGA
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