prot_H-paniculata_contig21310.5598.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig21310.5598.1
Unique Nameprot_H-paniculata_contig21310.5598.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length216
Homology
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BLAST of mRNA_H-paniculata_contig21310.5598.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 5.330e-12
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 
Query:   20 KMRKSCNACASAKRRCDGKDRCSLCFKRGVRCVYSERQKSGPKG 63
            KMR+SC+ACA AKRRCDG+ RCSLC K+ +RCVYS RQKSGPKG
Sbjct:   23 KMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKG 66
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BLAST of mRNA_H-paniculata_contig21310.5598.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.370e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0 
Query:   20 KMRKSCNACASAKRRCDGKDRCSLCFKRGVRCVYSERQKSGPKG 63
            KMR+SC+ACA AKRRCDG+ RC LC K+ +RCVYS RQKSGPKG
Sbjct:   23 KMRRSCDACALAKRRCDGELRCLLCCKKSIRCVYSTRQKSGPKG 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21310.5598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Z3_ECTSI5.330e-1277.27Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JWH9_9PHAE3.370e-1175.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 19..62
e-value: 1.2E-4
score: 31.5
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 23..58
e-value: 3.6E-5
score: 23.8
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 24..51
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 24..53
score: 8.577
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 17..77
e-value: 1.2E-8
score: 36.8
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 16..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21310contigH-paniculata_contig21310:2676..4318 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21310.5598.1mRNA_H-paniculata_contig21310.5598.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig21310 2580..4318 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig21310.5598.1 ID=prot_H-paniculata_contig21310.5598.1|Name=mRNA_H-paniculata_contig21310.5598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
MEGKKRSRKSGGRKKQTGPKMRKSCNACASAKRRCDGKDRCSLCFKRGVR
CVYSERQKSGPKGIIKNADGTITTISDATILKEETKLDSSSSLLKIFRPP
LTPANQPAKKRTRPQDPIPPGPAPTAAAATTAATTVAAPDAASPTIANWQ
SAERHDSRRSNTSKPRSHFSNIVPSTPVNIETKLAAISGTDETTMTMGVK
NTLKAKDQRANEKEAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf