mRNA_H-paniculata_contig21310.5598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21310.5598.1
Unique NamemRNA_H-paniculata_contig21310.5598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21310.5598.1 vs. uniprot
Match: D7G8Z3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z3_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-11
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  154 KMRKSCNACASAKRRCDGKDRCSLCFKRGVRCVYSERQKSGPKG 285
            KMR+SC+ACA AKRRCDG+ RCSLC K+ +RCVYS RQKSGPKG
Sbjct:   23 KMRRSCDACALAKRRCDGELRCSLCCKKSIRCVYSTRQKSGPKG 66
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BLAST of mRNA_H-paniculata_contig21310.5598.1 vs. uniprot
Match: A0A6H5JWH9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.690e-11
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  154 KMRKSCNACASAKRRCDGKDRCSLCFKRGVRCVYSERQKSGPKG 285
            KMR+SC+ACA AKRRCDG+ RC LC K+ +RCVYS RQKSGPKG
Sbjct:   23 KMRRSCDACALAKRRCDGELRCLLCCKKSIRCVYSTRQKSGPKG 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21310.5598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Z3_ECTSI1.070e-1177.27Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JWH9_9PHAE6.690e-1175.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21310contigH-paniculata_contig21310:2580..4318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size745
Cds size648
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21310.5598.1prot_H-paniculata_contig21310.5598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21310 2676..4318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.8268247-UTR-H-paniculata_contig21310:2579..26751622929571.8268247-UTR-H-paniculata_contig21310:2579..2675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21310 2580..2675 +
1691480919.0433307-UTR-H-paniculata_contig21310:2579..26751691480919.0433307-UTR-H-paniculata_contig21310:2579..2675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21310 2580..2675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.842547-CDS-H-paniculata_contig21310:2675..27471622929571.842547-CDS-H-paniculata_contig21310:2675..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21310 2676..2747 +
1691480919.0574133-CDS-H-paniculata_contig21310:2675..27471691480919.0574133-CDS-H-paniculata_contig21310:2675..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21310 2676..2747 +
1622929571.8601787-CDS-H-paniculata_contig21310:3153..32461622929571.8601787-CDS-H-paniculata_contig21310:3153..3246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21310 3154..3246 +
1691480919.0693157-CDS-H-paniculata_contig21310:3153..32461691480919.0693157-CDS-H-paniculata_contig21310:3153..3246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21310 3154..3246 +
1622929571.878724-CDS-H-paniculata_contig21310:3835..43181622929571.878724-CDS-H-paniculata_contig21310:3835..4318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21310 3836..4318 +
1691480919.0800529-CDS-H-paniculata_contig21310:3835..43181691480919.0800529-CDS-H-paniculata_contig21310:3835..4318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21310 3836..4318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21310.5598.1

>prot_H-paniculata_contig21310.5598.1 ID=prot_H-paniculata_contig21310.5598.1|Name=mRNA_H-paniculata_contig21310.5598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
MEGKKRSRKSGGRKKQTGPKMRKSCNACASAKRRCDGKDRCSLCFKRGVR
CVYSERQKSGPKGIIKNADGTITTISDATILKEETKLDSSSSLLKIFRPP
LTPANQPAKKRTRPQDPIPPGPAPTAAAATTAATTVAAPDAASPTIANWQ
SAERHDSRRSNTSKPRSHFSNIVPSTPVNIETKLAAISGTDETTMTMGVK
NTLKAKDQRANEKEAA
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mRNA from alignment at H-paniculata_contig21310:2580..4318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21310.5598.1 ID=mRNA_H-paniculata_contig21310.5598.1|Name=mRNA_H-paniculata_contig21310.5598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1739bp|location=Sequence derived from alignment at H-paniculata_contig21310:2580..4318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGAACACATCTCTCTTCCAAAATAGTACCACACACAAGAAACACCAGC
ATCGGCCTCTCTCACTGGCCAGGCGCGGCACTGTACCAACAGAAACATGG
AGGGAAAGAAGCGATCTCGCAAGTCGGGGGGAAGAAAGAAGCAGACGGGA
CCAAAGATGAGGAAGTCGGTGAGTGACAAGCATGACTTCAATCTCCGGAC
CAACGAACCAACCTACTGCCAGAGATCGGATTGAAATATACATACAGATT
GTGCTAACGAGAGGTTCACCTCTTGTATCCACCGCCAACATTGGCAAACT
GAACCGATACTTCGTATGATGCAGCAGTGAGGGCGCATCTAGTTCGAGCT
ATAACTGTTCTTCCATCATTTGATGCAGGTCAGGCGCTGACTACCCTCCC
CTCTTTCCCCCCTGCGCTCCCTCTCTGTCCGTCCGTCCGTCCGTCCGTCT
GTCTGTCTGTCCGTCTGTCCGTCTGTCCGTTTGTCTGTCTTATCTGTCGT
TCGTCTCTTCTAATGTTTCTGACCTGCCCTCTTCCTTTCGAACGTACAAA
CAACGTAAATCTATATTCTCGAAGTGCAATGCTTGTGCCTCTGCAAAGCG
AAGATGCGACGGGAAGGATCGATGCTCGCTGTGCTTCAAGAGAGGTGTCC
GATGCGTTTACAGCGAGGTATGCGAAGCGGTTTACACATGACAGTGTTCT
TTCGTCCCGGTGTGTAGTGGTACTTGTTTACTTATTTTGAAGGCGTATTG
TACAGCGAAGTTCTCTTCTCCGAAAAATCCTTGTCATCGGCAGTGAGGTT
GTTTGTATGCTTGTATGTGCGTGGCTGGCTGCATGACTGCCATCTGTGAT
GCTGGCTACATTTTTGGTCAAGAAGCAAGACGCAACTGGCGGGTTTTCAA
CGCTACACTATGATCGATTAGGGTGATGACACCAAGTGTTTTTGATGACC
TTCTGCGATCGTCTTTTTGTTTGCACTGTGGCGCTTGGTCCGTTCTGGGA
AACGAGAACCGTTGTTCGTATAATGAAAACACAAATTTCCCAAGAGGGAA
TTTCGATTTCTCTTACCTCTTTGACTGCACCCAATTTTTGTTTCTGCGTT
CACCCCAAAATGCCGATTTGCAGACGTCGGAAACATAATTGTCGAGCTCT
TGATTCTTATCTCTCCCTCCCACCCCGTCACCCCTCCTCCCCCCCCCCTC
TCTCTGTCTCTCTTTCTTTGTCTGTCCAAATGTCGTTTTCTCCCTTCTAC
ATCCAGCGCCAGAAGAGTGGCCCTAAGGGAATAATAAAAAACGCCGATGG
CACCATCACCACGATCAGCGATGCTACGATACTCAAAGAAGAGACGAAAT
TGGATTCCTCCTCCTCTCTCCTGAAAATTTTCCGGCCGCCCTTGACGCCA
GCGAATCAGCCTGCCAAGAAGCGCACCCGTCCGCAGGACCCAATCCCACC
GGGGCCGGCGCCAACGGCAGCAGCAGCAACAACAGCAGCAACAACCGTCG
CTGCACCTGACGCGGCCTCTCCTACCATCGCTAACTGGCAGTCTGCTGAG
CGTCATGACAGCAGAAGAAGTAATACCTCCAAGCCCCGTTCCCACTTCTC
CAACATCGTACCATCTACGCCTGTAAACATCGAAACGAAGCTGGCAGCAA
TCAGCGGCACAGACGAGACGACGATGACCATGGGAGTGAAGAATACTCTC
AAGGCAAAGGACCAGAGGGCGAACGAAAAGGAAGCGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig21310:2580..4318+

>mRNA_H-paniculata_contig21310.5598.1 ID=mRNA_H-paniculata_contig21310.5598.1|Name=mRNA_H-paniculata_contig21310.5598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig21310:2580..4318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGAAAGAAGCGATCTCGCAAGTCGGGGGGAAGAAAGAAGCAGAC
GGGACCAAAGATGAGGAAGTCGATGGAGGGAAAGAAGCGATCTCGCAAGT
CGGGGGGAAGAAAGAAGCAGACGGGACCAAAGATGAGGAAGTCGTGCAAT
GCTTGTGCCTCTGCAAAGCGAAGATGCGACGGGAAGGATCGATGCTCGCT
GTGCTTCAAGAGAGGTGTCCGATGCGTTTACAGCGAGTGCAATGCTTGTG
CCTCTGCAAAGCGAAGATGCGACGGGAAGGATCGATGCTCGCTGTGCTTC
AAGAGAGGTGTCCGATGCGTTTACAGCGAGCGCCAGAAGAGTGGCCCTAA
GGGAATAATAAAAAACGCCGATGGCACCATCACCACGATCAGCGATGCTA
CGATACTCAAAGAAGAGACGAAATTGGATTCCTCCTCCTCTCTCCTGAAA
ATTTTCCGGCCGCCCTTGACGCCAGCGAATCAGCCTGCCAAGAAGCGCAC
CCGTCCGCAGGACCCAATCCCACCGGGGCCGGCGCCAACGGCAGCAGCAG
CAACAACAGCAGCAACAACCGTCGCTGCACCTGACGCGGCCTCTCCTACC
ATCGCTAACTGGCAGTCTGCTGAGCGTCATGACAGCAGAAGAAGTAATAC
CTCCAAGCCCCGTTCCCACTTCTCCAACATCGTACCATCTACGCCTGTAA
ACATCGAAACGAAGCTGGCAGCAATCAGCGGCACAGACGAGACGACGATG
ACCATGGGAGTGAAGAATACTCTCAAGGCAAAGGACCAGAGGGCGAACGA
AAAGGAAGCGGCGCGCCAGAAGAGTGGCCCTAAGGGAATAATAAAAAACG
CCGATGGCACCATCACCACGATCAGCGATGCTACGATACTCAAAGAAGAG
ACGAAATTGGATTCCTCCTCCTCTCTCCTGAAAATTTTCCGGCCGCCCTT
GACGCCAGCGAATCAGCCTGCCAAGAAGCGCACCCGTCCGCAGGACCCAA
TCCCACCGGGGCCGGCGCCAACGGCAGCAGCAGCAACAACAGCAGCAACA
ACCGTCGCTGCACCTGACGCGGCCTCTCCTACCATCGCTAACTGGCAGTC
TGCTGAGCGTCATGACAGCAGAAGAAGTAATACCTCCAAGCCCCGTTCCC
ACTTCTCCAACATCGTACCATCTACGCCTGTAAACATCGAAACGAAGCTG
GCAGCAATCAGCGGCACAGACGAGACGACGATGACCATGGGAGTGAAGAA
TACTCTCAAGGCAAAGGACCAGAGGGCGAACGAAAAGGAAGCGGCG
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