mRNA_H-paniculata_contig21305.5596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21305.5596.1
Unique NamemRNA_H-paniculata_contig21305.5596.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 301 bits (771), Expect = 7.990e-87
Identity = 236/726 (32.51%), Postives = 347/726 (47.80%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVD-KSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVA---RANGVRIKR-LRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGG-TPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYD---KDSPSYRIYNPENKSVQLSRNVRFDEEDF----------VTGHHGQQEHE--GTRNIGDFFNTLVTPAHGSITNT--EDRTSASQMPPILPTPSLPATSANLFSVLSDDGDD----ENN------------------GDSTM---------------------------------KDAEPAVEDAPSAGTAAPASRGDITKQSGTEAQRPRDRSPIRTRQ-------GFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELP---PEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADR-REKVDKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLK------CTPAKPKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRME 1893
            VC  CE+ K +KK       ER  EPLEL+HTD+ GPV+ +S GG R+AI F +DY++   VY ++ KS++L  LK++ +D+    R + V   R LRSD GGEYTG  F+ FC  + I+ +F   Y  Q + +AE+SW  +  MARA  I A +G+G+ AEA+ +A Y  NR+       G TPY K       ++H R FGC ++    S +R K DD+A  G+ +GYD    +   YRIY P       S +V FDEE F          V  +H ++E +    + +G      + P+  S  +   E+R+   ++P       +    + + +    D DD     NN                  G +TM                                 KDA+             P  +G+    SG      RD++ +  R+       G+S+    ++ +  APVA M+T+  V +LA     EL++ DVD AYL + +EE++ I+ P    ++ P+ G++  V R+RK LYGLKQSGRNW+  +D    G G   S+ D CLY      GE  V+V  YVDDL+IA   R   DKFK  IS  F MKDL  L  +LG+ ++R+     + ISQ  YI  +L       C P      G +    G  ++  S        EY  +VGSL+YA+   RPDIA+AV    + ++
Sbjct:  102 VCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTATYIWNRSRNSTLGAGETPYYKMFGKHASVNHFRTFGCKAFVHDTSVRRGKFDDRAVEGILIGYDDIGNNPKCYRIYIPSLGRYIRSGHVTFDEETFPARVRPSNIRVETYHNEEEDDKNSMKTVGAHQEDELLPSGRSEDDDGIENRSHQDEIPNDREVDHVREYPSQVGATGWKDTDDIIRNMNNMGRTRSRTKARERRRLDDGSTTMGGNLAFAAASEIVNEDYHLTEDEKEVRAERKKAKDAKYQAHMKNGTWELTPLPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVVVL-YVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDS--------EYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQ 816          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 301 bits (771), Expect = 8.900e-86
Identity = 223/686 (32.51%), Postives = 343/686 (50.00%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVD-KSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPATSANLFSVLSDD--------------------GDDENNGDST---MKDAEP-----AVEDAPSAGTAAPASRGDITKQSGTEAQR-PRDRSPIRTR----------------------QGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREKV-DKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLKCTPAKPKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C AC KGK  ++  K  R  R    LE++HTDI GP D  S GG R+ + F++D+S++  +Y L+ KS+AL  LK+F+    + +G  +K LRSD+GGEYT K F +FC E+ I  + +A YT QQ+ VAER  R I +MAR+ +   ++ R + AEAVR AVY LNR PT+     TP E      P + H ++FGC++Y       R KLDD+    +F+GYD+ S +YR+YNP  K + +SR+V FDE D+      +++ EG      FF        G + N +++  A    P    PS  ++S++  +++ D                      D E N  S    + +++P     AVED      A       I +    E  R P   +PI  +                      +G+ + +  ++ E+ APVAR+ T+  + ++A   G+++   DV +A+LN  +EEE+ IE PP +    G    V R++K LYGLKQ+ R WN  +D+     G   S  +  LY  ++  G+  ++V  YVDD++       + + FK  +++ F M D+G +S  LG+EV++      IT      I    +    KP    A  +  G  +  +S     N T ++ +VGSL Y  T  RPDI YAV   +R ME P
Sbjct:  364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADYWRWSEEEKKVEGL-----FFE----DKDGDLINQDEQ--ADDQDPRQNLPSSSSSSSDASNIIEDPEAPPTELQRSTRERRMPERYNDYELNNVSLFCLLVNSDPITYEEAVED-DKWRNAMDEEIASIERNDTWELTRQPEGHNPIGVKWVYKTKINKEGNVEKYKARLVVKGYKQRQGIDYDEVFAPVARIETIRLLTAVATQKGWKIYQMDVKSAFLNGYLEEEVYIEQPPGYI-RKGHEDKVYRLKKALYGLKQAPRAWNTRIDEYFQRNGFMKSPYEHALYTKKNEDGDI-MIVCLYVDDMIFTGNNPGMFNDFKKAMTKEFEMTDIGEMSYFLGVEVKQMQEGIFITKKYAEEILRKFRMEDCKPV---ATPAEPGVKLSVNSTREQVNPTLFKSIVGSLRYL-TITRPDITYAVGLVSRFMEHP 1031          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA)

HSP 1 Score: 302 bits (773), Expect = 1.390e-85
Identity = 223/682 (32.70%), Postives = 341/682 (50.00%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVD-KSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGT-----------------RNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPATSANLFSVLSD------DGDDENNGDSTMKDAEPAVEDAPSAGTAAPASRGDITKQSGTEAQRPRDRSPIRTR----------------------QGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREKV-DKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLKCTPAKPKPLGAVLSYIGAGIQES--SRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C AC KGK  ++  +  +  R   PLE++HTDI+GP D +S GG R+ + F++DYS++  VY L+ KS+AL   K+F+  V + +G  +K LRSD+GGEYT K +  FC ++ I  + +A  T QQ+ VAER  R I +MAR+ +    + R + AEAV  AVY LN+ PT+     TP E      P++ HL++FGC++Y     QQR KLDD+    +F+GYDK S +YR+YNP  K + +SR+V FDE D+      +++ EG                                  S+     RT +         P       +LF ++++      +   ENN      D E A              R D  + +      P   SPI  +                      +G+ + +  ++ EI APVAR+ T+  + ++AA + +++   DV +A+LN  +EEE+ IE PP +S   G    V R++K LYGLKQ+ R WN  +D+     G   S  +  LY  ++G G+  ++V  YVDD++       + D FK  +++ F M D+G +S  LG+EV++      I +SQ  Y  ++L     K K    V++    G++ S  S   S N T ++ +VGSL Y  T  RPDI YAV   +R ME P
Sbjct:  518 LCEACVKGKQHRQKFEVGKSRRARRPLEIVHTDISGPYDIESLGGNRYYLTFIDDYSRKCWVYFLKAKSEALEKFKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADYWRWSEEEKKVEGLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSLDEAPTRTRSLNDIYNSTEPVETQFDYSLFCLMTECDPVTYEEAIENNKWKKAMDEEIAA-----------IRRNDTWELTSL----PEGHSPIGVKWVYKTKTNKEGKVEKYKARLVAKGYKQRQGVDYDEIFAPVARIDTIRLLIAVAAQYKWKIYQMDVKSAFLNGYLEEEVYIEQPPGYS-IQGKEDKVYRLKKSLYGLKQAPRAWNTRIDEYFRRNGFIKSPHEHTLYTKKNGYGDI-MIVCLYVDDMIFTGNNPGMSDDFKKAMTKEFEMTDIGEMSYFLGVEVKQMQDG--IFVSQKKYAEQILN--KFKMKDCKPVVTPADPGMKLSVDSTRESINPTLFKSLVGSLRYL-TITRPDITYAVGLVSRFMEKP 1177          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 293 bits (749), Expect = 8.300e-84
Identity = 224/681 (32.89%), Postives = 348/681 (51.10%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVD-KSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPT---PSLPATSANLFSV-----LSDDGDDENNGDST-----MKDAEPAV-EDAPSAG---------------------TAAPASRGDI--------TKQSGTEAQRPRDRSPIRTRQGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFS-RDGRGETNVLVAAYVDDLVIADRREK-VDKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLKCTPAKPKPLGAVLSYIGAGIQESSRGRSG--NSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C  C  GK  +K   K    R  +PLEL+HTDI GP+   S G   + ++F++D+S+++ VY L+ KS+A    K+F+  V + +G+ IK +RSD+GGE+T + F+ FC ++ I+   +   + QQ+ VAER  R I +MAR+ + +  + + + AEAV  AVY LNR+PTR   G TP E      P + HLRVFG  +Y     + R KLDDK+ A +F+GYD +S  Y++YNP+  ++ +SR+V FDEE    G      HE      DF + + T      T  +D       P   PT    + P +  N  SV     L D  +D    ++        D EP   E+A  +                      T+ P     I         K S  E +R + R   +   G+S+    ++ E+ APVAR+ T+  + SLAA + +++   DV +A+LN  ++EE+ I+ P  +     +   V R++K LYGLKQ+ R WN+ +D  L   G      +  LY   +DG     ++V  YVDDL+ A   ++ +D+FK ++++ F M D+G ++  LGIEV++      I ISQ  Y +E++K    K      V + +  GI+ S        ++T ++ +VGSL Y  T  RPDI YA    +R ME+P
Sbjct:  149 LCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE----GEWDFSSHE------DFNSIMPTEEEEQPTAEQDVQQEPTTPLTSPTVVQDASPPSFLNERSVERARSLGDIYEDTERLENLTLLCLFADCEPVTFEEAVQSKKWRDAMDEEIKSIEKNDTWELTSLPKGHKAIGVKWVYKAKKNSKGEIERYKARLVAK---GYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGVLDEEVYIQQPMGYKVKMQEDK-VLRLKKALYGLKQAPRAWNSRIDKYLQENGFAKCPHEHALYTKMKDG---DILIVCLYVDDLIFAGNNQRMIDEFKQSMAKVFEMTDIGLMAYYLGIEVKQLEDG--IFISQEGYAKEIIK--KFKMDDCNPVNTPVECGIKLSKHDEDEKVDTTMFKSLVGSLRYL-TCTRPDILYATGLISRYMENP 807          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: C0JJI2_SOYBN (Copia-type polyprotein n=3 Tax=Glycine subgen. Soja TaxID=1462606 RepID=C0JJI2_SOYBN)

HSP 1 Score: 293 bits (749), Expect = 1.550e-83
Identity = 224/677 (33.09%), Postives = 335/677 (49.48%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVDK-SFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGTRNIGDFFNTL---------VTPAHGSITNTEDRTSASQ---------MPPILPTPSLPATSANLFSVLSDDGDDENNGDSTMKDAE--PAVEDAPSA------GTAAPASRGD----------ITKQSGTEAQRPRDRSPIRTRQGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREKV-DKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLK------CTPAKPKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C AC  GK +++   K    R  EPL+L++TD+ GP++  S G  ++ ++F++DYS+++ VY L+ KS+A  A K F+  V + +G  IK LRSD+GGE+T K F +FC +  I+   +   + QQ+ VAER  R I  M R  +    M + + AEAV  AVY  NR+PT+     TP E      P++DHLRVFG ++Y     Q R KLDD++   VF+GYD  S  Y++YNP N    +SR+V F EE    G    +E E T +   +F  +          TPA     +T + +S+S+         M  I           +LF +  D      N D  MKD     A+E+   A         +   +G           I K +  E +R + R   +   G+ +  + ++ E+ APVARM T+  + SLAA   + +   DV +A+LN  +EE++ +E P  F    G    V ++ K LYGLKQ+ R WN ++D      G  H   +  LY      G+  + +  YVDDL+       + + FK ++S  F M D+G +S  LG+EV++    + I +SQ  Y +EVLK      C P      G      G  + +   G   +ST ++ +VGSL Y  T  RPDI YAV    R ME P
Sbjct:  192 LCEACLLGKHARRSFPKEANSRAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFVAFKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERKNRTILNMTRCMLKAKNMPKEFWAEAVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGSIAYAHVPDQGRFKLDDRSEKHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEE----GTWNWEEKEDTYDFFPYFEEIDEEALTPNDSTPALSPTPSTNEASSSSEGSSSERPRRMRNIQELYDETEVINDLFCLFVDSKP--LNFDEAMKDKRWRQAMEEEIKAIEKNNTWELSSLPKGHEAIGVKWVFKIKKNAKGEVERHKARLVAK---GYKQQYEVDYDEVFAPVARMETIRLLISLAAQMKWRIFQFDVKSAFLNGYLEEDVYVEQPMGFV-IEGQEGKVLKLNKALYGLKQAPRAWNTHIDKYFQDNGFVHCQNEYALYVKTFNNGDV-LFICLYVDDLIFTGNNPNLFEDFKESMSREFDMTDMGLMSYYLGMEVKQTQ--NGIFVSQERYTKEVLKKFNMLDCNPVNTPMEG------GLKLSKFDEGEKVDSTIFKSLVGSLRYL-TNTRPDILYAVGVVCRFMEAP 848          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 290 bits (741), Expect = 2.730e-83
Identity = 218/671 (32.49%), Postives = 332/671 (49.48%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPV-DKSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDE--------EDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPATSANLFSVLSDDGDDENNGDSTMKDAEPA-VEDAPSAGTAAPASRGDIT--KQSGTE--AQRPRDRSPIRTR----------------------QGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREKV-DKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLK-CTPAKPKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C  C  GK  + P  ++   R   PLEL+H DI GP    SF   R+ I+FV+D+S+   VY L  KS+A    KQF+      +G  +K LR+D+GGE+T   F ++C  N IK E +A YT QQ+ VAER  R I EMAR+ +    +   + AEA+ +AV+ LNR+PT+     TP+E  HR  PK+D  ++FGC +Y    SQ+R K D+K    +F+GY   S +YR+ +P  KS+ +SR+V FDE         D       ++          F  + +  A  +  ++ D T           P L A + +L  +         + D  +   EP   E+A        A   +I   K++ T     RP+ +  I  +                      +G+S+    +F E  APV RM T+ TV +LAA    ++   DV +A+LN  +EEE+ +E P  +    G    V R+RK LYGLKQ+ R WNN +D      G   S ++  LY  ++G  +  +L   YVDDL+      ++ + FK N+ + + M DLG++   LGI+V++   +  I ISQG Y   +LK     K KP+   ++ I   +  +      +++ Y+ +VGSL+Y  T  RPDI +AV   +R M DP
Sbjct:  158 ICEGCIFGKFHRLPFSQSSW-RAKAPLELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDELKAWKWENYDIEVPRFFEEPDSSHSEETQFLQSPIPSAGTADPSSPDST-----------PRLNARTRSLADIYE-------SCDLALSALEPQKFEEAVKENIWQDAMDEEIRVIKKNRTWELVDRPKSKDIIGLKWVYKTKFNEDGSIQKHKARLVAKGYSQQPGIDFNETFAPVVRMETIRTVLALAAQLKTKVYQLDVKSAFLNGELEEEVYVEQPQGYV-EKGREDKVYRLRKALYGLKQAPRAWNNKIDHYFQQNGFTRSLSEPSLYLKKEGTHDFLIL-CLYVDDLIYTSTNPRMAEVFKKNMMKEYEMTDLGTMRYFLGIQVQQS--DEGIFISQGKYAENLLKKFNMLKSKPMDTPMA-INLKLTSNDGAPKFDASIYKSVVGSLIYL-TNTRPDIVHAVSVVSRFMSDP 803          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A6A2XLF1_HIBSY (Protein indeterminate-domain 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XLF1_HIBSY)

HSP 1 Score: 296 bits (758), Expect = 3.000e-83
Identity = 216/659 (32.78%), Postives = 340/659 (51.59%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVD-KSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPAT----------------------SANLFSVLSDDGDDENNGDSTMKDAEPAVEDAPSAGTAAPASRGDITKQSGT-EAQRPRDRSPIRTRQGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREKV-DKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLKCTPAKP-KPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C  C  GK  +K   K  E R  +PLEL+HTD+ GP+   S G   + ++F++D+S+++ VY L+ KS+     K+F+  V R +G +IK +RSD+GGE+T K F++FC  N I+   +   + QQ+ VAER  R I +MAR+ + + K+ + + AEAV  AVY  NR+PTR   G TP E      P + HLR FG +++     ++R KLDDK+ + +F+GYD +S  Y++YNP+NK   +SR++ F+EE       G+ +     +  +FF+              ++   SQ     P  SL +T                      + +L  +   D  DE    +  K+    +   P    A        TKQ+   E +R + R   +   G+S+    ++ E+ APVAR+ T+  + SLAA + ++++  DV  A+LN  +EEEL I+ P  +    G    V +++K LYGLKQ+ R WN+ +D      G      +  LY     + E  ++V  YVDDL+       + ++FK  + + F M D+G ++  LGIEV++   N  I ISQ SY +E+LK    +  KP+     Y G  + +   G S + T ++ +VGSL Y  T  RPDI +AV   +R ME P
Sbjct:  508 LCEGCLVGKQFRKSFPKESETRAKKPLELIHTDVCGPIKPSSLGNNNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKAAVERESGRKIKAMRSDRGGEFTSKEFQEFCEANGIRRPMTVPRSPQQNGVAERKNRTILDMARSMLKSKKLPKEFWAEAVSCAVYLSNRSPTRSVWGKTPQEACSGRKPGISHLRTFGSIAHVHVPDERRTKLDDKSESFIFIGYDANSKGYKLYNPDNKKFVISRDLVFNEE-------GEWDFNSHTDDFNFFSQFEEDEQ----TMREQLDESQQELATPPTSLTSTXXXXXXXXXXXXGSQSERVVQRTRSLRDLYERDAMDEEI-KAIEKNDTWELTSLPKGHKAIGVKWVYKTKQNAKGEIERHKARLVAK---GYSQKAGIDYDEVFAPVARLETIRLIISLAAQNKWKIQQMDVKFAFLNGVLEEELYIQQPSGYEVK-GHEDKVLKLKKALYGLKQAPRAWNSRIDKYFQENGFNKCPYEHALYIKI--KDEDILIVCLYVDDLIFTGSNPSMFNEFKDVMMKEFEMTDMGLMAYYLGIEVKQQ--NDGIFISQESYAKEILKKFKMENCKPISTPAEY-GIKMTKHEEGESVDPTFFKSLVGSLRYL-TCTRPDILHAVGLVSRYMESP 1144          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 293 bits (750), Expect = 9.400e-83
Identity = 207/660 (31.36%), Postives = 333/660 (50.45%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVDK-SFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPATSANLFSVLSDDGDDENNGDSTMKDAEPAVEDAPSAGTAAPASRGDITKQSGTE--AQRPRDRSPI------RTR----------------QGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDD-LVIADRREKVDKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLK-CTPAKPKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C  C+ GK  K P  K    R TE L+L+HTD+ GP+   S  G ++ ++F++DY++ S V+ L+ KSD      +F+  V    G+++KRLRSD G EYT   F++FC +  I+ + +  YT QQ+ V+ER  R + EMAR  +    + + + AEAV ++VY LN  PT+   G TP+E  H   P ++HL+VFGC+ Y +    +R KLD K+  G+FLGY   S  YRIYNP  K + +SRNV+FDE         + E    R +              + N +++ S S+    L     P       + +      E    + ++  E A          A     ++ +++ T     RP ++  I      RT+                +G+ +    +F +  APVAR  T+  + +LAA  G+++   DV +A+LN  +EE++ ++ P  F     +   V ++ K LYGLKQ+ R W   +D+ L+  G   S  ++ LY  R  + E  ++++ YVDD LVI    + + +FKH++   F M DLG ++  LG+E+ +   ++ I ISQ  Y+ E+LK     K KP+   L  I   +  +      +++ YR ++GSL+Y S   RPDI +A    +R M  P
Sbjct:  429 LCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDELSRWNWEKSKAEASNKRQL-------------EVDNLQEQNSESEEQN-LDDDDFPVRGTRDLAEIY-----ERCNVAALEPKEYAEAAELEGWRVAMQEEMNMIEKNNTWQLVDRPINQKVIGLKWVYRTKLNYDGSVNKLKARLVVKGYHQQYGVDFLDTFAPVARHDTIRMLVALAAKFGWKIYHFDVKSAFLNGFLEEDIYVDQPEGFQVKGSENK-VYKLHKALYGLKQAPRAWYTRIDNYLLQKGFERSENEATLYVKRS-QNEVKLIISLYVDDMLVIGSDFDSLRQFKHDMENEFEMSDLGQMNYFLGMEIYQC--DAGIFISQRKYVLEILKKFHMEKCKPVDTPL-VINEKLSLNDAIAKVDASLYRSLIGSLLYLSA-TRPDIMFAASLLSRFMHSP 1063          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 290 bits (741), Expect = 1.320e-81
Identity = 218/671 (32.49%), Postives = 332/671 (49.48%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPV-DKSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDE--------EDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPATSANLFSVLSDDGDDENNGDSTMKDAEPA-VEDAPSAGTAAPASRGDIT--KQSGTE--AQRPRDRSPIRTR----------------------QGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREKV-DKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLK-CTPAKPKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C  C  GK  + P  ++   R   PLEL+H DI GP    SF   R+ I+FV+D+S+   VY L  KS+A    KQF+      +G  +K LR+D+GGE+T   F ++C  N IK E +A YT QQ+ VAER  R I EMAR+ +    +   + AEA+ +AV+ LNR+PT+     TP+E  HR  PK+D  ++FGC +Y    SQ+R K D+K    +F+GY   S +YR+ +P  KS+ +SR+V FDE         D       ++          F  + +  A  +  ++ D T           P L A + +L  +         + D  +   EP   E+A        A   +I   K++ T     RP+ +  I  +                      +G+S+    +F E  APV RM T+ TV +LAA    ++   DV +A+LN  +EEE+ +E P  +    G    V R+RK LYGLKQ+ R WNN +D      G   S ++  LY  ++G  +  +L   YVDDL+      ++ + FK N+ + + M DLG++   LGI+V++   +  I ISQG Y   +LK     K KP+   ++ I   +  +      +++ Y+ +VGSL+Y  T  RPDI +AV   +R M DP
Sbjct:  395 ICEGCIFGKFHRLPFSQSSW-RAKAPLELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDELKAWKWENYDIEVPRFFEEPDSSHSEETQFLQSPIPSAGTADPSSPDST-----------PRLNARTRSLADIYE-------SCDLALSALEPQKFEEAVKENIWQDAMDEEIRVIKKNRTWELVDRPKSKDIIGLKWVYKTKFNEDGSIQKHKARLVAKGYSQQPGIDFNETFAPVVRMETIRTVLALAAQLKTKVYQLDVKSAFLNGELEEEVYVEQPQGYV-EKGREDKVYRLRKALYGLKQAPRAWNNKIDHYFQQNGFTRSLSEPSLYLKKEGTHDFLIL-CLYVDDLIYTSTNPRMAEVFKKNMMKEYEMTDLGTMRYFLGIQVQQS--DEGIFISQGKYAENLLKKFNMLKSKPMDTPMA-INLKLTSNDGAPKFDASIYKSVVGSLIYL-TNTRPDIVHAVSVVSRFMSDP 1040          
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Match: A0A2I0X5W4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X5W4_9ASPA)

HSP 1 Score: 288 bits (736), Expect = 1.890e-81
Identity = 207/643 (32.19%), Postives = 318/643 (49.46%), Query Frame = 1
Query:    1 VCSACEKGKASKKPVKKNREERTTEPLELMHTDITGPVD-KSFGGCRFAIVFVEDYSKRSKVYTLRPKSDALWALKQFERDVARANGVRIKRLRSDQGGEYTGKPFRQFCTENDIK*EFSAAYTSQQSIVAERSWRNIFEMARANMITAKMGRGYCAEAVRSAVYCLNRAPTRPQNGGTPYEK*HR*IPKLDHLRVFGCMSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVRFDEEDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMPPILPTPSLPATSANLFSVLSDDGDDENNGDSTMKDAEPAVEDAPSAGTAAPASRGDITKQSGTEAQRPRDRSPIR-TRQGFSEVEDEEFFEISAPVARMSTLHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPFVRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGETNVLVAAYVDDLVIADRREK-VDKFKHNISERFRMKDLGSLSRVLGIEVRRDHPNSTITISQGSYIREVLK------CTPAK-PKPLGAVLSYIGAGIQESSRGRSGNSTEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP 1899
            +C  C  GK ++   +K  E R +  LEL+HTDI GP+  +SF G R+ I F++DYS+++ VY L+ KS+     K+F+  V +  G  I+ LRSD+GGEY    F  FC +  ++   +  Y+ QQ+ VAER  R I +M R+ + + +M + + AEAV+ ++Y  NR P       TP E      P + HL++FG ++Y     QQR KL+DK+   VF+GYD+ +  Y++ +P NK V LSR+VR +E      ++  +E E         N     A      + +R    ++   LP  S P     +F    +                               ++G+I            DR   R   +G+ +    ++ E+ APV RM T+  + S AA   + +   DV +A+LN  +EEE+ +E PP +    G+   V ++RK LYGLKQ+ R WN  +D      G      +  LY  +  +G   + VA YVDDL+      K ++ FK  + + F M DLG +   LG+EVR+    S I +SQ +Y +++LK      C P   P  LGA  S    G +        ++T+YR +VGSL Y  T  RPDI+Y+V   +R ME+P
Sbjct:  405 LCEDCIFGKHARNSFQKKAEYRASSILELVHTDICGPITPESFSGKRYFITFIDDYSRKTWVYFLKEKSETFNVFKKFKAMVEKTTGKFIRALRSDRGGEYNSAEFTSFCEQQGVRRFLTTPYSPQQNGVAERKNRTILDMVRSMLKSKEMPKEFWAEAVQCSIYIQNRCPHMKLEDKTPQEAWSGKKPTVSHLKIFGSVAYAHVPDQQRTKLEDKSKKYVFIGYDEQTKGYKLLDPINKKVVLSRDVRVNEARKWDWNNSSEEQENISFEEAVKNEKWKEAMDEEIKSIERNKTWELAE-LPKGSRPIGVKWVFKKKMN-------------------------------AQGEI------------DRYKARLVAKGYIQKAGIDYDEVFAPVTRMETIRLLISYAAQFEWPIYQMDVKSAFLNGVIEEEIYLEQPPGYK-KIGEEQKVLKLRKALYGLKQAPRAWNTRIDIYFKKNGFTQCPYEHALYVKK--KGGNLLFVALYVDDLLFMGNNGKMIENFKCEMEQEFEMTDLGLMKYFLGLEVRQG--KSGIFVSQEAYSKDILKKNKMENCNPVTTPMELGAKFSRFDGGDRV-------DATKYRSLVGSLRYL-TSTRPDISYSVGVVSRFMEEP 990          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21305.5596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T174_9STRA7.990e-8732.51Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A6A2WSU7_HIBSY8.900e-8632.51Integrase catalytic domain-containing protein n=2 ... [more]
A0A068B703_GOSBA1.390e-8532.70Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A... [more]
UPI001F0044648.300e-8432.89DDE-type integrase/transposase/recombinase n=1 Tax... [more]
C0JJI2_SOYBN1.550e-8333.09Copia-type polyprotein n=3 Tax=Glycine subgen. Soj... [more]
A0A4Y1QWW3_PRUDU2.730e-8332.49Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A6A2XLF1_HIBSY3.000e-8332.78Protein indeterminate-domain 1 n=1 Tax=Hibiscus sy... [more]
A0A151T355_CAJCA9.400e-8331.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1R9H3_PRUDU1.320e-8132.49Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A2I0X5W4_9ASPA1.890e-8132.19Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21305contigH-paniculata_contig21305:20..2022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score154.1
Seed ortholog evalue1.5e-34
Seed eggNOG ortholog946362.XP_004996232.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,COG2801@1,KOG0017@2759
COG Functional cat.J
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons3
Model size1899
Cds size1305
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21305.5596.1prot_H-paniculata_contig21305.5596.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21305 20..1428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.6436253-CDS-H-paniculata_contig21305:19..2111622929571.6436253-CDS-H-paniculata_contig21305:19..211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21305 20..211 -
1691480918.9513357-CDS-H-paniculata_contig21305:19..2111691480918.9513357-CDS-H-paniculata_contig21305:19..211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21305 20..211 -
1622929571.6627517-CDS-H-paniculata_contig21305:288..11521622929571.6627517-CDS-H-paniculata_contig21305:288..1152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21305 289..1152 -
1691480918.9620612-CDS-H-paniculata_contig21305:288..11521691480918.9620612-CDS-H-paniculata_contig21305:288..1152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21305 289..1152 -
1622929571.6776905-CDS-H-paniculata_contig21305:1179..14281622929571.6776905-CDS-H-paniculata_contig21305:1179..1428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21305 1180..1428 -
1691480918.9723353-CDS-H-paniculata_contig21305:1179..14281691480918.9723353-CDS-H-paniculata_contig21305:1179..1428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21305 1180..1428 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.6997662-UTR-H-paniculata_contig21305:1428..20221622929571.6997662-UTR-H-paniculata_contig21305:1428..2022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21305 1429..2022 -
1691480918.9836283-UTR-H-paniculata_contig21305:1428..20221691480918.9836283-UTR-H-paniculata_contig21305:1428..2022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21305 1429..2022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21305.5596.1

>prot_H-paniculata_contig21305.5596.1 ID=prot_H-paniculata_contig21305.5596.1|Name=mRNA_H-paniculata_contig21305.5596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp
MSYDMFQSQQRCKLDDKACAGVFLGYDKDSPSYRIYNPENKSVQLSRNVR
FDEEDFVTGHHGQQEHEGTRNIGDFFNTLVTPAHGSITNTEDRTSASQMP
PILPTPSLPATSANLFSVLSDDGDDENNGDSTMKDAEPAVEDAPSAGTAA
PASRGDITKQSGTEAQRPRDRSPIRTRQGFSEVEDEEFFEISAPVARMST
LHTVFSLAAAHGFELEDTDVDAAYLNARVEEELIIELPPEFSPSSGDIPF
VRRMRKCLYGLKQSGRNWNNNLDDVLVGIGLRHSTTDSCLYFSRDGRGET
NVLVAAYVDDLVIADRREKVDKFKHNISERFRMKDLGSLSRVLGIEVRRD
HPNSTITISQGSYIREVLKCTPAKPKPLGAVLSYIGAGIQESSRGRSGNS
TEYRGMVGSLVYASTGIRPDIAYAVHQAARRMEDP
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mRNA from alignment at H-paniculata_contig21305:20..2022-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21305.5596.1 ID=mRNA_H-paniculata_contig21305.5596.1|Name=mRNA_H-paniculata_contig21305.5596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2003bp|location=Sequence derived from alignment at H-paniculata_contig21305:20..2022- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGCTCAGCGTGTGAGAAGGGGAAAGCCTCGAAGAAGCCTGTGAAAAA GAATCGAGAAGAGCGGACGACCGAGCCGTTGGAACTGATGCACACTGACA TAACCGGACCGGTGGACAAGTCCTTCGGAGGATGCCGCTTCGCCATCGTC TTCGTCGAGGACTACAGCAAAAGGAGCAAAGTCTATACCTTACGACCAAA GTCGGACGCACTATGGGCCCTAAAGCAATTTGAGAGGGATGTAGCGAGGG CAAACGGTGTCCGCATTAAGCGCCTTCGGTCGGATCAGGGAGGAGAATAT ACTGGGAAACCGTTTAGGCAATTCTGCACGGAAAATGACATCAAGTAGGA GTTCTCTGCCGCCTACACATCGCAACAAAGCATTGTGGCGGAGCGCAGCT GGCGCAACATTTTCGAGATGGCAAGAGCCAACATGATCACCGCCAAGATG GGTCGTGGATATTGCGCGGAAGCGGTGCGCTCGGCAGTATACTGCCTAAA TCGCGCCCCGACGCGGCCGCAAAACGGAGGAACACCGTACGAGAAATAGC ACCGCTAGATACCAAAGCTGGACCACCTTCGCGTCTTCGGTTGTATGTCA TACGATATGTTCCAGTCGCAGCAGAGATGCAAGCTCGACGACAAAGCATG CGCGGGGGTGTTTCTTGGGTACGACAAGGACAGCCCGAGTTATCGCATAT ATAACCCGGAAAACAAGAGCGTACAGTTAAGCAGGAACGTGAGATTTGAC GAAGAGGACTTCGTAACCGGTCATCACGGACAGCAGGAGCACGAGGGAAC GCGCAATATTGGAGATTTTTTCAACACCCTAGTCACACCAGCGGTCGCGT GATCCCGCGCCCGAGGCGAGCACGGAAGCATAACTAACACGGAGGACCGG ACGTCGGCGTCACAAATGCCGCCGATATTGCCGACACCTTCGCTGCCAGC CACCAGCGCAAATCTATTCAGTGTCTTGAGCGATGATGGCGATGACGAAA ATAACGGCGACTCCACGATGAAGGATGCGGAGCCCGCAGTCGAAGACGCA CCATCAGCAGGGACAGCTGCACCTGCATCGCGGGGGGACATCACGAAGCA GTCAGGGACGGAGGCGCAGCGTCCGCGAGATCGGTCACCAATACGAACAC GTCAAGGTTTTTCAGAGGTGGAGGATGAAGAGTTCTTTGAAATCAGTGCC CCCGTAGCTCGCATGTCGACGTTACATACTGTTTTTAGCCTGGCCGCTGC ACATGGTTTCGAGTTAGAAGACACGGACGTAGATGCGGCGTATTTGAATG CCCGGGTAGAAGAAGAACTGATTATTGAACTACCCCCCGAGTTTTCCCCT TCCTCCGGAGACATACCGTTTGTGCGTCGCATGCGTAAATGCCTGTATGG CCTCAAGCAGAGCGGTCGAAACTGGAATAACAATCTTGACGATGTTCTTG TTGGGATAGGACTCCGGCATTCCACTACTGACTCATGCTTGTACTTCTCT CGCGACGGTAGAGGAGAGACAAACGTTCTGGTGGCCGCCTATGTTGACGA CCTGGTCATTGCTGACCGCCGTGAGAAAGTAGACAAGTTCAAGCACAACA TAAGTGAACGTTTTAGGATGAAAGACTTGGGCTCCCTCTCGCGCGTGTTG GGGATAGAGGTACGACGTGACCACCCTAATAGTACCATAACCATATCGCA GGGTAGCTACATCCGCGAGGTGCTGAAATGTACGGTGTTGACGAATGTCG AGGCGTGCCCACCCCTGTAGAGGGAAAAGGGAAGATTTTGGCACCCGAGC CGGCCGACAAGCCCGCCAAACCCAAACCACTTGGGGCTGTACTGTCATAC ATAGGCGCAGGAATACAAGAAAGCAGCAGAGGGAGAAGCGGCAATTCAAC TGAATACAGAGGCATGGTAGGATCACTCGTATACGCCTCGACAGGAATTA GACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGAGGAC CCA
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Coding sequence (CDS) from alignment at H-paniculata_contig21305:20..2022-

>mRNA_H-paniculata_contig21305.5596.1 ID=mRNA_H-paniculata_contig21305.5596.1|Name=mRNA_H-paniculata_contig21305.5596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig21305:20..2022- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATACGATATGTTCCAGTCGCAGCAGAGATGCAAGCTCGACGACAA
AGCATGCGCGGGGGTGTTTCTTGGGTACGACAAGGACAGCCCGAGTTATC
GCATATATAACCCGGAAAACAAGAGCGTACAGTTAAGCAGGAACGTGAGA
TTTGACGAAGAGGACTTCGTAACCGGTCATCACGGACAGCAGGAGCACGA
GGGAACGCGCAATATTGGAGATTTTTTCAACACCCTAGTCACACCAGCGA
TGTCATACGATATGTTCCAGTCGCAGCAGAGATGCAAGCTCGACGACAAA
GCATGCGCGGGGGTGTTTCTTGGGTACGACAAGGACAGCCCGAGTTATCG
CATATATAACCCGGAAAACAAGAGCGTACAGTTAAGCAGGAACGTGAGAT
TTGACGAAGAGGACTTCGTAACCGGTCATCACGGACAGCAGGAGCACGAG
GGAACGCGCAATATTGGAGATTTTTTCAACACCCTAGTCACACCAGCGCA
CGGAAGCATAACTAACACGGAGGACCGGACGTCGGCGTCACAAATGCCGC
CGATATTGCCGACACCTTCGCTGCCAGCCACCAGCGCAAATCTATTCAGT
GTCTTGAGCGATGATGGCGATGACGAAAATAACGGCGACTCCACGATGAA
GGATGCGGAGCCCGCAGTCGAAGACGCACCATCAGCAGGGACAGCTGCAC
CTGCATCGCGGGGGGACATCACGAAGCAGTCAGGGACGGAGGCGCAGCGT
CCGCGAGATCGGTCACCAATACGAACACGTCAAGGTTTTTCAGAGGTGGA
GGATGAAGAGTTCTTTGAAATCAGTGCCCCCGTAGCTCGCATGTCGACGT
TACATACTGTTTTTAGCCTGGCCGCTGCACATGGTTTCGAGTTAGAAGAC
ACGGACGTAGATGCGGCGTATTTGAATGCCCGGGTAGAAGAAGAACTGAT
TATTGAACTACCCCCCGAGTTTTCCCCTTCCTCCGGAGACATACCGTTTG
TGCGTCGCATGCGTAAATGCCTGTATGGCCTCAAGCAGAGCGGTCGAAAC
TGGAATAACAATCTTGACGATGTTCTTGTTGGGATAGGACTCCGGCATTC
CACTACTGACTCATGCTTGTACTTCTCTCGCGACGGTAGAGGAGAGACAA
ACGTTCTGGTGGCCGCCTATGTTGACGACCTGGTCATTGCTGACCGCCGT
GAGAAAGTAGACAAGTTCAAGCACAACATAAGTGAACGTTTTAGGATGAA
AGACTTGGGCTCCCTCTCGCGCGTGTTGGGGATAGAGGTACGACGTGACC
ACCCTAATAGTACCATAACCATATCGCAGGGTAGCTACATCCGCGAGGTG
CTGAAATGTACGCACGGAAGCATAACTAACACGGAGGACCGGACGTCGGC
GTCACAAATGCCGCCGATATTGCCGACACCTTCGCTGCCAGCCACCAGCG
CAAATCTATTCAGTGTCTTGAGCGATGATGGCGATGACGAAAATAACGGC
GACTCCACGATGAAGGATGCGGAGCCCGCAGTCGAAGACGCACCATCAGC
AGGGACAGCTGCACCTGCATCGCGGGGGGACATCACGAAGCAGTCAGGGA
CGGAGGCGCAGCGTCCGCGAGATCGGTCACCAATACGAACACGTCAAGGT
TTTTCAGAGGTGGAGGATGAAGAGTTCTTTGAAATCAGTGCCCCCGTAGC
TCGCATGTCGACGTTACATACTGTTTTTAGCCTGGCCGCTGCACATGGTT
TCGAGTTAGAAGACACGGACGTAGATGCGGCGTATTTGAATGCCCGGGTA
GAAGAAGAACTGATTATTGAACTACCCCCCGAGTTTTCCCCTTCCTCCGG
AGACATACCGTTTGTGCGTCGCATGCGTAAATGCCTGTATGGCCTCAAGC
AGAGCGGTCGAAACTGGAATAACAATCTTGACGATGTTCTTGTTGGGATA
GGACTCCGGCATTCCACTACTGACTCATGCTTGTACTTCTCTCGCGACGG
TAGAGGAGAGACAAACGTTCTGGTGGCCGCCTATGTTGACGACCTGGTCA
TTGCTGACCGCCGTGAGAAAGTAGACAAGTTCAAGCACAACATAAGTGAA
CGTTTTAGGATGAAAGACTTGGGCTCCCTCTCGCGCGTGTTGGGGATAGA
GGTACGACGTGACCACCCTAATAGTACCATAACCATATCGCAGGGTAGCT
ACATCCGCGAGGTGCTGAAATGTACGCCCGCCAAACCCAAACCACTTGGG
GCTGTACTGTCATACATAGGCGCAGGAATACAAGAAAGCAGCAGAGGGAG
AAGCGGCAATTCAACTGAATACAGAGGCATGGTAGGATCACTCGTATACG
CCTCGACAGGAATTAGACCTGATATAGCATACGCGGTACACCAAGCAGCA
CGTCGTATGGAGGACCCACCCGCCAAACCCAAACCACTTGGGGCTGTACT
GTCATACATAGGCGCAGGAATACAAGAAAGCAGCAGAGGGAGAAGCGGCA
ATTCAACTGAATACAGAGGCATGGTAGGATCACTCGTATACGCCTCGACA
GGAATTAGACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTAT
GGAGGACCCA
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