mRNA_H-paniculata_contig21242.5569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21242.5569.1
Unique NamemRNA_H-paniculata_contig21242.5569.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig21242.5569.1 vs. uniprot
Match: A0A6H5KKY0_9PHAE (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY0_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 8.230e-92
Identity = 173/268 (64.55%), Postives = 191/268 (71.27%), Query Frame = 1 
Query:    1 QRLLVEAAAFERFGYSDMAFTCARCVLQIQAE----FARSSDMEVATTCAINAVLRGKHLSVNYLRPPKTRALPPAAAAATGAEERWTGARKEPGVECVFETALLLMLRQHEAFPHPVTNIWAGGVMVLLHEWMVNRGELAAAEGLGMSLRGCCPLSRGAEAFVEAGLQRVRLLRAQRR---------WHEAVKSASALAKLSDARSLAPQYARALLELSHVRLDAEPTSPVGALPHALRCLAVCESYSLDAIHALAMIHLAEVSERV 765
            QRLLVEA AFERFGYSDMA  CAR VLQ+ A      A +S +E+A+ C INA LRGK L    L PP        +A   G E R  G   E G  CV+  AL + LRQH+ FPHPV+N+WA GVMVLLHEWMVNRGE  AAEGLGMSLR CCPLS+GAE+F+EA LQ+VRLLRAQ R         W EAVK+AS LAKLSD R LAPQYAR LLELS   L AEP SPVGALPHALRCLAVCESY+LDAIHA AM HLAEV  R+
Sbjct:  513 QRLLVEAGAFERFGYSDMAAACARSVLQVGAADVVVAATASSVELASACMINATLRGKRLP--GLPPPSVFC---GSAGTPGEERRGDGEEDEQG--CVYAVALSIALRQHKEFPHPVSNVWAAGVMVLLHEWMVNRGEFRAAEGLGMSLRACCPLSQGAESFIEAHLQKVRLLRAQGRQVIPQPPVRWAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAEPASPVGALPHALRCLAVCESYTLDAIHASAMTHLAEVHLRM 773
[Close]
BLAST of mRNA_H-paniculata_contig21242.5569.1 vs. uniprot
Match: D7FTQ0_ECTSI (Anaphase-promoting complex subunit 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ0_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.580e-72
Identity = 145/255 (56.86%), Postives = 160/255 (62.75%), Query Frame = 1 
Query:    1 QRLLVEAAAFERFGYSDMAFTCARCVLQIQAEFARSSDMEVATTCAINAVLRGKHLSVNYLRPPKTRALPPAAAAATGAEERWTGARKEPGVECVFETALLLMLRQHEAFPHPVTNIWAGGVMVLLHEWMVNRGELAAAEGLGMSLRGCCPLSRGAEAFVEAGLQRVRLLRAQRRWHEAVKSASALAKLSDARSLAPQYARALLELSHVRLDAEPTSPVGALPHALRCLAVCESYSLDAIHALAMIHLAEVSERV 765
            QRLLVEA AFERFGYSDMA  CAR VLQI  + A +S +E+A+ C INA LRGK L    L PP        +A   G E +  G   E G  CVF  AL + LRQH+ FPHPV+N+WA GVMVLLHEWMVNRGE  AAEG                                  W EAVK+AS LAKLSD R LAPQYAR LLELS   L AEP SPVGALPHALRCLAVCESY+LDAIHA AM HLA+V  R+
Sbjct:  344 QRLLVEAGAFERFGYSDMAAACARSVLQIHGDIATASSVELASACIINATLRGKTLP--GLPPPPVFG---GSAGTPGEERKGDGEEDEQG--CVFAVALSIALRQHKEFPHPVSNVWAAGVMVLLHEWMVNRGEFRAAEG----------------------------------WAEAVKAASDLAKLSDTRGLAPQYARLLLELSRAWLGAEPASPVGALPHALRCLAVCESYTLDAIHASAMTHLAQVHLRM 557
[Close]
BLAST of mRNA_H-paniculata_contig21242.5569.1 vs. uniprot
Match: F0Y6Q2_AURAN (Anaphase-promoting complex subunit 5 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q2_AURAN)

HSP 1 Score: 87.8 bits (216), Expect = 5.270e-16
Identity = 58/140 (41.43%), Postives = 76/140 (54.29%), Query Frame = 1 
Query:  343 TNIWAGGVMVLLHEWMVNRGELAAAEGLGMSLRGCCPLSR--GAEAFVEAGLQRVRLLRAQRRWHEAVKSASALAKLSDARSLAPQYARALLELSHVRLDAEPTSPVGALPHALRCLAVCESYSLDAIHALAMIHLAEVS 756
            +NI      +L  EW ++RG    AE L  +L G  P+    G EA VEA     RLL  + RW  AVK+ + L +    + L  Q A  L+  +H RLDA P SPV AL  ALRCLA+CE ++LD +HA A   L  V+
Sbjct:  669 SNIAIRAEYLLKFEWALHRGANKRAEALASALLGVSPVQADLGPEAHVEAVRASARLLARRERWERAVKTMNELERYCGRKGLWAQQAECLMLGAHWRLDACPQSPVPALSPALRCLALCEKFALDHLHAEAAFALGRVN 808
[Close]
BLAST of mRNA_H-paniculata_contig21242.5569.1 vs. uniprot
Match: A0A7S4E887_9STRA (Anaphase-promoting complex subunit 5 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E887_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.130e-9
Identity = 57/164 (34.76%), Postives = 80/164 (48.78%), Query Frame = 1 
Query:  268 PGVECVFETALLLMLRQHEAFPHPVTNIWAGGVMVLLHEWMVNRGELAAAEGLGMSLRGCCPLSRG--AEAFVEAGLQRVRLLRAQRRWHEAVKSASALAKLSDARSLAPQYARALLELSHVRLDAEPTSPVGALPHALRCLAVCESYSLDAIHALAMIHLAEV 753
            PG+   ++ AL   L ++       +NI      +L  EW V+R  L  A  L  +L G  P       E  VEA    +RL  A+  +  AVK A+ L ++   R L    A+ L + S   LD  P  PV A+  ALR LA+CE ++LDA+HA A + LA V
Sbjct:  640 PGLNVAYDIALK-KLEENRCPNKGASNIVERAQYLLRFEWAVHRHALRRAAALHEALLGVSPRQSDYDVECHVEALRCDLRLSVARDDYERAVKGAAKLERICGNRGLWALQAKLLCDRSKWLLDGCPQEPVPAMNPALRALALCEQWALDALHAEATLRLALV 802
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21242.5569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KKY0_9PHAE8.230e-9264.55Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
D7FTQ0_ECTSI2.580e-7256.86Anaphase-promoting complex subunit 5 n=1 Tax=Ectoc... [more]
F0Y6Q2_AURAN5.270e-1641.43Anaphase-promoting complex subunit 5 n=1 Tax=Aureo... [more]
A0A7S4E887_9STRA4.130e-934.76Anaphase-promoting complex subunit 5 n=1 Tax=Pelag... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21242contigH-paniculata_contig21242:1959..4311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue2.4e-64
Seed eggNOG ortholog2880.D7FTQ0
Preferred nameAPC5
KEGG koko:K03352
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04657,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04657,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016567,GO:0019538,GO:0019941,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065007,GO:0070647,GO:0071704,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein K11-linked ubiquitination
EggNOG OGsKOG4322@1,KOG4322@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons4
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21242.5569.1prot_H-paniculata_contig21242.5569.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21242 1959..4311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.4757762-CDS-H-paniculata_contig21242:1958..21991622929566.4757762-CDS-H-paniculata_contig21242:1958..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 1959..2199 -
1691480917.0331469-CDS-H-paniculata_contig21242:1958..21991691480917.0331469-CDS-H-paniculata_contig21242:1958..2199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 1959..2199 -
1622929566.4897904-CDS-H-paniculata_contig21242:2445..25471622929566.4897904-CDS-H-paniculata_contig21242:2445..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 2446..2547 -
1691480917.0435495-CDS-H-paniculata_contig21242:2445..25471691480917.0435495-CDS-H-paniculata_contig21242:2445..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 2446..2547 -
1622929566.502836-CDS-H-paniculata_contig21242:2994..33321622929566.502836-CDS-H-paniculata_contig21242:2994..3332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 2995..3332 -
1691480917.0552666-CDS-H-paniculata_contig21242:2994..33321691480917.0552666-CDS-H-paniculata_contig21242:2994..3332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 2995..3332 -
1622929566.5171773-CDS-H-paniculata_contig21242:4227..43111622929566.5171773-CDS-H-paniculata_contig21242:4227..4311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 4228..4311 -
1691480917.062788-CDS-H-paniculata_contig21242:4227..43111691480917.062788-CDS-H-paniculata_contig21242:4227..4311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21242 4228..4311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21242.5569.1

>prot_H-paniculata_contig21242.5569.1 ID=prot_H-paniculata_contig21242.5569.1|Name=mRNA_H-paniculata_contig21242.5569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
QRLLVEAAAFERFGYSDMAFTCARCVLQIQAEFARSSDMEVATTCAINAV
LRGKHLSVNYLRPPKTRALPPAAAAATGAEERWTGARKEPGVECVFETAL
LLMLRQHEAFPHPVTNIWAGGVMVLLHEWMVNRGELAAAEGLGMSLRGCC
PLSRGAEAFVEAGLQRVRLLRAQRRWHEAVKSASALAKLSDARSLAPQYA
RALLELSHVRLDAEPTSPVGALPHALRCLAVCESYSLDAIHALAMIHLAE
VSERV
back to top

mRNA from alignment at H-paniculata_contig21242:1959..4311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21242.5569.1 ID=mRNA_H-paniculata_contig21242.5569.1|Name=mRNA_H-paniculata_contig21242.5569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2353bp|location=Sequence derived from alignment at H-paniculata_contig21242:1959..4311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGCTGTTGGTGGAGGCTGCAGCGTTCGAGAGGTTTGGGTACTCTGA
TATGGCGTTTACATGCGCGCGTTGTGTGCTGCAGGTGTGTGGTGTGTGGT
ATGTAGGTTGGGGAATTGGTTTTTGTACGATGTTGTTGCTGTCGTTGTGG
TAGTGGTAGTAGTGGTAGTGGCTTCTAACTTGGGCAAATGATTGTATGTT
GCAAGTAGTAGCTTGTACTGCTGTGTTGTACTCGTGAGATAATGTGCAGC
TCTAGTTTTTTGGTCGTGGAAATTGCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTTTCTTCGTATCTCAGTCTGTCAGTGTTTCTGTCTGTTCGTC
TGCCTTTCGCCTGAAGAATTGAACCCGAAGCAGCAATGTAGCCAGCAAAC
CACCGTGATTACACACCCAAATCAAACCTAACTTAGTCTCTACAGCACAC
TTTCCTCCAACACCTCGACTTCACCTACCGCTCGCATCACTAGCGAACAT
CCAACACTCGTCCGTAGTACTCTCGTCCCTACGTGGCCCAGTCAACGGCA
CGAAACCAAATTCAAGCCCACACCACTCCATCCCACCCCCATCCACGCAT
CCATCCTCCCTTGGCTTGGTCGGCTCGTAGATACGTACGTAGTCCAGTAG
CACCGTCAGCTCTGAGAATACCTCCGATTTATTGTTACGACTATTTCTAT
GTATTTTTTCACGTACATGGTTGAGCTTTTGATGCCTGATTTGATCATGT
TTTGCTGGTAAGTTTACGCAACCAAGATTTGACGTTACGTTGCATACATA
ACATGAACAGGGGTACGTTGGGGTTATTATATGATTTTGATAGAGCTATT
AACTGCGGCAAGTGGCTTAAATCATGAACGTGATTTGGTGGGTTCAGTTA
GTGCTTTATTTCGGCATGCGCTTAGATGTAAGCCATATTGTACCGCTCCC
CCCCCTCGCCCAAAACAAAACATGATCAGATTCAGGCAGAATTTGCAAGA
TCTTCGGACATGGAAGTCGCCACGACCTGCGCAATCAACGCCGTGCTTCG
GGGCAAGCACCTCTCAGTCAACTACCTCCGTCCCCCTAAAACTAGGGCGC
TTCCTCCTGCAGCGGCGGCGGCGACGGGGGCGGAGGAGCGGTGGACGGGA
GCTAGGAAGGAGCCAGGGGTTGAGTGTGTGTTTGAGACGGCGCTGTTGTT
GATGCTGCGGCAGCACGAGGCATTCCCGCACCCGGTGACAAACATTTGGG
CCGGCGGGGTGATGGTGCTGCTTCACGAGTGGATGGTCAATCGCGGGGAG
CTTGCTGCCGCGGAGGGGTGAGTTGAGGGTGGGCAGCGGGGGCGGGGGCG
GTACACATCATCGTATTATTGGGGTGGATGCTGTGCTTATAAATGATGTG
ACTTGCACGTGAACACCTGACAGAAATGAAATACTTGGTTGAGTCATTCT
CCAAAAGCTACATTCACAAGTCAGCCAGCTAGCTCACTTGCCTCAGATAG
TAAGTCTATAACATACAGCTGAGACAAAAAAAATCGTAATCTATACCCGT
AGGTAGGTAGGTGGGTTGTGTCGCTGACGTCAAATCTAGGATGTGTACAC
GTACCAGCAATGGTAGATGAAATGGAGGATTTGTAGATCGCGCCTCAGCA
TGTATCGCATTTTCACCCCTCTGACCATTGAGCCGCTCGTGTGAGTTGGT
CATATTCTCGGTTGACGCTGCGTTGTTTTTGCGATTTTCAATTGCGTGTG
AATACCGTGAGCAGCTTGGGCATGAGTCTTCGTGGATGCTGTCCACTCAG
TCGAGGGGCCGAAGCTTTCGTCGAGGCAGGCTTGCAACGTGTTCGACTCC
TCAGAGCCCAGCGCAGGTATGGTGCGGTGCGTGCTGTGTTGTAGGGGTGA
GGGTGAGGTGGGAGAAAGGATGTTAATTTTGTCCGCGATTTTTTTTCTCG
ATTTTTCATCGCGTTTCCCTTCTCGCGATAGGTGTATTTTGCACGTTTAA
CTAGCGAAAATTAGGTGCACATACACATATCATGTTCGCCACTAATCGGG
GTGAAACTCTAGCGATTTTTATAATGAAAACCTGCTCGCCCCTTTTCGCC
TGCTGCATGAAGGTGGCATGAAGCCGTCAAATCTGCGTCCGCTCTGGCGA
AACTCAGCGACGCCAGAAGTCTCGCCCCTCAGTACGCCCGAGCGCTGCTG
GAGCTGTCCCACGTCAGGCTCGACGCGGAGCCGACTTCTCCCGTGGGAGC
GCTGCCGCACGCGCTTCGGTGCCTTGCGGTGTGCGAAAGTTATTCGCTAG
ATGCAATACATGCGCTGGCGATGATTCACCTCGCGGAGGTGAGTGAGAGA
GTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21242:1959..4311-

>mRNA_H-paniculata_contig21242.5569.1 ID=mRNA_H-paniculata_contig21242.5569.1|Name=mRNA_H-paniculata_contig21242.5569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig21242:1959..4311- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGCTGTTGGTGGAGGCTGCAGCGTTCGAGAGGTTTGGGTACTCTGA
TATGGCGTTTACATGCGCGCGTTGTGTGCTGCAGCAGCGGCTGTTGGTGG
AGGCTGCAGCGTTCGAGAGGTTTGGGTACTCTGATATGGCGTTTACATGC
GCGCGTTGTGTGCTGCAGATTCAGGCAGAATTTGCAAGATCTTCGGACAT
GGAAGTCGCCACGACCTGCGCAATCAACGCCGTGCTTCGGGGCAAGCACC
TCTCAGTCAACTACCTCCGTCCCCCTAAAACTAGGGCGCTTCCTCCTGCA
GCGGCGGCGGCGACGGGGGCGGAGGAGCGGTGGACGGGAGCTAGGAAGGA
GCCAGGGGTTGAGTGTGTGTTTGAGACGGCGCTGTTGTTGATGCTGCGGC
AGCACGAGGCATTCCCGCACCCGGTGACAAACATTTGGGCCGGCGGGGTG
ATGGTGCTGCTTCACGAGTGGATGGTCAATCGCGGGGAGCTTGCTGCCGC
GGAGGGATTCAGGCAGAATTTGCAAGATCTTCGGACATGGAAGTCGCCAC
GACCTGCGCAATCAACGCCGTGCTTCGGGGCAAGCACCTCTCAGTCAACT
ACCTCCGTCCCCCTAAAACTAGGGCGCTTCCTCCTGCAGCGGCGGCGGCG
ACGGGGGCGGAGGAGCGGTGGACGGGAGCTAGGAAGGAGCCAGGGGTTGA
GTGTGTGTTTGAGACGGCGCTGTTGTTGATGCTGCGGCAGCACGAGGCAT
TCCCGCACCCGGTGACAAACATTTGGGCCGGCGGGGTGATGGTGCTGCTT
CACGAGTGGATGGTCAATCGCGGGGAGCTTGCTGCCGCGGAGGGCTTGGG
CATGAGTCTTCGTGGATGCTGTCCACTCAGTCGAGGGGCCGAAGCTTTCG
TCGAGGCAGGCTTGCAACGTGTTCGACTCCTCAGAGCCCAGCGCAGCTTG
GGCATGAGTCTTCGTGGATGCTGTCCACTCAGTCGAGGGGCCGAAGCTTT
CGTCGAGGCAGGCTTGCAACGTGTTCGACTCCTCAGAGCCCAGCGCAGGT
GGCATGAAGCCGTCAAATCTGCGTCCGCTCTGGCGAAACTCAGCGACGCC
AGAAGTCTCGCCCCTCAGTACGCCCGAGCGCTGCTGGAGCTGTCCCACGT
CAGGCTCGACGCGGAGCCGACTTCTCCCGTGGGAGCGCTGCCGCACGCGC
TTCGGTGCCTTGCGGTGTGCGAAAGTTATTCGCTAGATGCAATACATGCG
CTGGCGATGATTCACCTCGCGGAGGTGAGTGAGAGAGTGGTGGCATGAAG
CCGTCAAATCTGCGTCCGCTCTGGCGAAACTCAGCGACGCCAGAAGTCTC
GCCCCTCAGTACGCCCGAGCGCTGCTGGAGCTGTCCCACGTCAGGCTCGA
CGCGGAGCCGACTTCTCCCGTGGGAGCGCTGCCGCACGCGCTTCGGTGCC
TTGCGGTGTGCGAAAGTTATTCGCTAGATGCAATACATGCGCTGGCGATG
ATTCACCTCGCGGAGGTGAGTGAGAGAGTG
back to top