mRNA_H-paniculata_contig2116.5539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2116.5539.1
Unique NamemRNA_H-paniculata_contig2116.5539.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2116.5539.1 vs. uniprot
Match: D8LJW2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW2_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.160e-82
Identity = 127/196 (64.80%), Postives = 155/196 (79.08%), Query Frame = 1 
Query:   91 FCVEVVAFPQSSPKSPGVPFRTYCDPSARRSAARGVAVAPVPGDEGQQGCAGTSSAGLPSYMSSLLPIRFTNEKVQLSEGTSFRIHLDADWLETDVIIVEFRLMYRPLPDSTSSGVESDPAPSEETPPPE----ALKQVGKVTLHAKCASAKGGLHRYHPLVFPQPYLCLLDVTFHMALTAINHPGGPAGIASAIA 666
            F VE V FP S+P +PGVP RT+ DPSARRS ARGV V P  GD  Q+G +G S+AGLPSY SSLLPIRFTNE+VQL+EG  FR+H+DADW+ETDVI +EFRL+  PLP++ ++  E   A +  T  PE     LK+VGKVTLH KCAS+KGGLHRYHPLVF QP+LC++D+T HMALT++NHPGGPAG+A+AIA
Sbjct:   14 FGVEAVVFPVSNPYAPGVPVRTFHDPSARRSTARGVLVNPAEGDVDQRGSSGISAAGLPSYTSSLLPIRFTNEEVQLNEGCLFRVHIDADWVETDVIAIEFRLLTTPLPENDAAPTEDVIAAAGATVTPEKKPITLKEVGKVTLHTKCASSKGGLHRYHPLVFKQPHLCVVDITLHMALTSVNHPGGPAGLAAAIA 209
[Close]
BLAST of mRNA_H-paniculata_contig2116.5539.1 vs. uniprot
Match: A0A8J2WP39_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WP39_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.020e-6
Identity = 49/208 (23.56%), Postives = 90/208 (43.27%), Query Frame = 1 
Query:   28 TVELLLHIHSFKNIDLRSRGHFCVEVVAFPQSSPKSPGVPFRTYCDPSARRSAARGVAVAPVPGDEGQQGCAGTSSAGLPSYMSSLLPIRFTNEKVQLSEGTSFRIHLDAD-------WLETDVIIVEFRLMYRPL-----PDSTSSGVESDPAPSEETPPPEALKQVGKVTLHAKCASAKGGLHRYHPLVFPQPYLCLLDVTFHMAL 615
            T+++++H+H F+N+DL SRG + V      + + K   +P   Y  PS   +  R   +      +        SS+    + +    I++ +E+++L+EG  F++ ++A        +   + I +   L+   L     P S +S   S    +E+        +V   TL  +       +H Y P+ F   + C LDVT H AL
Sbjct:    6 TLDVVVHLHRFRNVDLFSRGIYMVRAAV--KCNTKQ-AIPHGCYSKPSVLSTFVRDQEIPQTHASDLPAAQVVDSSS---EFSTRAFVIKYRDERLELNEGAQFQLLIEAKDSGDRLIFANDEPIDITLELLMAELEKPGSPPSRTSPRRSSAVAAEKPSLSPTFSRVATQTLRVRRDPTTNQVHAYFPVTFSSMHFCQLDVTVHCAL 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2116.5539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJW2_ECTSI3.160e-8264.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A8J2WP39_9STRA2.020e-623.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2116contigH-paniculata_contig2116:3737..13614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_009890.1
Exons5
Model size666
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2116.5539.1prot_H-paniculata_contig2116.5539.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2116 3737..13614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.4831362-CDS-H-paniculata_contig2116:3736..38221622929562.4831362-CDS-H-paniculata_contig2116:3736..3822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 3737..3822 +
1691480915.1220884-CDS-H-paniculata_contig2116:3736..38221691480915.1220884-CDS-H-paniculata_contig2116:3736..3822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 3737..3822 +
1622929562.5000663-CDS-H-paniculata_contig2116:11307..115271622929562.5000663-CDS-H-paniculata_contig2116:11307..11527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 11308..11527 +
1691480915.1384547-CDS-H-paniculata_contig2116:11307..115271691480915.1384547-CDS-H-paniculata_contig2116:11307..11527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 11308..11527 +
1622929562.5120914-CDS-H-paniculata_contig2116:12059..122451622929562.5120914-CDS-H-paniculata_contig2116:12059..12245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 12060..12245 +
1691480915.1485188-CDS-H-paniculata_contig2116:12059..122451691480915.1485188-CDS-H-paniculata_contig2116:12059..12245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 12060..12245 +
1622929562.5261006-CDS-H-paniculata_contig2116:12730..128471622929562.5261006-CDS-H-paniculata_contig2116:12730..12847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 12731..12847 +
1691480915.157499-CDS-H-paniculata_contig2116:12730..128471691480915.157499-CDS-H-paniculata_contig2116:12730..12847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 12731..12847 +
1622929562.5426953-CDS-H-paniculata_contig2116:13557..136141622929562.5426953-CDS-H-paniculata_contig2116:13557..13614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 13558..13614 +
1691480915.1702356-CDS-H-paniculata_contig2116:13557..136141691480915.1702356-CDS-H-paniculata_contig2116:13557..13614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 13558..13614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2116.5539.1

>prot_H-paniculata_contig2116.5539.1 ID=prot_H-paniculata_contig2116.5539.1|Name=mRNA_H-paniculata_contig2116.5539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MSDGGGARATVELLLHIHSFKNIDLRSRGHFCVEVVAFPQSSPKSPGVPF
RTYCDPSARRSAARGVAVAPVPGDEGQQGCAGTSSAGLPSYMSSLLPIRF
TNEKVQLSEGTSFRIHLDADWLETDVIIVEFRLMYRPLPDSTSSGVESDP
APSEETPPPEALKQVGKVTLHAKCASAKGGLHRYHPLVFPQPYLCLLDVT
FHMALTAINHPGGPAGIASAIA
back to top

mRNA from alignment at H-paniculata_contig2116:3737..13614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2116.5539.1 ID=mRNA_H-paniculata_contig2116.5539.1|Name=mRNA_H-paniculata_contig2116.5539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9878bp|location=Sequence derived from alignment at H-paniculata_contig2116:3737..13614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGATGGAGGTGGTGCAAGGGCGACCGTGGAGTTGCTCTTGCATAT
CCACTCCTTCAAGAACATTGACTTGAGGTCTAGAGGGTGAGTGCAACACG
AGAATGCTGCCCTGGACGGATATGCGACTTCGTGTCCCTACTGTGGTGCG
AAGGCAGTCAGTACAACAGTTATTAATAGGAAAAGACTAGTTATTGTGTG
TGTCTTTTCGAAAAAAATGCTCGGTCGGAGATTGGACATGAAATGGTCTT
GCGTATCAAGGTGAAGAGGGCTGGTCGGCTGCCTCTCGTAGATTGTTCAC
CCGCGGCATTTATCGTTGGCCAGGCCCCTCTGAGAAGGAAGATCATGATC
CCCCCCCCCCCCCCCACCCCATCGTATTGCTCATGTTCACGTAGCGTCGA
TCGGATAGGTTGAAGAGGGAGGCATAAGTCGCGGATGCTAGATTCTCGCA
TCGCATCATCTTTTGGTCGCTTGTCCGCCTGTCCCTCTGTGACGTTGAAA
ATCAGAGCAAAAACAATTGTCGCCTGTCCTCACGAGTGCATGCACACCGT
CTGGCCTGTACGTTGGTGCGGAAGCCTTGTCCAGAAATTACGGTTAACAG
AATTGACCAGGTGTGTAAATTAATGACTGCGCTGTACTGTATACAGTCTG
TACGACCTTACGCGTTGAAGATGGGATCACGGCAGGTTCGAAGGATAGAG
GGGAGGGATATAATATCTCTCACCGCTTGCGCATCGCACCCTTAGATGCA
TGCCAATCATACTATTTGCGATTGATGTCACGTCATGGCGCGGGGCTATG
ATGCTTCTTTTTTTTTCGGAACTATTTGCGGTCGATTTTCTTCTGTGGGC
ATTCATGCACCTGGGAATGGCATGGCCTGACCCGGCGTCAGGAGCCGCCG
TCAGCCAGCTGTTCATGCAGTGCAATAATCAGTCAATAGACACTTTATAT
TACAACACCCACCCTGCTATTGAGGTTATCTCAAATTTCATTTTTGGCTT
GAGGTTCTCGGGATAGATGTAATAAATATACCAACCTATTTTTTCTTTTT
TCGGCGACTCGAAATTTTACGTGAAACTCGCTTTGGCCCTCTCAGACGTT
TGTTATTTAGACGTCTGATCTCTCTCTGACTCTCCATCACTGCAACCTGT
GTGTATAGACGTGGTAGCGTGAAGAAGAGAGTAGCCGTGAACGAAATGTG
CCGAGTGTATCGCTTTTGAGACGTATGCCATCATCTCTCATTGTTTCCTT
GCGAGCACGCTTCGTGGTGGCACCATAGCCTACTTCCCTTCTAAGCTCGC
TGGAGCAGGCACAAAATATATGTCTACCCCTTCATCGTCAACGGCTAAAT
TACATGCGCATAGGAGAAACAAAACCTTGTGGCAGAGCATGAACCGAGCC
CCTTTGGTGCACACCACAACTGAACTGTACTTTAGACTGTAGAATACAGC
CAGTACAAGACAGTACGGACCGTAGTCAACTTTGTACAAACACCCCGAGA
TCCTCTAGCGAAAGAAACCGATCCTGTCCTGATTGTCTATCCATTCAGAG
TCCGCCTCCAATCCCTGGATCTGCGACCACCTTGCCACCTAGATACCTCT
CTGGTTTTGGCATCAGCTCTAACATATGGATACGTGTATTTGCTAAAAAT
AGCAGAAGAAACGGTCGTGTACTGTTCATGATTTTTCTGGAAGGCTAGAA
GGACCAAGAATGGATCACATCATTTGGGATGGTCCGCGTCGCCAAGCATA
CCCTGGATGCTACGGTGAACGGCGCTATGCGGGGGTAATAAGGCGTCCTT
GTCAGTTCAGTGCTGGGTACTTTTGTGAGGACCACCTCTCCTTGGCTTTC
GTTTACCGCCATCATTGACTTTGACTCCCGCCATCCGTCAAGGCTTCTTA
CAGTCAGTACTCTGCTGCTGGTGTGATATGAACCGTCTCTCTACTCCTGC
TAACCATTTTTTCGGCAACACTTGGTATCTGTCCGGAAACTCAGAAAGTT
TTTCTTGAAAATTCTTGCAACTCAACTAAATATTCATATCCACAATTTGG
AAAAAAGAAAACCATACGAAAACCCCGAGATACTTTGCGCAAAAAGAAAA
AGCGCAAAGTATTTCGCACTCCTAGTTGAACTCGGGTACCTGCACATGTT
CAAAACCGATTGCGCCAAATATTTTGCAGCTTTTTATTTATTTTGGTCGT
GGTCGTCAAGCCATGGCTCCGCTTATGTAGTCATACTCCAGAGTGTTGTC
CTCGATCGGCTTGATGGGCTCGCAAATAACATGGGCAAAATGTCTCGTGA
AGATTGGATTTCAGAAGTCACTTGATTACAGATTTGAAAAATTGTACTGG
AATCTGTAATAAAAACATGATTATTTTACCATATTGTTCGTTGAAGAACG
ATAATAAAGGAGACGCCTCAAAGTTTTCGCGAAAAGGCAGGGCAGCGGGC
ACCACTCGCTAAAGTTCGAAGAACCTATTTAAACAGATTTAGCCCACCAA
AACGCAAGGCGCTGACCGAGCCTCGTTTTGTCGTGGTATGATACGATACC
ATGTAGTCAAAAGGTCTGCAGAAACACACTTTTTGTGGACATTTCACTTC
ACTGTTGAATTTTTTTTTTTTATCAAATCGACAGGAGTGATGAATTATTA
TAGTGCGAATATGTCGCTTTTTTATTTTTTATTTTTTTACTTTTCACTGA
GCTACACGCTAAGTTGTTTGTTAGGTATGCTGCTTACTGCCTTGGTCCTT
TTTCCAATGATTTTAGGTCCAAATTTGAACAAGGATATGCTGACATGAGA
GCGTTCGTGCAAAATGAATTTCTCTTGTAATTTTTGGTCTGGTCGAGTAT
ATGGAATAGTGAGCTCCTCGTCCCGGTCCCTACTGCACCTGCATCAACGT
CTCAGTGCAAAACGAATTCCTTGCCACGACCAGTGACTACGCCTATCTCT
CTCTCATGGAATATACGAATTTTTAGAAAGAATTATCTTACGTAATGAGA
AAGAGACGTTGGTGCGGGTGCGCTGGGCTCAGGAGGCTGTATAACGATTA
GCAGCTCTGTCAGCTATATATGACAAAATCGAAATGCGCAAAATAAATTC
ACTTTGCGCTAAGCCTTAGGCCATCTCTTATGGGGTCGGATTTTCGCAGT
CGAATACAGATTTTAGAATTTTTCGACTTGGAGAAATTCGATTTCCCATG
TTATACGGTTGGATTTCTTGTAAATCTGAGTTGAGAAACCCGATACTGGA
GATACAGCCGGTCCCGTTCCCCGATTTCTGGCAGAAATCAGAATTGCCTT
CGCGTATCGGATTTCTTGGAGTACCACCATATGAAGGCGTTAATATTTTT
CATCCAACGTTTGAAATATCACATCCTATAGCAATAGACAACCGCGAGGA
TGCAGACAAGCCAAGGTGTGTGACCCCCGCCGCCGTATAAAACTTGCGGG
ACTGCTAGCCCGGGGGTTTCCTCCACCCAGCGGAGGAAGCTGTGAACCGC
GATCTTATCGTACAATTCTACCGCGGCCTTGTTCCTGTTGGCCTGAGACA
TGGTCCCACCGTTCAGCTTCAGACCAGTACAAGCGTACCACAGTGATACA
CTCTGCAGTATCATCCACTGTACCTTCCTGACAGCCGATTGAATCCCCCG
AGCCTTCATCTCACTCCACGCATGGGCTTGTCGTAAGATGCATCGCAGTT
GACGGTACACTCCCGATCATGTGCTCTTCAAATTGTGATGCGAGTGTTTG
CTGGGGGGTGTGGTGAAGGGTGGCGTGTACGAGGGTGATGTCTTGGGTGG
TGTGTTCGAGGACCCAATGTTGGAGGGTGTGTTTTGAATTATGAGTTATG
CCGGTTGTAGTACTACGCCTGCAAAGCTCCATAAACAACCACCTTCGGGA
AATCCGACCCCATAAACAAACGCGAATCGAAAATTGAAGATAACATTTTT
GCACCCTTCGAGAAATCGGAAAAGTAGAGAAATTAGACTGGAATATCCGA
ATCCATACGAGATGGGCCTAATACCTCATTAAAATAGGCGCATATATTTT
TTTCGAGTTTTTTCGAGTACAGTCGTTAGGCGCCGAATTTTTTCTGCGAT
ATTTTTTTTGCGTTTTTATTTACATTTCGTACCGGCGTCGACGTTTTGTA
CCGAAATTTCAGAGACAGTAGAAATTAGCATATGATACATACACACAAAG
CGATGTCCTTTTTTCTTTTTTTTCGAGTCTTCAATATGAATTGAGTTGAG
CGCTTACCGGTCGTCGCGGTTCTTGCGTCTATAACTTCCGGAATTGCTTA
TGTTTTGATTTCGTCTTGTTTTTTAACCCGTGCCAGATTACATTGTGCAC
AATGCCTTCCTTTCGCATTTTTGAATTTTCAGAAAAATTGGTGCGCTAGA
GTCGAAAGACAGTGTTTTTGGCGATATTTGACCCCCTATTGCAAGGTCCT
GTCTGATTCACTCGAGATTTTTTTTTTTTCGGGCTTTACGTTGTATCAGC
GTTGATACTTGGTCCCAAACTTTCAGAGACAATGGGAATTGGTGTAATGC
ACAAAATGGTGTCGGGAATTATTTCGAGCGCTTAAGAGTGCATGAGTTAA
GGGCATACCGTTCGTCGGAGGTCTTCCGCTATATGCTCTGGAACTGCAGG
TGTATGTCTTTTTTTTTTTTTTTTAACCCGTGCCGAATCATGTCGCGCAC
AATGCTTAAGCGTTTACATTTTGAAAAAATTCAAAGTTGGTTGCGCTAGA
GAAAAAAAAAAAAACGTGTTTTTAAGGGGTGTTAACTAACTCAATTAGTC
CAAAAAGAATATATATATATTTTCTTTTGTAGAGCTACGGCATTCAAAAA
TTGTAACACATGTCATATGGGTGAACTAGTCCCTATGCCAATATCTAGCT
ATCCCAATACGTTTCAGCGGATTTGACGTAAATTCGAGTGTACTTCGCCG
AAAGTCTGATAATATAAATTTGGCCCTTGACCACTGTATCGTGTTGTTCT
TTCTAGTCCATGTTTGGTCTGATCACTGGAGGGTATGTATGGTGAGCTGT
GTAGTGCACAATTTGATTTTAGATGATATTTTAGACGAAATTTTGTGCAA
GTGTCGGCCTTACCTGTCACGTGAGACCCTTTCCGATAGGATCCCTGGAT
ATTTCATTTTTTATTCAAGTAATTTATCAAGTGGAGTACGAGGTTTATTC
CGAAATATGTGGTGATTTCGGGTTGGCTTACTGGGTCGTGTAGGCGAGCT
GGCACGCCTCTTTTTATGCTATGCAAGTGCTACTGTTTGTGTGTAGCTCA
CCCGCGCAGCAACGCAGGGTAGGCAATCAATGCTGCAGCACCATCTTGTG
TGACAATGTGCCGTGTTCGTCTTGCATGTATTCAGAATCCACCCGACATA
TATCCCTCACATGACCCATATTTCGATTGCGCCGACCCGCAGCATGTCTT
TTTTTTTTTTACAAATGATAACAACTGATATACTGTGAAGTGCTGATAAT
GAAATAGAATCCCCCTGCCCCCCCCCCCTCCCCCCCTCCAACGTCCTCTT
CGTAGTTATTAGAGGTGTGATTCAAGCCCTGCCTTCAGTGACACCCGTGT
GTTATCTTCAGATTAATTCTGGGTTCCGAAGTAATAGTCATCCTTGCGGC
GCCCAAATGGGTCAAGTGGGAGATTTTCGATACTCCAATTAAGGACCGCG
CTTTTATCGGCGTGTTGAGTCGAGCGATATGAGAGTAGGTACCTGTTGCA
CTCTCGGCGCTTGCAACCGCGTTAAATTATTCAAGCCTTTTTAAATGAGT
GGCAAGTTCTCATATGATTGCCCGCGAATCGATCGGAAAAGTAGTAGTTT
CGAAACAACCATCCGTGAACCAACCGGCAAAAACAAATTCTCTTATAGAC
CATCGGTGAAATGGCCAAAAAAAAAATGGCTCAAGTGACCATCCGCCAAA
CTGTTTTTAACATAGAGATGTGAACAGAAAACGCGTAGTACCCGCTAGGG
TACACGTAAAGTTTCTCGGATTAGTGACGGGTTGTGAGTCACATCAACAT
GAGTATTGCTTTGTGATTTGGAATCCCAAAGGTCGGCACGAGGTGCTGCG
AGGTGACTGTTTTCCTTGTCTGTCAGGTTATCGGTTTAGTTTGCATTTGA
GTAGCCCTTGTAGCTCCCAATGCCGTGTTGCAACAGAAAGGGCACCTGAC
AGTCCCGCATGGGGGGGGGTGAGGCTGGTAGCTTTTTAGGCTTAATAGGA
GTGCTGGATCAAGACCGCGCCCGTGGCATTGATTCAGGCTAATCATGCAC
ACTTCGTTTCCCATACATTCAGCAGAATGTTTTTTCGACCATTAGAATAT
ATTCTCCGACTTAATCCCACATGGGTGGTGACGGGGCCTTAAAATAGTTG
TGCAATACGCAGGTCGTTGTCTAGGTTGCATACGTGAATATTTGTGGGTA
ATTTGCACGGTACTGGTCGTGGTGTCGGGGCACACGGCTATGATCGTGCT
TTGTGCTTTGTACTTTGCCCTGATGCACATTTAGTCATTCTCCATAGCCC
GTGATCGACCCAACACAACAGCTCGCTGCGCTTGAGGCGGACCCTGCAAT
CGCACGCAGAAACAATGTCCATGATGGTTCCTGTATACAAACTTGCTCAA
GGGTAGGTTTGAAGAACTGATTCGAGATGATCATTGCCATCAATTCGGTG
GGCCGTATATAATGTACAACAGGAATGGCACAAAATTCTAGGCTCACACT
TTTTTTTTTTTTTTTGGAGAGCTTCTTGTTTATATCTCCCTGGACAAGTA
AATTATTATTTAGTTGTACGTGTGTCCAATGGGGGATAGTTGATTTCAAT
CTAGAGTAAGTCGAGGTTACGATTTTCACGTATTGAATAGATTTTTATTC
ATTTTTTTTTTTTTTCAACATTTTAATTGCAGTTGTAGGTGATGCTTGTT
TTTTACCGCTCTGGTAACAGCTCTAGAGGTTTCAAACTGAGGTAATCACT
AAGCAAATAACATGGAGCGCATTTCAGTTAATGTTTGATGTATGAGAGTT
GCCAATTAACCTTCAAGTATTGTTGTCTGTACGCCCAGAATTGATGAAAT
CAATAGTCCGGAAGGTGGACTCCCCTTGGTCTAGTTTAGCTGTCGAGTAA
AACACAATTAAATAAATCCCGTTTGCTGGTATAATTTGGCTGATAAGTGT
ATACCCCCCGAAGTTTGTAGCCAGCTGTATAGCCTTAATGAGATACACTG
GAATTATTTTATGAGCTTCAGAGCTATAATTCAACCAACCATGGCAAGGT
TCACTTACGAATGGGAAAATTCCACTTGGTAAATCAGAGAGTATTAAAAA
TCCTGTTTTTTCCATTTGTTTTTTCTGATAAGTGTATACAACTGCAATTT
AAACTCAGCTACATAACTTCAACATGAGTACAATGGACTTTTAATATGAG
GTTCAGAGTTATTGTTCAACTGACTATGGTTGGGTCATTTGATATTTTAC
TAGAACAACGAGCATTTCAGTTAGCAAAATAATCCCTCTGTCCTTCCGTC
CGTCATTGTTCCTCCACGAAGGCACTTCTGCGTCGAGGTGGTCGCCTTCC
CTCAGTCGTCGCCGAAGTCCCCAGGCGTGCCCTTTCGCACCTACTGTGAT
CCCTCGGCACGGCGCTCGGCTGCCAGGGGGGTGGCGGTCGCGCCCGTGCC
GGGGGATGAGGGACAGCAAGGATGCGCCGGAACGAGCTCGGCCGGGCTGC
CGTCGTACATGTCCAGCTTGCTTCCCATCCGGTTTACAAATGTAAGGGTT
TTTCCGTTGTTGCCGTACATGGAATCGGGGGCTACGCCGAGTATCGATTG
GGCCTTTACGCCAAGAGGGTATGGTTGACCAAGTGGGCTAGTTACGAAAT
TTCGTCTCGAGATGAGAACACGAAAATAAATCCCAGCTAAATACGTTCTC
CAAGTTAGGATTTTGTTGAATCAGTACGAGTTAAAACTTAGGGATTAGAA
ATGATATGTCGCAATTTTGTAGGTTAAGACCTGTGGGTGGTACATATCGC
CTGATGGTGACAAACTGTACGTGGGTTGATACATGCGCGTTGGAATCGCA
ATAATTTCACCTATGACCGCCGAGAATATCTCGTAGTAAGAGAAAAGAGG
GTTGGTGGAAACGCGCATTGCGATCATAATGGAAAATGGGCGTTTACATG
CGGTGAAGTCTAAACTGGACGGGTCGGCTGTTTGAGGAGCAAAGGGTGCA
CCATACGTACAGCCTACACCAGTCTTATCAAAAAGCTTTTGTGCAACCTA
CGTGCTACCTGCCCTTAATACAGGAAAAAGTCCAGCTGAGCGAGGGCACG
TCGTTTCGCATCCACCTTGATGCGGATTGGCTGGAGACTGACGTCATCAT
TGTTGAGTTCCGTCTCATGTACCGACCGCTTCCCGACTCAACTAGCTCCG
GGGTGGAGAGCGATCCAGCTCCGTCTGAAGAAACACCACCACCTGAGGCA
CTGAAGCAGGTACACAAGGTAGCCGTAGATAAGGTACAATACTGCGGTGT
AGGGCAAAGGAATTGGAGCAGTAAAACCAAAGGCACAGTTGTTGTTCTTG
ACATGGAGAAGATACAAGATATCACAGACATGGCACATGGAGTACAGAAG
CACATGCCCGTACACCCGTCCTGCCCACCGATGAAATCGGGAAGAAGCAT
GTTCTCGTGGTTTGGGCGTTCAGCTGGCGTTCAGTTGTGTCCATTCCCTA
TCGCGATTGTTGTGACGGTGTCAGTCATGAATCTGCTTCTCCCGGTTGCT
GCTGCAGTGAAGACTCCGGAAGTTGTGGCCGTCAAGGTGCTAGTCGTTTG
CCTCCTATTTAATGTCGTAGAGCTAGACGACTGAGTTAACAGCCCTATGT
CTGTTATGGTTAACTAACTCAGTGTCATATCTGGCGTTTCCGCCGTTTGT
TTATCGGGGGGGGGGTTGTGTACTTTCTCATGTTATGTCCACAGGTGGGC
AAGGTGACTCTTCACGCCAAGTGTGCGTCCGCAAAGGGAGGGTTGCACCG
CTACCATCCCCTGGTTTTCCCGCAGCCGTACTTGTGCCTTCTGGATGTTA
CGTTTCACATGGTAAGCTTTGGTGGGGCGATTGATTTGAAAGCGGGCCTT
GGGTGTCAAGCCTTTGCGAAAAGTGGTTGCTTTGAAGATTTGGAGATTTG
GAAGGTTCCTGGTGTTTTACTGGTTTTTTTCGACCCATCTCTCTTATCTT
TCCCCTACTGTGTTATTCGTTGGCGCTGATGACTATAGTTCCCTCCCACA
TACCTCGGCACTCATACACAGACACACGATTCTGTATCTTGAACGGTACC
CTGTTTTTGCCAAATGTTGCTTTTCATGCCCTCTTTTGCGGTATTTCCCA
AGAGCATGTTTTCTGACGTGAGACGCGCGTGAGGTGAACAAAACACAGAC
GCACAAATCAACGAAAGCCGCCAAAACATGATGCCCTCGAGAGAGAGAGA
GAGAGAGGGAGAGAGAGCGGGGCGGGGCGGGGTCTAGAGGGAGCAACGCT
TGCTTTGGCGATAGTTTCAAAGTTTTGAGGGTGAACTGCGGAGCACGCAC
TGAGTTGCCTCTTGTCTTGTCGGGAACTGGTCAGCATAGGTCAGCAAAAG
TTAGACAGCTGTTCCGATAATGAGACAAAAATGCCTCTGGATGTTTTAAA
AATGGTCCGGGGTTCAGGAATGTCAGGGAACTGCCCCCTCTCCACAGTTC
CATCAACTGTGCACCAACCCTTCCTTCCCCCGGCGGCCTGTCATCTACGT
CTTCTTGACAAAAATTCACAGGCCCTGACGGCCATCAACCACCCGGGCGG
GCCGGCAGGCATAGCGTCGGCCATCGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2116:3737..13614+

>mRNA_H-paniculata_contig2116.5539.1 ID=mRNA_H-paniculata_contig2116.5539.1|Name=mRNA_H-paniculata_contig2116.5539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig2116:3737..13614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGATGGAGGTGGTGCAAGGGCGACCGTGGAGTTGCTCTTGCATAT
CCACTCCTTCAAGAACATTGACTTGAGGTCTAGAGGATGTCAGATGGAGG
TGGTGCAAGGGCGACCGTGGAGTTGCTCTTGCATATCCACTCCTTCAAGA
ACATTGACTTGAGGTCTAGAGGGCACTTCTGCGTCGAGGTGGTCGCCTTC
CCTCAGTCGTCGCCGAAGTCCCCAGGCGTGCCCTTTCGCACCTACTGTGA
TCCCTCGGCACGGCGCTCGGCTGCCAGGGGGGTGGCGGTCGCGCCCGTGC
CGGGGGATGAGGGACAGCAAGGATGCGCCGGAACGAGCTCGGCCGGGCTG
CCGTCGTACATGTCCAGCTTGCTTCCCATCCGGTTTACAAATGCACTTCT
GCGTCGAGGTGGTCGCCTTCCCTCAGTCGTCGCCGAAGTCCCCAGGCGTG
CCCTTTCGCACCTACTGTGATCCCTCGGCACGGCGCTCGGCTGCCAGGGG
GGTGGCGGTCGCGCCCGTGCCGGGGGATGAGGGACAGCAAGGATGCGCCG
GAACGAGCTCGGCCGGGCTGCCGTCGTACATGTCCAGCTTGCTTCCCATC
CGGTTTACAAATGAAAAAGTCCAGCTGAGCGAGGGCACGTCGTTTCGCAT
CCACCTTGATGCGGATTGGCTGGAGACTGACGTCATCATTGTTGAGTTCC
GTCTCATGTACCGACCGCTTCCCGACTCAACTAGCTCCGGGGTGGAGAGC
GATCCAGCTCCGTCTGAAGAAACACCACCACCTGAGGCACTGAAGCAGGA
AAAAGTCCAGCTGAGCGAGGGCACGTCGTTTCGCATCCACCTTGATGCGG
ATTGGCTGGAGACTGACGTCATCATTGTTGAGTTCCGTCTCATGTACCGA
CCGCTTCCCGACTCAACTAGCTCCGGGGTGGAGAGCGATCCAGCTCCGTC
TGAAGAAACACCACCACCTGAGGCACTGAAGCAGGTGGGCAAGGTGACTC
TTCACGCCAAGTGTGCGTCCGCAAAGGGAGGGTTGCACCGCTACCATCCC
CTGGTTTTCCCGCAGCCGTACTTGTGCCTTCTGGATGTTACGTTTCACAT
GGTGGGCAAGGTGACTCTTCACGCCAAGTGTGCGTCCGCAAAGGGAGGGT
TGCACCGCTACCATCCCCTGGTTTTCCCGCAGCCGTACTTGTGCCTTCTG
GATGTTACGTTTCACATGGCCCTGACGGCCATCAACCACCCGGGCGGGCC
GGCAGGCATAGCGTCGGCCATCGCGGCCCTGACGGCCATCAACCACCCGG
GCGGGCCGGCAGGCATAGCGTCGGCCATCGCG
back to top