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Homology
BLAST of mRNA_H-paniculata_contig21159.5537.1 vs. uniprot
Match: D8LNZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ3_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 1.800e-6 Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 2
Query: 284 SLAWLMACFVASLFVGMAQGKSGASSAEAYDTEAILSRAWTQSSELASATWGNTLEYVGVQ-SSMVYMALLGTVAVALLVCTLYVISRITDKDPYLYNKGKLGRLERQSVYNTSKKSC 634
S A ++AC +A+ G+ G +++ +T ++ A +A+A LE G + S + + +LG + AL+ TLY+ D+DPY++N GK+G+LE QSVY T+KK C
Sbjct: 7 SAAVMVACLIATFLAGL----HGVNASTGGETSGFMAFA----EGIATAARDKILECSGAEPDSHLPLIVLGAMGAALVAFTLYLTRLFFDRDPYVFNGGKMGKLEAQSVY-TNKKRC 115
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000510.1 |
| Exons | 2 |
| Model size | 1908 |
| Cds size | 381 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21159.5537.1 >prot_H-paniculata_contig21159.5537.1 ID=prot_H-paniculata_contig21159.5537.1|Name=mRNA_H-paniculata_contig21159.5537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MAQQHRFFFSLAWLMACFVASLFVGMAQGKSGASSAEAYDTEAILSRAWT
QSSELASATWGNTLEYVGVQSSMVYMALLGTVAVALLVCTLYVISRITDK
DPYLYNKGKLGRLERQSVYNTSKKSC* back to topmRNA from alignment at H-paniculata_contig21159:1256..3559- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig21159.5537.1 ID=mRNA_H-paniculata_contig21159.5537.1|Name=mRNA_H-paniculata_contig21159.5537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2304bp|location=Sequence derived from alignment at H-paniculata_contig21159:1256..3559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGTCACGCCGCGTCCCCTCGCTTTCCAGACATGTTCCCACACCAGAAA
GCGCTATCATTCCGTGAGTCTTCTCGTTGTAGTGAAGTCGTTGCTGTCAC
CGCACGCCGTCCTGCGCTACTAAAACAAAAACGGGCTGCCTCGGGTGTGT
TTCTTTGTTCCTCTGCGAAGTTCAAGTGTGAACGAGGGAGTATACTCCAA
AGGAGGATCGAAGGGGCTGCACTTCACTGAATACTTTCGCGACATCACAA
CCCAAAATGGCGCAGCAGCACCGCTTCTTCTTCAGCCTCGCCTGGTTAAT
GGCGTGCTTTGTAGCATCACTCTTCGTCGGTGAGTACTCACTACGCCCAC
TATACCATAACCCATGAAGTAGCCACCTTCCTCGGCTCATCTATTGCTGC
GTCGTCGTGACTTGATCGAGTAGAAGGGGTCAATACAAGCAAGAGCATAA
AGCCGCCATCCTCCCGTCAAGACTTGAAAAGCGTGCAACCGACATGTTGA
TCTAGAAGGCAGGACCAAACCAACACGCATTGCCCCACCAGTACCCGACC
CCTAGACACACTTATGTGCCACTCGACCCCCGTGCCCCCCCGTTCCAACC
CTTACTATCTGTCATGTCGTTTGCCGAACTGGCGCATCTACCCGGCAAGT
TTGGGGCCACAAACGCTTCGCTCCCCTGTCGCCATTTGTATTGAATGTAC
TTGTACCGATTTTTCAATGTATCAGGAATGGCGCAGGGCAAGAGCGGGGC
GTCCTCGGCAGAGGCGTATGATACGGAAGCAATTTTAAGCCGAGCATGGA
CTCAATCTTCCGAGCTAGCGTCGGCGACGTGGGGAAATACGTTGGAATAT
GTGGGTGTGCAGAGCTCCATGGTGTACATGGCCTTGTTGGGCACGGTGGC
AGTGGCGCTGTTGGTGTGCACGCTATACGTGATTTCACGAATCACGGACA
AGGACCCCTACCTTTACAACAAAGGAAAGCTGGGCAGACTCGAAAGGCAG
TCCGTGTACAACACGAGTAAGAAGTCCTGCTGAGGTGTTGTGTTGTATTG
TGTTTTGATTGGAAGATAGGTGTTCTGGTGAGTAGATGAGCTGTTGAACG
TTTGGGATTTGTGTACTTGGAATGTGTTGTTGGACGTGATGATGTGACTT
GATAACTGCTGTGTAAATGGTGCAGGGTGCGGCGGAACTCATCATGTTGA
CGGGGTCTTGCTGGTTTCCACCAAATGTTTTGTGTGATGTACAAGTGGTT
GCCTTACTGCGCAATGGCCCTCCCTGGTCGTGTGCCGTTTTCGTGACCCT
CTGGTGGAGATTGCGGAGTAATTAATTTTGTGGACTGGTGTGATGGGGGA
ACTATGAAAATTCTGGTGCCAACAGTGATCATTATGTTCAGTGTACTTCG
TGTTCGGTCTGAACGGTATCATCTGTTTCAGCACAACTTGTTTGGGAAGT
TGACTTGTGGGCCTATTTCAGTACTGTTTTTATGGACGATAATCTCCTGA
TCTTGTCAGGAGTCATTTTCGCGTACGTTCCCCAGACACAAATGGTGCCG
GTTTCACCTGGTTCAATACATACTGCAGTGTGTACGGATTCGGGGTTGGG
GTTACTGTCGGGTGAGATGTTAATAGGACGTGCCACCTGGTCGCCAGAAA
GGTTTCCTATTTGTAGAGGTCATGTAAGATTATAATTTTTTGTCACCCTT
CCTGTTGCCCCGAACAGGCGAGCTGCTTGTGCCGCCGACACTACGAACAT
GGCCATTCTGTGTCTAGATGTGTAATGAACGATGGGTACCCGCGGTTGGA
ATGCAATCACTGATTCACTCTCGGCCTACACGCCTCTCATTATGGTACAA
TGGTACACCCGTCCCACTCGTACGTTGACACCTGAATTGGCGATGGTTTT
CCCTGACAACTATCGTTTTCGTCGGCAATTCTGCCGCACATCTTCCTTCC
GCAAGGCCTTGTCTCGTCTGTGATCGTGAAAACTAGAATCTCAACGATCC
CTTTTCATCTTCCGCCTATCTTGTTTTGTTTCTTGCCGAGAGAAGGAGTT
GTTTCTGGAGGTTAAAAGTGCTGTGTACGACCTCAACAAATGTGTGATAG
GGTTGGGAACGAGACAATACTTGAGGAAATGCGACAGACGTGAAACAGTT
CCAAACCATGGATAGGAGTCAGTGTGCGTGCAATATATATATATATATAT
ATAAGCACATTATCAGCTAGGCACCTATGTTTGAGGTAGAACCGTTACAC
ATCTTGAAAAATATAATATGTCTACACCAGTTTAATCGAAGAGGAGGTTT
TCCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig21159:1256..3559- >mRNA_H-paniculata_contig21159.5537.1 ID=mRNA_H-paniculata_contig21159.5537.1|Name=mRNA_H-paniculata_contig21159.5537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig21159:1256..3559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAGCAGCACCGCTTCTTCTTCAGCCTCGCCTGGTTAATGGCGTG
CTTTGTAGCATCACTCTTCGTCGATGGCGCAGCAGCACCGCTTCTTCTTC
AGCCTCGCCTGGTTAATGGCGTGCTTTGTAGCATCACTCTTCGTCGGAAT
GGCGCAGGGCAAGAGCGGGGCGTCCTCGGCAGAGGCGTATGATACGGAAG
CAATTTTAAGCCGAGCATGGACTCAATCTTCCGAGCTAGCGTCGGCGACG
TGGGGAAATACGTTGGAATATGTGGGTGTGCAGAGCTCCATGGTGTACAT
GGCCTTGTTGGGCACGGTGGCAGTGGCGCTGTTGGTGTGCACGCTATACG
TGATTTCACGAATCACGGACAAGGACCCCTACCTTTACAACAAAGGAAAG
CTGGGCAGACTCGAAAGGCAGTCCGTGTACAACACGAGTAAGAAGTCCTG
CTGAGAATGGCGCAGGGCAAGAGCGGGGCGTCCTCGGCAGAGGCGTATGA
TACGGAAGCAATTTTAAGCCGAGCATGGACTCAATCTTCCGAGCTAGCGT
CGGCGACGTGGGGAAATACGTTGGAATATGTGGGTGTGCAGAGCTCCATG
GTGTACATGGCCTTGTTGGGCACGGTGGCAGTGGCGCTGTTGGTGTGCAC
GCTATACGTGATTTCACGAATCACGGACAAGGACCCCTACCTTTACAACA
AAGGAAAGCTGGGCAGACTCGAAAGGCAGTCCGTGTACAACACGAGTAAG
AAGTCCTGCTGA back to top
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