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Homology
BLAST of mRNA_H-paniculata_contig21158.5536.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 5.610e-8 Identity = 57/150 (38.00%), Postives = 68/150 (45.33%), Query Frame = 1
Query: 1219 MSPSAVQAIHQISKLRDAQYGIGPG-DSP------------------VHDQTSGYSSDEADGVLGAGR-QGWTSAHRGGAFSLGSRTGAAHPQSS-----------------------------SVDPGRANLGQLAAKAQEEDKMNHVR 1521
MSPSA+QAI QISKLRDAQY G G D P + GY S + GAGR QGW SAHRGGA+SL +++P+S+ + D RA LGQLAAK Q E+K R
Sbjct: 434 MSPSALQAIKQISKLRDAQYLSGRGRDKPSTSDEEQEPVLPMGPTPELAPAAGGYESSDGGHTGGAGRGQGWRSAHRGGAYSLSLNNNSSNPRSAGGAXXXXXXXXXXXXXXXXXXXXXXGQDAAKDSSRATLGQLAAKVQAEEKSRRTR 583
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 71.6 |
| Seed ortholog evalue | 1.4e-09 |
| Seed eggNOG ortholog | 2880.D8LG60 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | NAD-dependent histone deacetylase activity (H3-K14 specific) |
| EggNOG OGs | COG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1802 |
| Cds size | 1800 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21158.5536.1 >prot_H-paniculata_contig21158.5536.1 ID=prot_H-paniculata_contig21158.5536.1|Name=mRNA_H-paniculata_contig21158.5536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=600bp
HVVPPPGAPASYAGEQGAGGAGANAQTAAFRSGVAAQLAKKQSTSASVIA AAIAQDEKARVAAAAAALAAREFAAKQAAVHAAGGVSTMHGTGPTIPIPV APSTSSLPVALAEGAPLHLRQFSPAPAPTAGSTAGLPIGSNSSAAAAAAA AAMAIATSGIIGLSGSSIAAATTATLGNSTTGSGGGMACTLFSNTKAITT TEGVPAAPQQQQQQQARPGVYYNTPSGGGSGQPQQQQQQPGSSSHPATTS AMFQPAYPAATPTAAAAATAAAAAAAAAAVGIYGAQVSTTTAAPNAAAPL TGTTWESQSSPQVNSNGAGGPIAAAGGLINVGLPAVSGSAPRGAKPAPGV SGPVSAPGGHGSAAAQQQENEGYSQAMALAGGGVGAGGESALAAGAVARR GAARDIMSPSAVQAIHQISKLRDAQYGIGPGDSPVHDQTSGYSSDEADGV LGAGRQGWTSAHRGGAFSLGSRTGAAHPQSSSVDPGRANLGQLAAKAQEE DKMNHVRMVDMVAAATNAGAAGMPGIQGGENAMDANGIPVLGAAAGPGPT GASATAAAAAGGGGSGGSGGGGSSSGGLPGLGASISTTTGTGGGSGGGES back to topmRNA from alignment at H-paniculata_contig21158:311..4194+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig21158.5536.1 ID=mRNA_H-paniculata_contig21158.5536.1|Name=mRNA_H-paniculata_contig21158.5536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3884bp|location=Sequence derived from alignment at H-paniculata_contig21158:311..4194+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CACGTTGTGCCGCCGCCTGGCGCGCCGGCAAGCTACGCGGGAGAACAGGG
AGCAGGGGGAGCAGGGGCGAACGCCCAGACGGCGGCGTTCAGATCAGGCG
TAGCAGCACAGCTGGCAAAAAAGCAATCCACCTCGGCATCCGTGATAGCG
GCGGCCATAGCGCAGGACGAGAAAGCCCGGGTCGCTGCCGCCGCGGCAGC
CCTCGCTGCTCGAGAATTCGCCGCAAAGCAAGCGGCGGTTCATGCCGCGG
GAGGCGTTTCCACTATGCACGGCACCGGCCCTACTATTCCGATACCGGTG
GCTCCCTCGACGTCGTCGCTTCCTGTGGCACTGGCCGAAGGGGCGCCTCT
GCACCTGCGGCAATTTTCCCCAGCTCCCGCTCCCACCGCTGGATCGACCG
CCGGGCTGCCTATAGGGAGCAACAGCAGCGCCGCAGCGGCGGCGGCAGCC
GCGGCTATGGCTATTGCCACCTCGGGTATTATCGGTTTGTCTGGCAGCAG
CATTGCAGCCGCAACGACCGCCACCCTTGGCAACAGCACCACCGGCAGCG
GTGGTGGCATGGCGTGCACGCTGTTCAGCAACACGAAGGCCATCACCACG
ACGGAAGGTGTTCCGGCCGCGCCACAGCAGCAGCAGCAGCAGCAGGCCCG
TCCTGGTGTATATTACAACACCCCCTCCGGCGGCGGCAGCGGGCAACCGC
AGCAACAGCAGCAGCAGCCAGGGAGCTCTAGCCACCCGGCAACCACATCG
GCTATGTTCCAGCCGGCTTATCCAGCCGCCACCCCCACCGCCGCCGCCGC
CGCTACCGCCGCCGCAGCCGCTGCTGCCGCTGCCGCCGTCGGTATTTACG
GCGCTCAAGTCAGCACTACCACAGCAGCGCCTAATGCGGCCGCGCCCCTT
ACGGGTACGACATGGGAAAGTCAATCATCTCCTCAAGTCAACAGCAACGG
CGCTGGCGGCCCGATCGCCGCCGCGGGCGGCCTCATCAATGTTGGGCTTC
CGGCTGTAAGCGGTTCTGCCCCCCGGGGGGCAAAGCCAGCACCAGGCGTC
TCTGGCCCCGTTTCTGCTCCGGGAGGGCACGGCTCGGCAGCCGCCCAGCA
ACAGGAAAATGAAGGGTACAGTCAAGCAATGGCACTGGCGGGGGGTGGTG
TCGGCGCAGGAGGGGAGTCCGCGTTGGCCGCCGGAGCTGTGGCCCGCCGC
GGTGCCGCGAGAGATATAATGTCTCCGTCGGCGGTGCAGGCCATCCACCA
GATCTCCAAGGTGGGGGAAAGATGAGGCTTCCAATAAATTTTTTTGTCTG
TTTTGACGTGGGATTAATGTTTCGTTTTTTCATGGTTACTTTCTGCCGGG
GCGTATCTGCCGCGCGTGAGTATGTGTATTTTTTGTTTGTGACGGGGCAC
TCACTTGTAGAGCGTAACGTTATATAGCGACCGTGTCTTGTATCGACTTA
GGTGGAATGTGCCAGTCCAGTCTTCCCCAAAACTTGCAACTAATACAGCA
CATGATTTTTTTTTTGTCCTCGCCAGCGTTGCGTTGTTCGAGTAAACCGT
CCCGTACTGTACAGTTTTATTTATTACTTGCGTAAGCTCGTATTCCGTCG
TACCACCGCACTGATGCCACAGCGGCCATCCGCCATCCTCCATCCGTCAC
CGAGATTTCTCACATCTCTCCTTTTTTTTTAATCCTCTACTGGTGTGGAT
GTTTTTGGACATCGGCAGCTCCGAGACGCGCAGTACGGGATTGGGCCAGG
AGATTCTCCCGTCCACGATCAAACCAGTGGTTATTCTAGCGACGAGGCCG
ACGGCGTTTTGGGAGCGGGTCGGCAGGGGTGGACGTCCGCTCACCGGGGC
GGCGCCTTCTCTCTGTGAGTAATTGTACCGATAGTAGCCTTACATCCGTA
GTAAAAAGCTGTGCAACAAACCAAAACAACCACACGCATATATTAAAGGA
GATATTTTTTTGGCAGTTGCGTGTTTTTTTCGGTTTGGGAACACGTTACA
TAGCTAAAATAAATGGGGGGGGGGGAGTGAATAGTAAATATAAATAGGCG
TTTTTTTCGGGGGGTGGAGGGTCGTGGGGAGTGCATAGTAAATGACGTCA
ATGGACGTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTTGTCTC
TTTTTAGTATCATCCATTGTTCGTGAAGAAATTAGGAGCGGAACGGATGA
ATGCAAGTGCGTAAATGGGAAAAACCCGAAACAGGCAGATGGTCATGATT
CCGGCGATGTTTATTAGATCTCATTTTTATAAACAAGTACCACAACCATC
GTGTATTTTGTGATAAGTTGACCGGGTCTAACTCCTTAACTAGTGTCCAG
GATAATGTGGGTAGGAAAAATGCAAACTGTTCGGTGATGGAACGCGACTT
GAGGCGCCAAAAAATCGAAATAGCTGGAGTAACTTTGTTACTAATTTGCC
TGGTAAGAGAGCAGACCGATTTCTTGTTTCTAGCCAATCTCATCTGATGT
GTGTCGGTCGTATTTCTGGTATTTTCCTGCTGTTTAGAGCAGCGCCAAAA
AAAACACTTTCAATCCCTGTGTTACCAGACCCTGTACAATCCCTACACAG
TCCTTGTCTAGAAATGGTACTCTCTGCACGAGTTTTCAAACATACATATA
ACGCCTCCGCGAAGGCATAAGGGGTCAGGGGTCAGGGCCGCAATATATGT
GATTCAGTCATACTCCTCGTGTTTGTTCTGGATCTCTCCCTCCCTCGCTT
CCCCCAATTTACGCGAGATGCTTTCCTCCGATCTGCCATCGTTATTTTCA
ATCAACAAACTATTAATACCCAAAACACAGAGGCTCGCGTACGGGCGCCG
CCCACCCCCAGAGCTCGTCTGTAGATCCAGGACGAGCCAATCTGGGCCAA
CTAGCCGCCAAGGCGCAAGAGGAAGACAAGATGAACCACGTGCGCATGGT
GGACATGGTGGCAGCCGCGACTAATGCCGGTGCAGCCGGAATGCCTGGCA
TCCAAGGTGTATGTCTAGTTATTCATACGTTTAGTTATGTATAGACTTTC
AGTCCCCTTGTGGAGAAAGAACTATAGTAATTGTGGTATATATATATATA
TATATATAATTGTAGTTTAATAAGGTCGTCGTTGTCCCAGGTATACGTTT
AAGGTATAGGCTTTCACCCTTCTCGTGGGGAAAAACATATCGCAGTCCTG
TTTTGTTATTATTATTTATTACGGCTTGGCCGTCGTCGTCGTCGTCGTCC
TCATTTTATAACATTTTTGCAAGTCCCTACTCGAGAAAACCTATGATACA
CGGAATCTTGGTAGGACATCTTAGCTTACCGGGCGTCGCTAGTGCGAGAG
CGCAGAAGAAAGCCATTGTGCGTGGGATGAGGACACAGTACTGGAGTATG
ATCACACGGGCGCAGTAGCCGGGGTCTTATGATTTACTATTTTAGTGCCT
TGAGTCTTTTTTCTTTTTTGCCACATGAGCGTTAGACCTATAGTTCTACT
AACTGTGGCAAATGGGTTGGTTGACTCACGAAAGAGAATCCCGGAGAGTG
AAGTTTTATTTTTATTTCGGGGAGTCAGTCGTTCATGTAAACGTATCCAC
GCTCCCCTATCCACCCATTCACCCATCCACCCACCCACCCCCTCCCGCCG
ATTGATCACAAGCAGGTGGCGAAAACGCCATGGACGCAAATGGAATCCCC
GTGCTGGGTGCTGCCGCCGGACCAGGGCCAACAGGGGCCAGCGCTACCGC
TGCGGCGGCCGCAGGGGGCGGGGGAAGTGGCGGCAGCGGTGGCGGCGGCA
GCAGCAGCGGCGGCTTACCTGGATTGGGTGCCAGTATCAGTACTACTACA
GGCACTGGTGGCGGTTCGGGTGGTGGGGAGAGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig21158:311..4194+ >mRNA_H-paniculata_contig21158.5536.1 ID=mRNA_H-paniculata_contig21158.5536.1|Name=mRNA_H-paniculata_contig21158.5536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3600bp|location=Sequence derived from alignment at H-paniculata_contig21158:311..4194+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CACGTTGTGCCGCCGCCTGGCGCGCCGGCAAGCTACGCGGGAGAACAGGG AGCAGGGGGAGCAGGGGCGAACGCCCAGACGGCGGCGTTCAGATCAGGCG TAGCAGCACAGCTGGCAAAAAAGCAATCCACCTCGGCATCCGTGATAGCG GCGGCCATAGCGCAGGACGAGAAAGCCCGGGTCGCTGCCGCCGCGGCAGC CCTCGCTGCTCGAGAATTCGCCGCAAAGCAAGCGGCGGTTCATGCCGCGG GAGGCGTTTCCACTATGCACGGCACCGGCCCTACTATTCCGATACCGGTG GCTCCCTCGACGTCGTCGCTTCCTGTGGCACTGGCCGAAGGGGCGCCTCT GCACCTGCGGCAATTTTCCCCAGCTCCCGCTCCCACCGCTGGATCGACCG CCGGGCTGCCTATAGGGAGCAACAGCAGCGCCGCAGCGGCGGCGGCAGCC GCGGCTATGGCTATTGCCACCTCGGGTATTATCGGTTTGTCTGGCAGCAG CATTGCAGCCGCAACGACCGCCACCCTTGGCAACAGCACCACCGGCAGCG GTGGTGGCATGGCGTGCACGCTGTTCAGCAACACGAAGGCCATCACCACG ACGGAAGGTGTTCCGGCCGCGCCACAGCAGCAGCAGCAGCAGCAGGCCCG TCCTGGTGTATATTACAACACCCCCTCCGGCGGCGGCAGCGGGCAACCGC AGCAACAGCAGCAGCAGCCAGGGAGCTCTAGCCACCCGGCAACCACATCG GCTATGTTCCAGCCGGCTTATCCAGCCGCCACCCCCACCGCCGCCGCCGC CGCTACCGCCGCCGCAGCCGCTGCTGCCGCTGCCGCCGTCGGTATTTACG GCGCTCAAGTCAGCACTACCACAGCAGCGCCTAATGCGGCCGCGCCCCTT ACGGGTACGACATGGGAAAGTCAATCATCTCCTCAAGTCAACAGCAACGG CGCTGGCGGCCCGATCGCCGCCGCGGGCGGCCTCATCAATGTTGGGCTTC CGGCTGTAAGCGGTTCTGCCCCCCGGGGGGCAAAGCCAGCACCAGGCGTC TCTGGCCCCGTTTCTGCTCCGGGAGGGCACGGCTCGGCAGCCGCCCAGCA ACAGGAAAATGAAGGGTACAGTCAAGCAATGGCACTGGCGGGGGGTGGTG TCGGCGCAGGAGGGGAGTCCGCGTTGGCCGCCGGAGCTGTGGCCCGCCGC GGTGCCGCGAGAGATATAATGTCTCCGTCGGCGGTGCAGGCCATCCACCA GATCTCCAAGCACGTTGTGCCGCCGCCTGGCGCGCCGGCAAGCTACGCGG GAGAACAGGGAGCAGGGGGAGCAGGGGCGAACGCCCAGACGGCGGCGTTC AGATCAGGCGTAGCAGCACAGCTGGCAAAAAAGCAATCCACCTCGGCATC CGTGATAGCGGCGGCCATAGCGCAGGACGAGAAAGCCCGGGTCGCTGCCG CCGCGGCAGCCCTCGCTGCTCGAGAATTCGCCGCAAAGCAAGCGGCGGTT CATGCCGCGGGAGGCGTTTCCACTATGCACGGCACCGGCCCTACTATTCC GATACCGGTGGCTCCCTCGACGTCGTCGCTTCCTGTGGCACTGGCCGAAG GGGCGCCTCTGCACCTGCGGCAATTTTCCCCAGCTCCCGCTCCCACCGCT GGATCGACCGCCGGGCTGCCTATAGGGAGCAACAGCAGCGCCGCAGCGGC GGCGGCAGCCGCGGCTATGGCTATTGCCACCTCGGGTATTATCGGTTTGT CTGGCAGCAGCATTGCAGCCGCAACGACCGCCACCCTTGGCAACAGCACC ACCGGCAGCGGTGGTGGCATGGCGTGCACGCTGTTCAGCAACACGAAGGC CATCACCACGACGGAAGGTGTTCCGGCCGCGCCACAGCAGCAGCAGCAGC AGCAGGCCCGTCCTGGTGTATATTACAACACCCCCTCCGGCGGCGGCAGC GGGCAACCGCAGCAACAGCAGCAGCAGCCAGGGAGCTCTAGCCACCCGGC AACCACATCGGCTATGTTCCAGCCGGCTTATCCAGCCGCCACCCCCACCG CCGCCGCCGCCGCTACCGCCGCCGCAGCCGCTGCTGCCGCTGCCGCCGTC GGTATTTACGGCGCTCAAGTCAGCACTACCACAGCAGCGCCTAATGCGGC CGCGCCCCTTACGGGTACGACATGGGAAAGTCAATCATCTCCTCAAGTCA ACAGCAACGGCGCTGGCGGCCCGATCGCCGCCGCGGGCGGCCTCATCAAT GTTGGGCTTCCGGCTGTAAGCGGTTCTGCCCCCCGGGGGGCAAAGCCAGC ACCAGGCGTCTCTGGCCCCGTTTCTGCTCCGGGAGGGCACGGCTCGGCAG CCGCCCAGCAACAGGAAAATGAAGGGTACAGTCAAGCAATGGCACTGGCG GGGGGTGGTGTCGGCGCAGGAGGGGAGTCCGCGTTGGCCGCCGGAGCTGT GGCCCGCCGCGGTGCCGCGAGAGATATAATGTCTCCGTCGGCGGTGCAGG CCATCCACCAGATCTCCAAGCTCCGAGACGCGCAGTACGGGATTGGGCCA GGAGATTCTCCCGTCCACGATCAAACCAGTGGTTATTCTAGCGACGAGGC CGACGGCGTTTTGGGAGCGGGTCGGCAGGGGTGGACGTCCGCTCACCGGG GCGGCGCCTTCTCTCTCTCCGAGACGCGCAGTACGGGATTGGGCCAGGAG ATTCTCCCGTCCACGATCAAACCAGTGGTTATTCTAGCGACGAGGCCGAC GGCGTTTTGGGAGCGGGTCGGCAGGGGTGGACGTCCGCTCACCGGGGCGG CGCCTTCTCTCTAGGCTCGCGTACGGGCGCCGCCCACCCCCAGAGCTCGT CTGTAGATCCAGGACGAGCCAATCTGGGCCAACTAGCCGCCAAGGCGCAA GAGGAAGACAAGATGAACCACGTGCGCATGGTGGACATGGTGGCAGCCGC GACTAATGCCGGTGCAGCCGGAATGCCTGGCATCCAAGAGGCTCGCGTAC GGGCGCCGCCCACCCCCAGAGCTCGTCTGTAGATCCAGGACGAGCCAATC TGGGCCAACTAGCCGCCAAGGCGCAAGAGGAAGACAAGATGAACCACGTG CGCATGGTGGACATGGTGGCAGCCGCGACTAATGCCGGTGCAGCCGGAAT GCCTGGCATCCAAGGTGGCGAAAACGCCATGGACGCAAATGGAATCCCCG TGCTGGGTGCTGCCGCCGGACCAGGGCCAACAGGGGCCAGCGCTACCGCT GCGGCGGCCGCAGGGGGCGGGGGAAGTGGCGGCAGCGGTGGCGGCGGCAG CAGCAGCGGCGGCTTACCTGGATTGGGTGCCAGTATCAGTACTACTACAG GCACTGGTGGCGGTTCGGGTGGTGGGGAGAGCGTGGCGAAAACGCCATGG ACGCAAATGGAATCCCCGTGCTGGGTGCTGCCGCCGGACCAGGGCCAACA GGGGCCAGCGCTACCGCTGCGGCGGCCGCAGGGGGCGGGGGAAGTGGCGG CAGCGGTGGCGGCGGCAGCAGCAGCGGCGGCTTACCTGGATTGGGTGCCA GTATCAGTACTACTACAGGCACTGGTGGCGGTTCGGGTGGTGGGGAGAGC back to top
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