mRNA_H-paniculata_contig10863.552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10863.552.1
Unique NamemRNA_H-paniculata_contig10863.552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10863.552.1 vs. uniprot
Match: D7G3K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.200e-57
Identity = 115/227 (50.66%), Postives = 139/227 (61.23%), Query Frame = 1 
Query:    1 TFRLKIHIYEAHLGL---------TQGNKEEQIDASSHAG-WDTIASVYLPNDPAGERHDTIRARKSRNPVWNQSVMFEDIDFSDHVRLEVLGMRKLGENPVLARLDFEVHDVMGLDLRNSASLFQLECDRVRVRYGVILLAFEFDPPVAADVLVALNG---------------------ETTVRWG-----EESPRSPPVEVDYPVYVNVSENFACLLLDDDEPQN 573
            TF L I+IYEAHLG+         T G            G WDT   V LP DP GERH+T RA K+ NPVW+Q+V+  DI++S+ VR+E+   RK+GENPVLA ++FEVHDV+GL LR  AS+FQLECDR R RYG+ILLAF FDPPVAADVL AL+G                     E    WG     +++ R   VEV  PVY+NV  +FACLLLDDD P N
Sbjct:   18 TFTLTIYIYEAHLGVNSSISNNSSTGGPXXXXXXXXXGGGPWDTKIVVSLPKDPMGERHETGRAGKTSNPVWDQAVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDGVGLASLPRGVTTPADQGHDEGEKAPAWGAPEAGQQAERE--VEVAEPVYINVEGHFACLLLDDDTPLN 242
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BLAST of mRNA_H-paniculata_contig10863.552.1 vs. uniprot
Match: A0A7S2BYM4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYM4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.200e-25
Identity = 63/185 (34.05%), Postives = 98/185 (52.97%), Query Frame = 1 
Query:    1 TFRLKIHIYEAHLGLTQGNKEEQIDASSHAGWDTIASVYLPNDPAGERHDTIRARKSRNPVWNQSVMFEDIDFSDHVRLEVLGMRKLGENPVLARLDFEVHDVMGLDLRNSASLFQLECDRVRVRYGVILLAFEFDPPVAADVLVALNGETTVRWGEESPRSPPVEVDYPVYVNVSENFACLLLD 555
            T+RL IH +EA L + + +K     A      D    V+L  D  G +  T   +KS +PVWNQS++F ++++SD +R+E+   R+   N  L   DF V DVM   ++     ++L  ++V    G +L AF+FDPPV  D+      E       E+  +   EV+  VY+NV  NF+C+L+D
Sbjct:   18 TYRLTIHFFEAQLQVAENSKANPQGAML----DPYVVVFLTRDREGSKQKTSVQKKSLSPVWNQSLVFNELNYSDKLRVEIKANRQFQVNDFLCGFDFIVADVMAQSVQECQPSYRLVGEKVT---GTLLAAFDFDPPVPLDI------EPPPAAPIEATSAGEEEVEEKVYLNVERNFSCMLID 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10863.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3K7_ECTSI2.200e-5750.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BYM4_9STRA1.200e-2534.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10863contigH-paniculata_contig10863:1452..5122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-19_005030.1
Exons5
Model size816
Cds size813
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10863.552.1prot_H-paniculata_contig10863.552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10863 1452..5121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928790.415857-CDS-H-paniculata_contig10863:1451..16431622928790.415857-CDS-H-paniculata_contig10863:1451..1643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 1452..1643 +
1691480620.9063084-CDS-H-paniculata_contig10863:1451..16431691480620.9063084-CDS-H-paniculata_contig10863:1451..1643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 1452..1643 +
1622928790.432271-CDS-H-paniculata_contig10863:2502..26071622928790.432271-CDS-H-paniculata_contig10863:2502..2607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 2503..2607 +
1691480620.914834-CDS-H-paniculata_contig10863:2502..26071691480620.914834-CDS-H-paniculata_contig10863:2502..2607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 2503..2607 +
1622928790.449111-CDS-H-paniculata_contig10863:3161..33171622928790.449111-CDS-H-paniculata_contig10863:3161..3317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 3162..3317 +
1691480620.9307053-CDS-H-paniculata_contig10863:3161..33171691480620.9307053-CDS-H-paniculata_contig10863:3161..3317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 3162..3317 +
1622928790.4671934-CDS-H-paniculata_contig10863:4240..43601622928790.4671934-CDS-H-paniculata_contig10863:4240..4360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 4241..4360 +
1691480620.9390323-CDS-H-paniculata_contig10863:4240..43601691480620.9390323-CDS-H-paniculata_contig10863:4240..4360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 4241..4360 +
1622928790.483392-CDS-H-paniculata_contig10863:4881..51211622928790.483392-CDS-H-paniculata_contig10863:4881..5121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 4882..5121 +
1691480620.9486635-CDS-H-paniculata_contig10863:4881..51211691480620.9486635-CDS-H-paniculata_contig10863:4881..5121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10863 4882..5121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10863.552.1

>prot_H-paniculata_contig10863.552.1 ID=prot_H-paniculata_contig10863.552.1|Name=mRNA_H-paniculata_contig10863.552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
TFRLKIHIYEAHLGLTQGNKEEQIDASSHAGWDTIASVYLPNDPAGERHD
TIRARKSRNPVWNQSVMFEDIDFSDHVRLEVLGMRKLGENPVLARLDFEV
HDVMGLDLRNSASLFQLECDRVRVRYGVILLAFEFDPPVAADVLVALNGE
TTVRWGEESPRSPPVEVDYPVYVNVSENFACLLLDDDEPQNTEFPWRDSK
HSAVARSVNQPSCTTGRPRPSPILAPSRLELPPTTTFEDSQHEWFSRRSQ
NRRESALGPNFAHELSLSMGG
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mRNA from alignment at H-paniculata_contig10863:1452..5122+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10863.552.1 ID=mRNA_H-paniculata_contig10863.552.1|Name=mRNA_H-paniculata_contig10863.552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3671bp|location=Sequence derived from alignment at H-paniculata_contig10863:1452..5122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTTCGTCTCAAGATCCACATCTATGAGGCACATTTAGGCCTTACCCA
GGGTAACAAAGAAGAACAGATAGATGCGTCGTCCCATGCTGGGTGGGATA
CCATCGCTTCCGTCTACCTGCCGAATGATCCTGCTGGTGAAAGACATGAC
ACCATCCGAGCTCGAAAGTCCCGCAATCCGGTTTGGAACCAGGTGGGGTG
GCTTGACCGGGTGGGTCTGAAGACAATGGGGTGCCCTGTGGTGGGTGGCT
GTGTAGGTGTGGACAAAATAAGGTACCTGTGCCTGTGTGCGAGTACGCGC
GTGTAGCGGTTGCACAATTGCGGCGTTTAGCCTGGTTTTGCGAGTCGGGA
GGGGAATTGCGGGAGGACTGATTGTTTCGCCGATTTTGCACGGAATATTT
AGCAGCCGGCTTGTAAGCCGGATTAAAGGTTTAGTCTGGTTACTCCGGTG
TAGATAGTATAGTAGTTGTTCGAGGACAAGCTCCAAGAAGAAAACCCTTG
CTACCTGGCAAGTAATATACACAATGTCCACTAACACTTCAATTTTTCAC
AAGTTACTCGAGTACGGAGTGGAACAGATGTTTGGAATTGACCATACCGA
ATGCAACCCTTTGAGAGCGTAAGGCCAAGCTTCCAATCAGCTGTGCAGGG
CTTTCTTTCAGGTTCGTGGCTAAACGAGCCCTGCGTTTTTGCACGTTCTC
TCTCTACATTGAATCCGAGAGGGATATGAATCGATGAGCGTGAGACCTCA
AAAGGCAAAGAAATGTTCCACTTTTTAGACCTGAGACTCGCTACCATGTA
CCCAGATAACTATTATGAAGCTGGTTGAGCATCATCCTCTAGACATATTT
AATCGTTCTATTCACAGCTGGTCGCTAGGAGATGTTTATTTTGGCCGTTA
CGAACTCCGGTTGGTCGTTCCCAAAGGGTCTGAAAAGGACATTTCCTAAT
GATTTTTTTATGTGCTTTCCGTTTCTTTGTGCTCCTGTCGTGTGTGCCCT
GTGGCGGTGTCTTTTCTTGTTTTGTTTTTTTCCCCTTGTCAACGCATACA
GTCGGTAATGTTCGAGGACATCGATTTTTCAGATCACGTGCGGCTAGAGG
TACTGGGAATGCGAAAGCTCGGGGAGAATCCGGTGCTGGCCAGACTAGAC
TTCGAGGTGATAAGCAAGTTCCTTCACGTGACCGGCGGTGCACATGGCTT
CTTCACTACGACCGTGGGCAGAAGCGGTTCGCGTTATCCACAGTTCCGTC
AGTTTTTTTGTTTTTGCTGTTACACCTTTTCGCACTCGTTTCTGTCTGTA
GGTTGCGGGACCGGCCAACGACCGGTTTTTCTGGCGGATTTGGGGCGGCT
GATAGGTCGAATGTACTTGGTTAGCATCTGCGATCATTCGCCTCGCACAA
AAATATTGTCATCGTATTTTGTATGTGAAAAATCACCGCCCCCACTATTG
AAATCGATGTATCGATATTTGCTTTTTTGCCTTTGATCACCACACCATAT
GTTTAGATTTTTGGGGATAAACTATCGCGTGTTATTTTTTGCGATATTTT
TAATAAAAAAGAAACGATAAGAGTATTGATGTAAATTATGTTTCCACCGC
GGGTGGTCGAGTGTTGGTGTTGTTGGTTGGTAACAGTAATCGTCGAGTGA
CTGCCTTCGTCTAATTCTTCGTGGAAACTGTGAACTGTGCTATACATGTT
TTTTGCGCAGGTCCACGATGTGATGGGGTTGGATCTGCGAAATAGCGCAT
CCTTGTTCCAGTTAGAGTGCGACCGCGTGCGAGTCCGCTACGGCGTGATA
CTGTTGGCATTCGAGTTTGACCCGCCGGTGGCTGCTGATGTGCTCGTGGC
TCTGAATGGAGAGACGGTGAGTTGGAAAAATGAAAAAATTCTGCGGGGCT
GCGTGTGTGTATGAGCGATGGGACTAAATCTGGAAGCTCTATTATATAGT
TTGTTGTTTTCTGAGCTTCTCTGTCGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGCATGTCTGTTTTACCCTCCGTTCGAGTATGAATTTTGAAATGGTTT
GGACGAAACATGTATGACACGTATTCGTTTGAGTTGTTGTGTGTTTGGGC
GGGGGGGCGGGCGGGCGGGCAGGTACAGGAAATAAAGTGTTGATCGCTGT
TCGGAGAAGTCGTAGTGTTGATGGTCCGGTGCACACGAGAATGAACCTGC
TCATGCTGAACCTTGAGGCGAAATACGTGGTGAAAAATTCGTCTGAACCA
GGCGAGATGCTCGTACTCGTCCGGGGGATGTGAGAGTGTTTTCTCTCTCT
TGGATTGTGTGTGACATCTCGTCGTTTCATTCTTTCTCTGTGTCAGATGT
ATTTGGCATGGTGTATGTATCTCGTGCTTCCTCGGTCTTTTTTGTTCTTA
GTCGTTATGTAGGGCATGCGTGTCGATGTTATTACGAATCTTCCCGACAG
ATTTTGATACGATGAACGCGCCGTTCTCAAAGAAGAGCAGAAATATCTTC
CAAGTTATTCTTCCGGTATCTGTAGAGCTAGCTCCTACATGGTTTCAAAC
AATTGCCGGAGATGGTGCGCACAACAAACAACATGCAGAGTCGGATTATC
GCCTAGGGAAACTGATTTTTGTGGACATCTCAATCCAATTAGCTAGTAAA
AGAGGTGAAAAATTAAACTAGGACGCGCGTGAGGGACGACATTGATTCTT
CAATTTCACGATCTCGAGATATCTGTTCTGATTGATCTATTTTTGTTCTG
TTGTACGTGTCTCATCTCATCTCTCCGGTCTATCGGCAGACCGTGCGCTG
GGGAGAAGAAAGCCCTCGCAGCCCTCCGGTGGAGGTAGATTACCCGGTAT
ACGTTAATGTATCTGAAAATTTCGCTTGCCTCTTACTGGATGATGACGAG
CCGCAAAATGTGAGTTTTTACCCTTTTAGTATCGGGGGCTGCCCCGGTAT
AAGAAATCTTACAGTTAGCGCCGAGGGCCATGAACCCCTCTCCCCCCCCC
CCTTTCTTTTTTAGCATGGTGAGAAAATCTCCAACGAAGAATTGAACATA
TGTAAACCCTCAATCATCACAAAACAGAGGCTGGCCCAAATTCACTTCTT
TTTTTGTTGTTGTTGTCAGTAGTGTTATTTTCTTCCTACAGAGTAACAGT
CTCATCGCCTTCACTAAACGTTTCTTTTTCAATAATAGATCTAGCTCTAC
ATTCAAAGGAAAATCCTAAGTATGAAAATCACCAGCCAGCAGTGTAATAT
ATGTTTGTTTGTTTTTTTGTAGATTACTCTTTTTGCCCTGATCAAATGAC
AAAAATAACGACAACAACAGCAACAACAACAACAACAACAACTACTACTA
CTACTACTACTACTACTACCATCATTTACTTTCTGTTTTATTTCTCATTC
GACATCCCCTCGTTCTCTATCTCTGACCAGACCGAATTTCCATGGCGTGA
TTCAAAGCACTCGGCGGTCGCGAGAAGTGTCAATCAACCATCATGCACTA
CGGGACGGCCTCGACCGTCGCCAATTCTCGCACCGTCCCGCTTGGAGCTC
CCGCCAACAACGACCTTCGAGGATTCCCAGCATGAATGGTTCTCGCGTCG
ATCCCAGAATAGAAGAGAATCGGCGTTGGGACCGAACTTTGCGCACGAAC
TTAGTCTGAGCATGGGTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10863:1452..5122+

>mRNA_H-paniculata_contig10863.552.1 ID=mRNA_H-paniculata_contig10863.552.1|Name=mRNA_H-paniculata_contig10863.552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig10863:1452..5122+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTTCGTCTCAAGATCCACATCTATGAGGCACATTTAGGCCTTACCCA
GGGTAACAAAGAAGAACAGATAGATGCGTCGTCCCATGCTGGGTGGGATA
CCATCGCTTCCGTCTACCTGCCGAATGATCCTGCTGGTGAAAGACATGAC
ACCATCCGAGCTCGAAAGTCCCGCAATCCGGTTTGGAACCAGACCTTTCG
TCTCAAGATCCACATCTATGAGGCACATTTAGGCCTTACCCAGGGTAACA
AAGAAGAACAGATAGATGCGTCGTCCCATGCTGGGTGGGATACCATCGCT
TCCGTCTACCTGCCGAATGATCCTGCTGGTGAAAGACATGACACCATCCG
AGCTCGAAAGTCCCGCAATCCGGTTTGGAACCAGTCGGTAATGTTCGAGG
ACATCGATTTTTCAGATCACGTGCGGCTAGAGGTACTGGGAATGCGAAAG
CTCGGGGAGAATCCGGTGCTGGCCAGACTAGACTTCGAGTCGGTAATGTT
CGAGGACATCGATTTTTCAGATCACGTGCGGCTAGAGGTACTGGGAATGC
GAAAGCTCGGGGAGAATCCGGTGCTGGCCAGACTAGACTTCGAGGTCCAC
GATGTGATGGGGTTGGATCTGCGAAATAGCGCATCCTTGTTCCAGTTAGA
GTGCGACCGCGTGCGAGTCCGCTACGGCGTGATACTGTTGGCATTCGAGT
TTGACCCGCCGGTGGCTGCTGATGTGCTCGTGGCTCTGAATGGAGAGACG
GTCCACGATGTGATGGGGTTGGATCTGCGAAATAGCGCATCCTTGTTCCA
GTTAGAGTGCGACCGCGTGCGAGTCCGCTACGGCGTGATACTGTTGGCAT
TCGAGTTTGACCCGCCGGTGGCTGCTGATGTGCTCGTGGCTCTGAATGGA
GAGACGACCGTGCGCTGGGGAGAAGAAAGCCCTCGCAGCCCTCCGGTGGA
GGTAGATTACCCGGTATACGTTAATGTATCTGAAAATTTCGCTTGCCTCT
TACTGGATGATGACGAGCCGCAAAATACCGTGCGCTGGGGAGAAGAAAGC
CCTCGCAGCCCTCCGGTGGAGGTAGATTACCCGGTATACGTTAATGTATC
TGAAAATTTCGCTTGCCTCTTACTGGATGATGACGAGCCGCAAAATACCG
AATTTCCATGGCGTGATTCAAAGCACTCGGCGGTCGCGAGAAGTGTCAAT
CAACCATCATGCACTACGGGACGGCCTCGACCGTCGCCAATTCTCGCACC
GTCCCGCTTGGAGCTCCCGCCAACAACGACCTTCGAGGATTCCCAGCATG
AATGGTTCTCGCGTCGATCCCAGAATAGAAGAGAATCGGCGTTGGGACCG
AACTTTGCGCACGAACTTAGTCTGAGCATGGGTGGGACCGAATTTCCATG
GCGTGATTCAAAGCACTCGGCGGTCGCGAGAAGTGTCAATCAACCATCAT
GCACTACGGGACGGCCTCGACCGTCGCCAATTCTCGCACCGTCCCGCTTG
GAGCTCCCGCCAACAACGACCTTCGAGGATTCCCAGCATGAATGGTTCTC
GCGTCGATCCCAGAATAGAAGAGAATCGGCGTTGGGACCGAACTTTGCGC
ACGAACTTAGTCTGAGCATGGGTGGG
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