mRNA_H-paniculata_contig2112.5519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2112.5519.1
Unique NamemRNA_H-paniculata_contig2112.5519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 2.470e-129
Identity = 193/268 (72.01%), Postives = 223/268 (83.21%), Query Frame = 3 
Query:  342 DLLARSMEWLNLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGVLKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDLYRYRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKVSAGSGGDPTGDR------GRSRFSKLDISRQEALTRTLRGLSAGAR-IPLAGIAGLRGAVRRRIARGRM 1124
            +LLARSME LN+ +LG+VC V+  W+ AA+ED +W FWW+RRF E PPP+RGRA  G LK+L++YR  DPLVGDK+EVSWEGRFRLESLDVFVGRSWWEATVVQK+D ++Y+IHYPGWDSNWDEWV RDRLRWPVD SYLST+F+VR+VVEVWCTGTHVKGAWLQARV+QIKQDQVSLKNVLASSPRT+WVPR+  R+V  G+    +  R      G  R SKLD SRQEAL R LRGLSAGAR +P AG+AGLRGAVRRR +  RM
Sbjct:   32 ELLARSMELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAGHLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKMDGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRVCTGASCVNSSSRNGXXXXGGGRSSKLDASRQEALARALRGLSAGARRLPRAGLAGLRGAVRRRASLSRM 299
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.370e-42
Identity = 93/239 (38.91%), Postives = 135/239 (56.49%), Query Frame = 3 
Query:  303 RSRDKKMPSHVIHDLLARSMEWLNLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGV---LKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDL-YRYRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKVSAGSGGDPTGDRGRSRFSKLDIS 1007
            + R  K+PS V    L  +  ++++ ELG   SV   WK   Q   +W   + +RF     P       G+    + L++ R  DP VGD +EV+W+G+FRLES+D++ G +WW A VV+K +   RY+IHYPGWDS WDEWV+RDRLRW V+   L+        VE+WC G++V GAWL+A+V+++K     +  VL+S    +WV R   R +S   G    G +G S F   D +
Sbjct:  191 KDRVNKLPSAV----LIYTASFMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGLPLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALWVNRERVR-ISPKGGARSLGKQGASNFFSRDAA 421
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.580e-41
Identity = 83/207 (40.10%), Postives = 119/207 (57.49%), Query Frame = 3 
Query:  303 RSRDKKMPSHVIHDLLARSMEWLNLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFL---EPPPPKRGRAHDGVLKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDL-YRYRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIW 911
            + R  K+PS V    L  +  ++++ ELG   SV   WK   Q   +W   + +RF     P     G         L++ R  DP VGD +EV+W+G+FRLES+D++ G +WW A VV+K +   RY+IHYPGWDS WDEWV RDRLRW V+   L+        VE+WC G++V GAWL+A+V+++K     +  VL+S    +W
Sbjct:   69 KDRVNKLPSAV----LIYTASFMSISELGMAASVCQQWKETVQSGAVWKPLYIKRFHFLHSPDDASTGIGLPVSYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG--ALW 268
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.910e-41
Identity = 84/202 (41.58%), Postives = 115/202 (56.93%), Query Frame = 3 
Query:  360 MEWLNLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGVL-----KRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVD-LYRYRIHYPGWDSNWDEWVSRDRLRWPVDSS---YLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKV 938
            M +L+L ELG +  +S  W+  ++ D +W   +  RF          +   V      K  +  R   P VGD++EV+W G+FRLESL+VF G +WW A VV + D   RY++HYPGW+  WDEWVSR+RLRW  D+     L    +V   VEVWC G HV GAWL+ RV  I+ D+  L ++LA+   T  +P A CR V
Sbjct:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG--TFSIPLARCRLV 200
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.100e-36
Identity = 86/233 (36.91%), Postives = 131/233 (56.22%), Query Frame = 3 
Query:  363 EWLNLHELGE-VCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGV---------LKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQ-KVDLYRYRIHYPGWDSNWDEWVSRDRLRWPVD---SSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKVSAGSGGDPTGDRGRSRFSKL--DISRQ 1013
            ++L L E G+ VC VS  W+   + + +W   +  RF    P +    H            +K L+  R   P VGD++EV+W G+FRLESL+++ G +WW A +V+   D  RY++HYPGW++ WDE+V R+RLRW  D   +        V  +VE+WC GT+V GAWL+ RV  I+ ++V L +V+A    ++   R  CR VS G+   P  + GRS  ++   +I+RQ
Sbjct:   42 QFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEER--CRLVSKGASAPPQSE-GRSDTARALCNIARQ 271
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.820e-36
Identity = 81/238 (34.03%), Postives = 126/238 (52.94%), Query Frame = 3 
Query:  312 DKKMPSHVIHDLLARS-----MEWLNLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGVL---KRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDLYR-----------------YRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKVSAGS 950
            +++ P  V+ + L R      + +L++     + +VS  W + + ED +W   +  RF        G          K+ Y+ R  DP VGD +EV+W G+FRLESL+++ G +WW A VV KV L                   Y++ +PGW+  WDEWVSRDRLRW   ++  + + K R  VEVWC   +V GAWL+A V++I+ D V +  VL++   ++WV R+  R+  + S
Sbjct:   85 EEEAPPVVVSNTLPRDTMLLCLSFLDVTAHTTLSTVSRDWLSLSSEDALWRDHYLNRFSGGSDEGDGETSADEYEDYKQEYKQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADALKPRDFVEVWCGSQNVPGAWLEASVQKIRGDAVEVGRVLSTG--SLWVDRSRVRRARSSS 320
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.450e-31
Identity = 79/234 (33.76%), Postives = 118/234 (50.43%), Query Frame = 3 
Query:  288 IHRMVRSRDKKMPSHVIHDLLARSMEWLNLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGVLKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDLY-----------------RYRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKV 938
            IH     R   +P  ++ D +  +++  NL     + +VS   + AA  D  W   ++RRF               L+  ++ R  DP  GD++E++W GRFRLE L+V+ G +WW A VV+K D                   +Y++HY  WD+ WDEWV+RD+LRWPV             V EVWC+G+ V GAWL+A V  ++ +   + +V ASS R +WV R   R +
Sbjct:   75 IHYYPPDRLAGLPRELLEDAVLANLDVKNL---AAMAAVSRAARRAASSDAAWRPQYARRFGAADDASEHFDFGASLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPVPEGRTGVVASGDDV-EVWCSGSAVPGAWLRAVVTAVEGELYCVGDV-ASSGR-LWVRRDRVRLI 302
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.060e-30
Identity = 68/158 (43.04%), Postives = 95/158 (60.13%), Query Frame = 3 
Query:  516 LKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDLYRY-RIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFK-----VRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKVSAGSGGDPTGD 971
             K  Y+ R  DP VGD+++V+W+G+FRLESL+V+ G +WW A VV K +   Y ++HYPGW+  WDEWV RDRLRW   + +L+   K         VEVWC G HV GAWL+A V ++++++V L  VL S     W    + R +  G   D  G+
Sbjct:  146 FKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRW--GNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGH--FWARTEHVRLIQKGPVDDDGGE 299
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.930e-28
Identity = 85/259 (32.82%), Postives = 109/259 (42.08%), Query Frame = 3 
Query:  381 ELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHD--GVLKRLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQK-----------------------------------VDLY------------------------------------RYRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKV 938
            +L  + SVS  +K  A  D  W   + R F      K G  +D    LK  Y  R RDP  GD++EV+W+GRFRLE L+V+ G +WW A V +K                                   VDL                                     RYR+HY  WDS WDEWVSR++LRWPV      T  ++   VEVWC+G  V GAWL+A V  +  D   + NV +S    +WV R   R V
Sbjct:  156 QLAHLASVSRGFKQLADSDASWQATYDRAFGNS---KAGVTYDYGASLKESYHQRIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEKRPNDIASNEEDMIPPEQFPPQHIDNQVVPHEQNHEVDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTSKRYRVHYLNWDSRWDEWVSREQLRWPVQEGKNCT-IEIGDDVEVWCSGNTVPGAWLRAVVDAVDDDLFCVGNVASSGH--LWVSRDRVRLV 408
[Close]
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.150e-22
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:  672 YRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVKGAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCR 932
            Y+IHYPGWD+ WDEWV R+RLRW +  + +  +F+V   VEVWCTG++V GAWL+A+VK IK +Q+ +  +L+S P  +WV +   R
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWAMHHNPME-NFQVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGP--LWVAKTRVR 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2112.5519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LI95_ECTSI2.470e-12972.01F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
W7T606_9STRA1.370e-4238.91F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA2.580e-4140.10F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZI68_9STRA4.910e-4141.58Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA1.100e-3636.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A403_9STRA1.820e-3634.03Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2SC81_9STRA1.450e-3133.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FY36_ECTSI1.060e-3043.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3K1B0_9STRA5.930e-2832.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2XXB7_9STRA6.150e-2250.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2112contigH-paniculata_contig2112:279..8371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.4
Seed ortholog evalue1.5e-108
Seed eggNOG ortholog2880.D8LI95
Hectar predicted targeting categoryother localisation
EggNOG OGs2D67V@1,2T127@2759
Ec32 ortholog descriptionF-box and Chromo domain-like protein
Ec32 orthologEc-14_003660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2249
Cds size927
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.615873-UTR-H-paniculata_contig2112:278..4991622929560.615873-UTR-H-paniculata_contig2112:278..499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2112 279..499 +
1691480914.2009885-UTR-H-paniculata_contig2112:278..4991691480914.2009885-UTR-H-paniculata_contig2112:278..499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2112 279..499 +
1622929560.6967812-UTR-H-paniculata_contig2112:7270..83711622929560.6967812-UTR-H-paniculata_contig2112:7270..8371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2112 7271..8371 +
1691480914.2711565-UTR-H-paniculata_contig2112:7270..83711691480914.2711565-UTR-H-paniculata_contig2112:7270..8371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2112 7271..8371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.627308-CDS-H-paniculata_contig2112:499..6701622929560.627308-CDS-H-paniculata_contig2112:499..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 500..670 +
1691480914.2162266-CDS-H-paniculata_contig2112:499..6701691480914.2162266-CDS-H-paniculata_contig2112:499..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 500..670 +
1622929560.6415236-CDS-H-paniculata_contig2112:1320..14601622929560.6415236-CDS-H-paniculata_contig2112:1320..1460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 1321..1460 +
1691480914.2262666-CDS-H-paniculata_contig2112:1320..14601691480914.2262666-CDS-H-paniculata_contig2112:1320..1460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 1321..1460 +
1622929560.652712-CDS-H-paniculata_contig2112:5083..52211622929560.652712-CDS-H-paniculata_contig2112:5083..5221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 5084..5221 +
1691480914.236031-CDS-H-paniculata_contig2112:5083..52211691480914.236031-CDS-H-paniculata_contig2112:5083..5221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 5084..5221 +
1622929560.6657326-CDS-H-paniculata_contig2112:5819..60001622929560.6657326-CDS-H-paniculata_contig2112:5819..6000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 5820..6000 +
1691480914.2446249-CDS-H-paniculata_contig2112:5819..60001691480914.2446249-CDS-H-paniculata_contig2112:5819..6000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 5820..6000 +
1622929560.683482-CDS-H-paniculata_contig2112:6973..72701622929560.683482-CDS-H-paniculata_contig2112:6973..7270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 6974..7270 +
1691480914.2535274-CDS-H-paniculata_contig2112:6973..72701691480914.2535274-CDS-H-paniculata_contig2112:6973..7270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2112 6974..7270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2112.5519.1prot_H-paniculata_contig2112.5519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2112 500..7270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2112.5519.1

>prot_H-paniculata_contig2112.5519.1 ID=prot_H-paniculata_contig2112.5519.1|Name=mRNA_H-paniculata_contig2112.5519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MAFNFVEMTYNGWRPRAGRTTQIHRMVRSRDKKMPSHVIHDLLARSMEWL
NLHELGEVCSVSHPWKAAAQEDGIWAFWWSRRFLEPPPPKRGRAHDGVLK
RLYQYRFRDPLVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVQKVDLYR
YRIHYPGWDSNWDEWVSRDRLRWPVDSSYLSTSFKVRQVVEVWCTGTHVK
GAWLQARVKQIKQDQVSLKNVLASSPRTIWVPRANCRKVSAGSGGDPTGD
RGRSRFSKLDISRQEALTRTLRGLSAGARIPLAGIAGLRGAVRRRIARGR
MVGFRSGW*
back to top

mRNA from alignment at H-paniculata_contig2112:279..8371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2112.5519.1 ID=mRNA_H-paniculata_contig2112.5519.1|Name=mRNA_H-paniculata_contig2112.5519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8093bp|location=Sequence derived from alignment at H-paniculata_contig2112:279..8371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACACGTCGCTGAGACGTTTGGTATGTAGTCACTCTGACGAGAGTGGTC
ATGCTCTATGGAAGGTGACGCACCCCATTGTTGGACAAGTCGCCCGGAAA
ACAAGCAAAGCTTTTAGCCCTTCGAAATCCGTCGCGGGTCTGAGAATTAA
CGTGTGCGGAAATTGCGCCAGATGAAGACAAAGTGATAGTTGATTTCAAA
ACAAAACATTTTCGAGGGTCTATGGCGTTCAATTTCGTGGAAATGACATA
TAACGGTTGGCGTCCAAGGGCAGGCCGGACAACCCAGATACACAGAATGG
TTCGCAGCCGCGACAAGAAGATGCCATCGCATGTTATCCATGACCTCCTG
GCGCGGAGTATGGAGTGGCTCAATCTGCACGAGCTGGGCGAAGTAAGTTG
TGTTGTGTCTTCATGTACAGACACTCCTTACAAGGATTTGACTTGGCTCA
TTTTAGAATTTTACCATAATAGTGCGGGCGATTACTGATGTGTGCAGTCG
AGCTGGTGTCCTAGTGGTGGTGTGCGGAATGGTTTATTGGTGTGTATTGA
GACTGAGGAATTGCAATACACAAATCATTGTCGGTGTTAATCCCTATGCG
ATGTCCATTGTCGTGTTGTTTTTTCCGCTCTGTCGATTGTTCGCTGGCTG
CTTTCGATTGTACACACAACACAGAAAGTGACGAAAGAAAGACGTATGCA
AAAGTACACGAAATCGCGCGTAATCTTAAATCTTTCCATGGTTTTTCTCA
CGCAACCCGACCTCTTTGTTTCCACCCTTCTTTCCATCTTTCCCATGAGG
TCGCCTTTGCTGCACTCAGTCAGCAATTATATGTATATGCATACCACTTC
AATCCAAGCAGTGCCTCGTTCATGGAACGTCCGATTCACATTCAGTTGGG
TTTCGCTGTTTGGTTGCTGTAACATACCACCCACTGTCGTTGATCACCGT
CTCTCATTATCGCAGTTGCTGGTGACGAAGACTGAGTGTATACTAACATC
GACTTTCTTTTACTAAATATACTGTCTGTACGTGGTGAAAAGGTCTGCAG
CGTAAGTCATCCCTGGAAAGCCGCGGCCCAGGAGGATGGGATCTGGGCAT
TTTGGTGGAGCCGAAGGTTTCTCGAGCCCCCCCCGCCGAAGCGAGGCCGC
GCTCATGATGGTGTTCTGAAGCGGTTGTATCAGTGAGTCTTGCAAAGTCC
GTTCCACAGCTGAGGGTGCAGAGCAGGATGCCTGCATACAAAGACGTGCA
TACGTTCCTGACACTTGATAGTTTGTCCGCGTAAGAGGGGATTCTTGAAT
AACACAGACAGACAGTCGCGGTTTTACATCATTACCTGCACGTTAATCTA
CCACGTCTTGACCAGATATAGGAGGACCATGGATGCTTTTTTTGGCTTGC
CGGAAAATCGTTCGTGAGCCTGTTTTTCAGCTGACTTGTACGCAATTCCC
GCGGTTCCTACTGACGTGACTATCTGCCTGTCGTATTTTCGTCGAGAGAT
GAGCAATGCAAGAGTACAAGTCGAGTGTATCCAATAAGTGTGGAACCTAC
ATGGAGTCAGTAGATGTTTTTCGAGGGCACGGAAAAACTAGTGGCATTAG
TCCAACCTCGTCAACAGCAATACGTCATCCATACGTACAAGCTAAATTCA
CTCGCTCTCTGCAATACAGGACGTAACTAGTGTTGGAGTTCTGTGGGAAG
TGCTGGTTTACGGTGCCGTCTATTTATTGGGCAAAACAAATGTGCTCGGA
ACGACCTCTACTAAGAATTAAGAATTAATCAAGCTACGTATTCATAATTC
ATTGGATTATGTCTCGGCTGTATTTACGTAACAAAATTCCATACGCCGGT
ATATAGGCATACTACTGCGCCGATCTACCGATATTTTCGCGATACAGGTA
GTACTTGTATATCGGGAAATATTGGTCAACCAACCCTTCTTGAGGTTTGT
CGGAAATACAAAAAAAGGACGCGATCTGGAGGGCTATCTATGGGTGCCCA
GTCATCACATATAATATACCTGTTACCTGTGTCCAACATACTTTTACCTT
TATCGACCGATACAGCTTGTATCGATTAACCCCCTTACACCTGGAAAAAG
AAAGAACTGAAGGGGAGAAACCACTTTGTTCGATGAAGCCCAACACCTGC
TTACCAACAACGATAAATATCAAATATGCCATGTCCCGACTGCTACGACT
GACTGTGGCAGACCGCCTGTTGTTGTGCCTGTGGGTACCAACACCCATAA
CAGGACGCCACACAAGCAGCCACTATCGTTCGCTACAGAAATCTCGGGAT
CTATATTGGTGCCTGCCAGCTCTTGTGTGCCGCAGATATAATGCTGCATG
CAGCAGTACGTGCACCAACTCTATGTATTGAATTCATATTGATAACAAAA
ACACGTCGAGATCCCGCTGCACTATTCGTCATTGATTTGTCGACATATGG
GTTTGATGTCAACCCGGTAAAAGTAATTCTGTCCGTCAAAGTTTGGTACC
CCTCCCTACCAACTTCTCCCCCCCCCCCCCCCATTTTTCGACGCGAGACT
GTCAAAGATCGCACATCGAAAAATCTCGAAATGCAGCCTTGCTGGTCTGT
AATAGCTAACCGTCAATTCAACATATACAGGGATGAAGGGGATGTGCAAT
TTGGGGCAGAGGGGTTAATGCCAGAGTTGGTCCGCAGCTTTTCTCTTTCA
AGTGTCCCGCATAATCTTCGTGGGGATGCGGTGCACCGGGCTGAGACTGA
GAAATGAAAGCAGCTATGATTCATGAGCACATTCGCGCGAAGAGTCAGGG
CGAAACGGTGCTCAATCGACGAAAAGTCGGCAGTTGCGGTTGATTGCCTT
GAGTCCTGTACCTTCCTAGCAGCACAAAAAGAGAAAGTTATGTGGTACCA
CAGGGCTCCGCGTGTGAAGTGCACGTGAAATAACATAACCATGTAGTGTC
CTATGATGTATCCCGACATGTATACAGATTTTACATTACTTGGGGATGCT
GAGAAAATCTCTGCAAGGCAAACGCTTGTGTCTCTTTCTCCAAGCGGGTC
CAATACTGAAGTCAGAATGTTTTACTTGTGTCGCCGAAGATGCGGCATGT
ACAGATAATAGTTAGTACGCTATAGGCAATGCCAAAGACGAATGTGAGTG
CGGTCATATTTGTTCTAGAGTGCGGTTCGCTCAAACAATCTACAGAATTG
GCATTCGGAAACGAGAACCCCCCCCCTACCCACAGAGCATATGCAACAGA
TGTGCGGGTATCCATAGATATTTGACGATGATGCCTGTCCATCTCACTGA
TTCTAGGCGCCCACGTACCTGACGAATTGATCTGTGCAGCGGAAAAGCGG
CGTGCTTCGGAAGCACAGGTATCATTTCACGCTCACAGCCTGCATTTTTC
GCACCGTTGCGGTTTTGCATCGCTGCATGGATGCTACAGGACCACGTGTT
CAAAAGTTCGCTTCAATCTTTGTGCGGGAGGAGTAATACGCGTAAACTGA
GCACGCACTGGAATATGACACCCCTTGGAGTACTGCAAAAAAATAGCAAC
GCTGTATCCACTTTTACGCGTGGTGCAGAACTAGCACCTGTCGTTAAGCA
GTTCTTGATCAATTTCCATACGAGCGACTTTACAGCCTCCCGACATACTA
CACTTTGCCGTCGTAGTGTAGGGAACGGCCCTTCGTCTTCCCAATCTGTC
GTGCGTGGGGTATGAATAGTCGGCCCCGGAGTATTCAAGATGCTGAAGCA
CATTCCCTTCGTCAACATTATACAATGTATCGATGTTGTGCCCCGCACGT
TACAGTCGTTATTCAAAGGTTTTTTGGCTCATGTTGAGAAATAAAAAATA
TGAAATGGAAATTGTTTTTTTTGCGCCTGCGGCGGCGCCTGTGACGAGCC
CCCCTCACGATCGCGGAGGGGGGGTATTTGACTCCGACCAAAGCACTCGA
GTGATGGGGCTGGCTTGCTTCGCTCGCACCAGTACAGGCCGACATTCGGG
AATGTGTTGTCATATCAATCGCTTCGCCGATGGACTAAAAATAGTAGTCT
TAACGAAATATACATAGCCCCAGAGTGGGCGATTTACGATTTACGATTTG
GCTTCGCAGCTCCTCTCTGTTCAAAATCGCGTAAGATTGAAAGCAGAACA
GAGGGATTCAAACGTACTAGCTGTCTATGCCTGAAGAGTGATATCTGCAA
CTAAAGGCGGCCTGAGAAAAACTGGCCAATATTTGAGCAGCAGAGCTAGC
TATCCAGCTACACTTCCGGGTCCACCGGGCTGCGAGTTTGAAGGACTCGC
TGAGCTCATCGACATCTTTCTTCTCAGCCGTAGCCCCCGAAGGACGTACA
TTTGTTTTTACACACTTTCGACCAGTCGCTCATAGACCCATAGTCAGGTA
TAACGACCGAATACCATATACCATGAGTAAGACATGCACAAATATACACA
CCAAACACTCAAATGGCAGGCTGAAAACACTACGAAGCTACAATGCAACG
CTTCGCAAGCCAGACATGAGTTTTGCGGTGTTTTTTACGTTTTCTTTAAT
GACACATGATGTATACCGACCTATCCGATATTTTCGGTGCCGATACATGA
TGAAAAAAAATGAAGTACTCTTACGTATGACGTGGGTGGGAGACCCACAC
TAGCAAATTGCATTGATACAGTCATGGTCCAACCCACCTCGGCGGGGGAA
GCTGAATCGCGATCAACATGTTTGGCGCCTTTCAGCTACCTCTCAAGTTG
ATATTGATTCGTCTGGCAAACCTTGGGGGGACCCGCGGTCGCTGCCGTCT
CTCAGGTATCGCTTTAGGGACCCACTCGTGGGCGATAAGATCGAGGTTTC
CTGGGAGGGAAGATTCCGGTTGGAATCTCTAGATGTGTTTGTGGGCAGGT
CTTGGTGGGAGGCTACGGTGGTCCAAAAGGTGGACCTATATAGGTGAGAG
AGGTTGGGTTCGGCGGGCGTTTGTGGTGTGTCGTGCTGTATCGGCTTTGC
GAAGCGCAGAGCATATCGTGTCATTGGTTGACGTGTGCTCTGGACAAACC
ACAGGGTTGTATTTCGTGTGTTGCTTTGAGCATTTCGCGTGTGCTGTTCT
CAGCGTGCACGGAGCAAGGGAATTGGTTGGCGCAGGCGCTTGACGAATTT
CCATATTGGCTTGGGGTTTTCGGTTCAATCTGCTGCTATTTGACAGTCCT
GGTGCTTGGATGCTTACTACACATTTTACGTGTGACGGCACATCCGGCGT
TTCCAGTGTGAACAAATCCTGTTTTGATCATCATCTTGTGATAGAGACCC
TACGGAATACACCGTACGGAATACACTCCACTTTAGTTGCAGAGATGGTG
AATGTGAATGGACCATGGGACTTTGCCCTCGCAATTCATTTCCCCGAGGC
TGCTTTGTTGTAGTGTTGCTTCGCAACAACGTGAATCGATATGCTTCGCT
CGACGGAGTTTTCTTTTCAGCCGTGCCCCACCCCCACACCTGCTAACGTA
CCCAACTGCCTCGCGCAACTTACCAACACACGCACCTCAAGGTACCGCAT
CCACTACCCCGGGTGGGATAGCAACTGGGACGAGTGGGTCAGCCGCGATC
GACTAAGGTGGCCAGTGGACTCGTCCTACCTCTCCACGTCGTTCAAGGTC
CGGCAGGTCGTCGAGGTGTGGTGCACAGGCACCCACGTCAAGGGTGCTTG
GCTTCAGGCCAGAGTCAAGCAGGTGCAGACACGAGAACAGGTCGGCTGGC
TAGCTACCATCGTGCTGGTTTGTAATCTTCTACTTTATGGTATTGCACGT
TTTGTGTTCATGTATAACGTATAGTGAAAAAAACTACGGAAGTGAATGCG
TAGCTGATGCAGCATTGCAATCCTCCTTTGCAAGTGTTTTGGGGTAATGT
GGCATTCTTGAATATTTCATACACACTCCTCGGTTTGCCCTTGTCGGTTT
GTTTGTTAACTGTTGTGTTGTTTGTCTTGTTGACGTGTACCATGCTAGTT
TTGAAGATTGTTGAGGCGTTTTGCATGTGTCAAACTTGAGTTGTACGTTT
CATGTACATAATGGTGGACCGAGCGGTCTTGATGCATGATTTTATATACG
GAGTAAAACGTATGACTTGCGCAGTATTGCAACTATTAATAGCGAACTCC
GCACTGTTGTTTTTAGCCTTGGAGACATTTAAACGTCCCAGGTATTTACG
TTTACAGGTCTTGTTTGAGTCTGAAGCACGATGCACGATGGGCTGTTCTG
GTTGGCCTCGTTGTGTGCCTGTGGCCAAGCGGGCTCATGTTTTATTCTAT
GTAGGAACTGTAGTAGCCATCACGTCCCCCGACGCGCGAGTAACGACCAT
AATTACTGCAACTTGCGCAGGTGTATGCCGTATCGCTTTTAAAGCGAGAA
GATATCCAACGCTTGCAGATCTCCGGCCAGCATCCATGACTTTGTCCGCA
ATGGAGTGTGCAGCACTCACCAACTATTTAGGGGTAGGCGCCGTATTTGC
CCACCTCTGCCAGCAAAGTTAAGAAAGAAAACTTGTATGTGATGCCTAAA
TACACTCAGGTAAAGAGTAGACCGCCGCCCCCTCTCTTTTTGATGTTCCA
AGCTGCACAATTGCAAGCCATAGTGTACCCTGGCCTGCCATGAAGTAAAC
CGCCGGTCTCTTCCTCTATTCTCACTCTTGCGAACCTTCCCGCAGATCAA
GCAAGACCAAGTCAGCCTGAAAAACGTGCTCGCCTCCTCGCCTCGCACCA
TATGGGTACCCCGGGCCAACTGTCGCAAAGTATCTGCGGGCTCTGGCGGT
GATCCCACAGGGGACCGGGGGCGAAGCAGATTCTCAAAACTGGACATATC
TCGACAGGAGGCCTTGACACGAACTCTCAGGGGACTGTCGGCCGGTGCCC
GCATCCCGCTAGCCGGTATTGCCGGCTTGCGTGGTGCAGTTCGGCGGAGA
ATAGCCCGTGGCAGGATGGTTGGATTCCGTAGCGGGTGGTAACGTGTTCG
TGGATCGTTCTGGGGAACGCTCCGGATGCTGCGGCAGGGTACTCCAGCAC
CGTACATTCATGATAACCAGGAGTTGTTGGATCTTGGAATTGGTGGCGTC
TCCCATTGTTTGGGGGAGGACCGTTGTTGCCTCTACTGGGTATTGCAATT
ACAGATGGAAATGCTGCAAGTTATTCTATACTTGAACATGCGCAAGATTC
GGTGAAAAGTTGGCGTTTGGCTGGTGTCGTTGTGGTCATCTTCCCACAGG
GTGAACAAGGCTTTGTGCACGCCATCGTTAAGGGTGTCAAGTGTTCGTTC
TCCCCCCCTCGTCGTTTGCCTAATGTGGTGCGTGTACGGGTGGATGTAGG
TTTGGTGCCGGAGGCGGGTTGCGTTGTTATGTGCCTCAGAGACTGATGAG
AGAGGATCGCTTTTTTTGGCAAGAGTGACGCGGGCGGTCGTGTAGACATG
TTTGACAACCAGAGAGTCAGATGTGGTTTTTATATCAAATGAATGAGTGT
TAATACAGTGTGCGCAGCAGTTGTCGGCATTCTGAGCTTGGACGAAGTAT
GTAATATGCACCAGCGCATCGCATGCCTTCACCTACTGTAGCCTGGTATC
GTGGATGCCACATTTGTAGGGCATGTTTTTATTGGGTCTTGGATATTGGG
AAGCGTGATGTACAGTTTGTCAATTTCTGTTAGGTTTCTGTTGTAAGTTA
GACGAGGCTATTAACCTTTACGTTGTTGCAGTATTTTGTTGTATTTTAGC
GAATTTTTTGTCATATTCTGCTTCGTGTTGTTGATAAAGTGTGCCCTCGC
AGGTCCGCTAGGTCCGCGCAATCGCAAGCTCAACTCAACACTCGGGTGAA
ATGGTTTACTGTGCTCGCAGATGTGCTATTTTTGCTGTATATTGTTCGGC
GCGAGAGTCGCCTCTCCGGTCGGATTGCGTCTTTTTATGCGTGTAGCGTG
TGGTGTTATTGATGTTGCCATTGAGCTTTGCAAGTTTGCTGAGTGCGTGC
GTTGTCATACTCAAAACTTGGTGCACTATTCTGCTGCGCCTGCCAAAGAC
AATACTATTGAACTAGAAAACGAATGAAAACCAATGAAATCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2112:279..8371+

>mRNA_H-paniculata_contig2112.5519.1 ID=mRNA_H-paniculata_contig2112.5519.1|Name=mRNA_H-paniculata_contig2112.5519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig2112:279..8371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTTCAATTTCGTGGAAATGACATATAACGGTTGGCGTCCAAGGGC
AGGCCGGACAACCCAGATACACAGAATGGTTCGCAGCCGCGACAAGAAGA
TGCCATCGCATGTTATCCATGACCTCCTGGCGCGGAGTATGGAGTGGCTC
AATCTGCACGAGCTGGGCGAAATGGCGTTCAATTTCGTGGAAATGACATA
TAACGGTTGGCGTCCAAGGGCAGGCCGGACAACCCAGATACACAGAATGG
TTCGCAGCCGCGACAAGAAGATGCCATCGCATGTTATCCATGACCTCCTG
GCGCGGAGTATGGAGTGGCTCAATCTGCACGAGCTGGGCGAAGTCTGCAG
CGTAAGTCATCCCTGGAAAGCCGCGGCCCAGGAGGATGGGATCTGGGCAT
TTTGGTGGAGCCGAAGGTTTCTCGAGCCCCCCCCGCCGAAGCGAGGCCGC
GCTCATGATGGTGTTCTGAAGCGGTTGTATCAGTCTGCAGCGTAAGTCAT
CCCTGGAAAGCCGCGGCCCAGGAGGATGGGATCTGGGCATTTTGGTGGAG
CCGAAGGTTTCTCGAGCCCCCCCCGCCGAAGCGAGGCCGCGCTCATGATG
GTGTTCTGAAGCGGTTGTATCAGTATCGCTTTAGGGACCCACTCGTGGGC
GATAAGATCGAGGTTTCCTGGGAGGGAAGATTCCGGTTGGAATCTCTAGA
TGTGTTTGTGGGCAGGTCTTGGTGGGAGGCTACGGTGGTCCAAAAGGTGG
ACCTATATAGGTATCGCTTTAGGGACCCACTCGTGGGCGATAAGATCGAG
GTTTCCTGGGAGGGAAGATTCCGGTTGGAATCTCTAGATGTGTTTGTGGG
CAGGTCTTGGTGGGAGGCTACGGTGGTCCAAAAGGTGGACCTATATAGGT
ACCGCATCCACTACCCCGGGTGGGATAGCAACTGGGACGAGTGGGTCAGC
CGCGATCGACTAAGGTGGCCAGTGGACTCGTCCTACCTCTCCACGTCGTT
CAAGGTCCGGCAGGTCGTCGAGGTGTGGTGCACAGGCACCCACGTCAAGG
GTGCTTGGCTTCAGGCCAGAGTCAAGCAGGTACCGCATCCACTACCCCGG
GTGGGATAGCAACTGGGACGAGTGGGTCAGCCGCGATCGACTAAGGTGGC
CAGTGGACTCGTCCTACCTCTCCACGTCGTTCAAGGTCCGGCAGGTCGTC
GAGGTGTGGTGCACAGGCACCCACGTCAAGGGTGCTTGGCTTCAGGCCAG
AGTCAAGCAGATCAAGCAAGACCAAGTCAGCCTGAAAAACGTGCTCGCCT
CCTCGCCTCGCACCATATGGGTACCCCGGGCCAACTGTCGCAAAGTATCT
GCGGGCTCTGGCGGTGATCCCACAGGGGACCGGGGGCGAAGCAGATTCTC
AAAACTGGACATATCTCGACAGGAGGCCTTGACACGAACTCTCAGGGGAC
TGTCGGCCGGTGCCCGCATCCCGCTAGCCGGTATTGCCGGCTTGCGTGGT
GCAGTTCGGCGGAGAATAGCCCGTGGCAGGATGGTTGGATTCCGTAGCGG
GTGGTAAATCAAGCAAGACCAAGTCAGCCTGAAAAACGTGCTCGCCTCCT
CGCCTCGCACCATATGGGTACCCCGGGCCAACTGTCGCAAAGTATCTGCG
GGCTCTGGCGGTGATCCCACAGGGGACCGGGGGCGAAGCAGATTCTCAAA
ACTGGACATATCTCGACAGGAGGCCTTGACACGAACTCTCAGGGGACTGT
CGGCCGGTGCCCGCATCCCGCTAGCCGGTATTGCCGGCTTGCGTGGTGCA
GTTCGGCGGAGAATAGCCCGTGGCAGGATGGTTGGATTCCGTAGCGGGTG
GTAA
back to top