mRNA_H-paniculata_contig21119.5518.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21119.5518.1
Unique NamemRNA_H-paniculata_contig21119.5518.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21119.5518.1 vs. uniprot
Match: D7FWM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 7.370e-93
Identity = 230/457 (50.33%), Postives = 271/457 (59.30%), Query Frame = 1 
Query:    1 QPNGRAVAYTMAACNKAKMWKQTLSLDAYTKKMGIVSSMEGLVLVARAYASSKQSQGVLQVLSRAEEICASEAVEIKGEGRGRQQGGGGQAAARL----HPPAELYEVAARTLALAGLWEGAASAVRRLEKLPSVRKDQQ------RQTAASLNTYELIMGAAAAAGQHEAVLLEADAARAALAGAREGPSPAGRRNRGTSADEDTDVDGNDAIGASGNGGELNAAALAHEVAAAGRLGLWNRVSPIMARAMRSPSLRGVAGARLYAALISAAAACGRPERGLEIFREMEVEAKA----------TAAAGVGGLNSPLAVEIDGVSWKGGRGGDRGGGRLPPLDGA------------------TFLAALDACAAVGGEESVTLAIGVTKVAAAATAATKGEMADGEEGGRVEGDVAGFGILSAHKLAAVLERAGEVCGAAGASSTADALAAKAVQI 1257
            +P+GRA+A+ MAACN A+ W+QT+SL  Y  KMGI SSMEGLVLVARAY + K  Q VL VL+ AEE C+                 GG+ AA +    HPPAELYEVAAR+LALAG+WE AASAVRRLEKL S RK ++      R +AA L TYE+I+GAA AAG  EAVL +ADAARAAL  A   PS +   + G S        G    G  G   ELN  ALAHE AAAGRLG W+RVSP++A+AMRSP LRGVAG RLYAALI+AAAACG+P RGLE+F+EM  E+++                  L +  AV   GV W     G+ G      ++ A                  TFLAALDACAAVGGEESVTLAIGVTK A                        A    LS+ +LAAVL +AGEVC A G  STA ALAAKA Q+
Sbjct:  619 KPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSXXXXXXX-----XXXXRGGERAAAVPAVKHPPAELYEVAARSLALAGMWEEAASAVRRLEKL-SPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSSSSGYDHGAS-------QGGQGRGGGGGVRELNPGALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGCRLYAALITAAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXXVDAAVLGAAAAVVSGGVEWSDSMSGEDGTTGEVAMEEAFSRSGXXXXXXXXXXXXXTFLAALDACAAVGGEESVTLAIGVTKDA------XXXXXXXXXXXXXXXXXDAKKPRLSSRQLAAVLSKAGEVCAAVGKESTAIALAAKAEQL 1056
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21119.5518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM3_ECTSI7.370e-9350.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21119contigH-paniculata_contig21119:378..3917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.0
Seed ortholog evalue1.4e-80
Seed eggNOG ortholog2880.D7FWM3
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Exons3
Model size1800
Cds size1323
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21119.5518.1prot_H-paniculata_contig21119.5518.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21119 408..3470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.372971-UTR-H-paniculata_contig21119:377..4071622929560.372971-UTR-H-paniculata_contig21119:377..407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21119 378..407 +
1691480914.143143-UTR-H-paniculata_contig21119:377..4071691480914.143143-UTR-H-paniculata_contig21119:377..407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21119 378..407 +
1622929560.5821872-UTR-H-paniculata_contig21119:3470..39171622929560.5821872-UTR-H-paniculata_contig21119:3470..3917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21119 3471..3917 +
1691480914.1899614-UTR-H-paniculata_contig21119:3470..39171691480914.1899614-UTR-H-paniculata_contig21119:3470..3917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21119 3471..3917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.3846798-CDS-H-paniculata_contig21119:407..4871622929560.3846798-CDS-H-paniculata_contig21119:407..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21119 408..487 +
1691480914.154951-CDS-H-paniculata_contig21119:407..4871691480914.154951-CDS-H-paniculata_contig21119:407..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21119 408..487 +
1622929560.3954723-CDS-H-paniculata_contig21119:1668..19361622929560.3954723-CDS-H-paniculata_contig21119:1668..1936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21119 1669..1936 +
1691480914.1651287-CDS-H-paniculata_contig21119:1668..19361691480914.1651287-CDS-H-paniculata_contig21119:1668..1936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21119 1669..1936 +
1622929560.4069898-CDS-H-paniculata_contig21119:2495..34701622929560.4069898-CDS-H-paniculata_contig21119:2495..3470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21119 2496..3470 +
1691480914.1783876-CDS-H-paniculata_contig21119:2495..34701691480914.1783876-CDS-H-paniculata_contig21119:2495..3470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21119 2496..3470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21119.5518.1

>prot_H-paniculata_contig21119.5518.1 ID=prot_H-paniculata_contig21119.5518.1|Name=mRNA_H-paniculata_contig21119.5518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=441bp
MAACNKAKMWKQTLSLDAYTKKMGIVSSMEGLVLVARAYASSKQSQGVLQ
VLSRAEEICASEAVEIKGEGRGRQQGGGGQAAARLHPPAELYEVAARTLA
LAGLWEGAASAVRRLEKLPSVRKDQQRQTAASLNTYELIMGAAAAAGQHE
AVLLEADAARAALAGAREGPSPAGRRNRGTSADEDTDVDGNDAIGASGNG
GELNAAALAHEVAAAGRLGLWNRVSPIMARAMRSPSLRGVAGARLYAALI
SAAAACGRPERGLEIFREMEVEAKATAAAGVGGLNSPLAVEIDGVSWKGG
RGGDRGGGRLPPLDGATFLAALDACAAVGGEESVTLAIGVTKVAAAATAA
TKGEMADGEEGGRVEGDVAGFGILSAHKLAAVLERAGEVCGAAGASSTAD
ALAAKAVQIAELANKSSGSGAGAQIEVDTVGSSDGDALPR*
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mRNA from alignment at H-paniculata_contig21119:378..3917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21119.5518.1 ID=mRNA_H-paniculata_contig21119.5518.1|Name=mRNA_H-paniculata_contig21119.5518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3540bp|location=Sequence derived from alignment at H-paniculata_contig21119:378..3917+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCTAACGGCAGGGCGGTAGCGTACACGATGGCTGCGTGCAACAAGGC
GAAGATGTGGAAGCAGACGCTCTCCCTTGACGCCTATACGAAGAAGATGG
GAATCGTGAGGTGATTGTTTTTTGTTCGTGTGCACCTAGATCGTGAACCT
GTATCTACGTAGATACAGTACCGCCGCCATAAGAAGAGAAACTTACTCTG
GGTGAGGCTCTATTTATTTTATTATATTTTATTATTGTGGCGATTACGAG
CGAGCAGCGGTGGCTAGTGTATGGGAATTAGTATGGGGCTGCCAGTTGTT
GAGTACATGGTAAAAGTTCTTGGAGAAAATTTGTTCATTTTTTTTTTTTA
TGATAAACAAATTGAAATGGATTTTGGACTAGATTTTTAATATTCCGTCG
ATATTAACAACATTCAGTGTGAGTTTCCATATAGGATGAGATACGATCCA
CCCGACATAACATTGTCTTGTGTATGGCACAGAGGAAGTACGTATACTTC
CTCTGTACCATAAATGAAGTCGGTTGTGTTTATAGAGGCAGGTAACTTTT
TTTCTTTTTTTTTTTGTTATAACCCTACCTGTTTCGGAGAAATCCATTGG
AAGCACATGCGGCACAAAAAAATGTCGCCCGAAAAACATGCTATGCTTCG
CTCCTTTTCGTATTTTCCCAATGTAACAACGTGAAAAAAAAAAAAAAAAC
TTGAGCTGGCAGTAGCTGTGATACACAAATCAGAATGCATATCGGAATGG
CGCATTTGAGTTTATCACACTTGAGCTTTCCAAAGATTCCAACCGCAGCC
TTTAAACAGACTTGGAGGTCTGGAGAGATAATCTGCAAAACACAATGGAC
TTCACATGTAGCACAGAGGAAGTATATGCTTGATTCATGTATACAATGTC
TCCTGTGGGGTAAAGATCTCTGTAAGGATTACAGAATATGCGTTTTCATC
GTCATGATCCAGAAATTTGTCTGTTCGAACTCATGGTCAACCCTGGTAGA
TGATAAGATATTGGTTACGCCGCACCGGTTCTCCTCTCCCAGCCCGCGAG
GTGTTACTCGGACGGAACTAGGTAAACCGCTGACGTATATTTATATCGGG
GTCGAGAAGGAACGCGACGGCTCTTTTCGCTAGCGTGAGGGCGTCATGCC
GGTTCAAAGATAGCAACTGATCCCACACGAGGATCGATCACCTCTATGAA
AGATGCCAGTGAAATACAAGCCCATGCTGGATTTTACGTGTTTGCTTGCC
ATATCTCTCCACCGGCGCTTTTTCTTTTTTTTCTTGCGTAGCTCCATGGA
GGGGCTAGTCCTGGTCGCGCGGGCCTACGCTTCTAGCAAGCAATCGCAGG
GAGTCCTGCAGGTCTTGTCCAGAGCAGAGGAAATTTGTGCCTCGGAAGCG
GTCGAGATTAAGGGTGAAGGAAGAGGAAGACAGCAGGGTGGTGGTGGACA
GGCGGCAGCCCGTCTCCACCCGCCTGCTGAGTTGTATGAAGTCGCTGCTA
GGACTTTGGCGCTCGCAGGATTATGGGAGGGAGCCGCGAGCGCTGTTAGA
AGGCTGGAGGTGAGTATTTGGCGTTTGTTTCTGATACCGGTCCAGGAGGC
TTGTTTTTGTTTCCTCGTTTCACAGACGGCGCCCGCGATCGCGCGCGCCA
GACGGAAGGCTTCCTTGCTTGGTACTGTGCGAGATGTTTACATTGCCGGG
CACTGTGCTGTACCGTATGCACTATGCTGTGCCGATGGCTGGTGCTCACG
TTTCAGGCTAGGGATTATTCGGGTACTTGTAATTGTGTGCAATTTCAGGA
TTTCTGTCTAATGTATTTAGCCAGGCGAAGACACCCAACAGCGCTGATTG
AGTGTTGAGTATTCCCGGATGCAGATATGGACTCTATTGGAATGGTGATG
CCGTGATACAGTAGGCATCCCGCTTTTGATCTTTCCCCCTTTGAAGTTTT
TACCAAAACGCCGTTTGCGCCCTTTTTATTGGCAAGAATAGCAGGGCACA
CCGATTCCCGGTTTTTGCCATTCTTCTGATGTATGTATATGTATATGTAT
ATGTATATATATATATATACATATATATTTCTTTTTACGCTTCTGGTGTG
TGTATGTGTACTTTGCAGAAATTGCCCTCCGTTCGCAAGGACCAACAGCG
CCAAACCGCGGCCAGCCTCAACACCTACGAACTCATCATGGGTGCAGCCG
CCGCCGCCGGTCAACACGAGGCCGTCTTACTTGAGGCGGACGCAGCGCGC
GCCGCCCTCGCTGGTGCACGAGAAGGTCCCTCCCCCGCCGGCAGACGTAA
CCGTGGGACCTCCGCCGATGAAGACACTGATGTCGACGGTAACGACGCCA
TTGGTGCTAGTGGCAACGGCGGGGAGCTGAACGCAGCGGCGCTCGCGCAC
GAGGTTGCGGCGGCCGGCAGACTCGGCCTCTGGAATCGAGTTTCACCGAT
AATGGCGAGGGCGATGAGGTCGCCTTCCCTGAGAGGCGTCGCCGGCGCGA
GGTTATACGCGGCGCTCATCTCCGCCGCCGCCGCGTGTGGTCGACCTGAG
CGTGGGTTGGAAATTTTCCGTGAAATGGAAGTCGAGGCTAAGGCGACGGC
GGCGGCCGGGGTGGGGGGGCTGAATTCGCCGCTGGCAGTGGAAATTGATG
GCGTTTCATGGAAGGGTGGACGGGGCGGCGACAGGGGCGGAGGACGGTTG
CCTCCGCTGGATGGGGCTACGTTTTTGGCAGCGCTGGATGCGTGCGCGGC
TGTCGGGGGTGAAGAGTCGGTCACCCTTGCAATTGGAGTTACGAAAGTGG
CGGCGGCAGCGACAGCGGCCACGAAGGGGGAAATGGCGGACGGAGAAGAG
GGAGGAAGAGTGGAGGGGGATGTTGCGGGTTTTGGTATCCTATCAGCCCA
CAAACTTGCTGCCGTGCTCGAGCGTGCGGGGGAAGTTTGTGGAGCAGCTG
GGGCGTCTTCAACCGCGGACGCTTTGGCTGCAAAGGCTGTGCAAATTGCG
GAGTTGGCGAATAAAAGCAGTGGTAGTGGTGCGGGTGCGCAGATAGAAGT
GGACACGGTTGGCTCATCCGACGGTGATGCTCTGCCGAGATGACAAAAAG
AGGCGTGGCAAGTTGTTTGTTAGAGAGAGCAGTTGTTCATGGCGGGGCTA
TGGAGTGTGGTGACGCTCAGAGTTATAGGATGGACCCCACAAAAAGTGTT
CTACAACAGTGTTTGATCATTGGATGCAGGCGTTGTTTTTTCAAAATACC
TTATGTTTGTTTGTGGATTCGTCCCATGCACACATGGTAAGATTCACCAC
CGGTGAGATTTAGAACATAACCCAGAAACTGTTTGAGGTATTCGTGTGAT
AATAATCGAGGTAAAGCAGGGTGAGTTTTTTTTTTTTTTTCCAACTTCTG
TCAAAATGGTCATGGGTTTGTTCGTATCGAGCACGATGAGTTAGTTTCAT
TTGGGTTCTACGTTATACAGACAGTAATTTTTTAAAACTGTCCGAAGCTT
TCTTTGATTTAGTGCCAATGTCAAATAAAGAGAACCCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21119:378..3917+

>mRNA_H-paniculata_contig21119.5518.1 ID=mRNA_H-paniculata_contig21119.5518.1|Name=mRNA_H-paniculata_contig21119.5518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2646bp|location=Sequence derived from alignment at H-paniculata_contig21119:378..3917+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCGTGCAACAAGGCGAAGATGTGGAAGCAGACGCTCTCCCTTGA
CGCCTATACGAAGAAGATGGGAATCGTGAGATGGCTGCGTGCAACAAGGC
GAAGATGTGGAAGCAGACGCTCTCCCTTGACGCCTATACGAAGAAGATGG
GAATCGTGAGCTCCATGGAGGGGCTAGTCCTGGTCGCGCGGGCCTACGCT
TCTAGCAAGCAATCGCAGGGAGTCCTGCAGGTCTTGTCCAGAGCAGAGGA
AATTTGTGCCTCGGAAGCGGTCGAGATTAAGGGTGAAGGAAGAGGAAGAC
AGCAGGGTGGTGGTGGACAGGCGGCAGCCCGTCTCCACCCGCCTGCTGAG
TTGTATGAAGTCGCTGCTAGGACTTTGGCGCTCGCAGGATTATGGGAGGG
AGCCGCGAGCGCTGTTAGAAGGCTGGAGCTCCATGGAGGGGCTAGTCCTG
GTCGCGCGGGCCTACGCTTCTAGCAAGCAATCGCAGGGAGTCCTGCAGGT
CTTGTCCAGAGCAGAGGAAATTTGTGCCTCGGAAGCGGTCGAGATTAAGG
GTGAAGGAAGAGGAAGACAGCAGGGTGGTGGTGGACAGGCGGCAGCCCGT
CTCCACCCGCCTGCTGAGTTGTATGAAGTCGCTGCTAGGACTTTGGCGCT
CGCAGGATTATGGGAGGGAGCCGCGAGCGCTGTTAGAAGGCTGGAGAAAT
TGCCCTCCGTTCGCAAGGACCAACAGCGCCAAACCGCGGCCAGCCTCAAC
ACCTACGAACTCATCATGGGTGCAGCCGCCGCCGCCGGTCAACACGAGGC
CGTCTTACTTGAGGCGGACGCAGCGCGCGCCGCCCTCGCTGGTGCACGAG
AAGGTCCCTCCCCCGCCGGCAGACGTAACCGTGGGACCTCCGCCGATGAA
GACACTGATGTCGACGGTAACGACGCCATTGGTGCTAGTGGCAACGGCGG
GGAGCTGAACGCAGCGGCGCTCGCGCACGAGGTTGCGGCGGCCGGCAGAC
TCGGCCTCTGGAATCGAGTTTCACCGATAATGGCGAGGGCGATGAGGTCG
CCTTCCCTGAGAGGCGTCGCCGGCGCGAGGTTATACGCGGCGCTCATCTC
CGCCGCCGCCGCGTGTGGTCGACCTGAGCGTGGGTTGGAAATTTTCCGTG
AAATGGAAGTCGAGGCTAAGGCGACGGCGGCGGCCGGGGTGGGGGGGCTG
AATTCGCCGCTGGCAGTGGAAATTGATGGCGTTTCATGGAAGGGTGGACG
GGGCGGCGACAGGGGCGGAGGACGGTTGCCTCCGCTGGATGGGGCTACGT
TTTTGGCAGCGCTGGATGCGTGCGCGGCTGTCGGGGGTGAAGAGTCGGTC
ACCCTTGCAATTGGAGTTACGAAAGTGGCGGCGGCAGCGACAGCGGCCAC
GAAGGGGGAAATGGCGGACGGAGAAGAGGGAGGAAGAGTGGAGGGGGATG
TTGCGGGTTTTGGTATCCTATCAGCCCACAAACTTGCTGCCGTGCTCGAG
CGTGCGGGGGAAGTTTGTGGAGCAGCTGGGGCGTCTTCAACCGCGGACGC
TTTGGCTGCAAAGGCTGTGCAAATTGCGGAGTTGGCGAATAAAAGCAGTG
GTAGTGGTGCGGGTGCGCAGATAGAAGTGGACACGGTTGGCTCATCCGAC
GGTGATGCTCTGCCGAGATGAAAATTGCCCTCCGTTCGCAAGGACCAACA
GCGCCAAACCGCGGCCAGCCTCAACACCTACGAACTCATCATGGGTGCAG
CCGCCGCCGCCGGTCAACACGAGGCCGTCTTACTTGAGGCGGACGCAGCG
CGCGCCGCCCTCGCTGGTGCACGAGAAGGTCCCTCCCCCGCCGGCAGACG
TAACCGTGGGACCTCCGCCGATGAAGACACTGATGTCGACGGTAACGACG
CCATTGGTGCTAGTGGCAACGGCGGGGAGCTGAACGCAGCGGCGCTCGCG
CACGAGGTTGCGGCGGCCGGCAGACTCGGCCTCTGGAATCGAGTTTCACC
GATAATGGCGAGGGCGATGAGGTCGCCTTCCCTGAGAGGCGTCGCCGGCG
CGAGGTTATACGCGGCGCTCATCTCCGCCGCCGCCGCGTGTGGTCGACCT
GAGCGTGGGTTGGAAATTTTCCGTGAAATGGAAGTCGAGGCTAAGGCGAC
GGCGGCGGCCGGGGTGGGGGGGCTGAATTCGCCGCTGGCAGTGGAAATTG
ATGGCGTTTCATGGAAGGGTGGACGGGGCGGCGACAGGGGCGGAGGACGG
TTGCCTCCGCTGGATGGGGCTACGTTTTTGGCAGCGCTGGATGCGTGCGC
GGCTGTCGGGGGTGAAGAGTCGGTCACCCTTGCAATTGGAGTTACGAAAG
TGGCGGCGGCAGCGACAGCGGCCACGAAGGGGGAAATGGCGGACGGAGAA
GAGGGAGGAAGAGTGGAGGGGGATGTTGCGGGTTTTGGTATCCTATCAGC
CCACAAACTTGCTGCCGTGCTCGAGCGTGCGGGGGAAGTTTGTGGAGCAG
CTGGGGCGTCTTCAACCGCGGACGCTTTGGCTGCAAAGGCTGTGCAAATT
GCGGAGTTGGCGAATAAAAGCAGTGGTAGTGGTGCGGGTGCGCAGATAGA
AGTGGACACGGTTGGCTCATCCGACGGTGATGCTCTGCCGAGATGA
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