mRNA_H-paniculata_contig21050.5503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21050.5503.1
Unique NamemRNA_H-paniculata_contig21050.5503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: D8LNP4_ECTSI (PIH1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP4_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 7.460e-93
Identity = 151/230 (65.65%), Postives = 183/230 (79.57%), Query Frame = 1
Query:    1 LMLMKETNPAEFEQYIQMAADAAKLATEQPEVFASLVGGGGTGLDHDQGALTPARVEQLRAMEAAAELTGT-KIKGHEGKG---EINIPGTGKTTDSGGVKTKTQGIMISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKLT 678
            LM +K+T+P +F +Y+QMAADAAKLA E+P+VF  L+ G G   D D   LT A+ E+ RAM+AA+ELTG  K KG    G   +IN+PG G    +GGVK KT GI+ISPRPGFVIK+K++  G+KVF+N+CQHERIG+S M+KKLD+EG EVEGLNIPMSVGPPSVDKDNAG EC+VYDVIINP  +EEC ADKTG +RDW+C LA+QSVM KH+CRLD KYKLPKLT
Sbjct:   70 LMRLKDTDPDQFAEYVQMAADAAKLAEERPDVFEQLMRGDGAAGDED---LTAAQAEKRRAMDAASELTGANKRKGDSKDGVDMDINLPG-GAKLGAGGVKDKTNGIVISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQEVEGLNIPMSVGPPSVDKDNAGLECIVYDVIINPKTIEECGADKTGGQRDWVCHLAMQSVMSKHDCRLDPKYKLPKLT 295          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A835ZG52_9STRA (Pre-RNA processing PIH1/Nop17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG52_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.070e-45
Identity = 95/214 (44.39%), Postives = 129/214 (60.28%), Query Frame = 1
Query:   46 IQMAADAAKLATEQPEVFASL--VGGGGTGLDHDQGALTPARVEQLRAMEAAAELTGTKIKGHEGKGEINIPGTGKTTDSGGVKTKTQGIMISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEE-GNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKLT 678
            I  AA  A L    PE FA L  +  G  G      A   A +E L A+EAA E           +GE+++PG G   ++G VK K  G+ ++P PGFV+K+K +  G KVF+N+C  + IG     K+LDE+ G EVE +N+P+SVGPP    D AG    VYDV++NP  +EE  AD+TGA+RD++C +A + V RKH+CRLD +YKLPK T
Sbjct:    5 IGFAAKLAALQQSDPEAFAQLAQLASGDAGSSAQGPASGAALLEALAALEAAGES----------RGELDLPGGGVLGETG-VKQKDAGVKMTPDPGFVVKTKELDTGCKVFLNVCSSDLIGVPGPCKRLDEDTGEEVEVINMPVSVGPPREYADKAGGAATVYDVVVNPKVLEEVDADRTGAQRDFVCHMAREYVERKHKCRLDERYKLPKTT 207          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A7S2B8J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8J4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.070e-40
Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 1
Query:   10 MKETNPAEFEQYIQMAADAAKLATEQPEVFASLVGGGGTGLDHDQGALTPARVEQLRAMEAAAELTGTKIKGHEGKGEINIPGTGKTTDSGGVK-TKTQGIMISPRPGFVIKSKVM-----GPGI--KVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKLT 678
            ++  +PA FE+ +Q AA  A++AT   E                           L  + AA +       G EG   + +PG  K    G +K T   GI I+P PGFVIK+K +      PG   KVFIN+CQHE + K  M K+L++EG EVEGLN+P+S+GPP    D  G + +VYD +++P+ ++E K D+TG ++++LCQLALQ V +K++C LD KYKLPK T
Sbjct:   51 LRAQDPAAFEEMMQAAALQAQMATNPDEA--------------------------LGGLHAAMQAQHAAKVGEEG---VQLPGDKKMGLDGTMKQTNEAGIDITPEPGFVIKTKRVDQAGTAPGAVGKVFINLCQHEGVEKPVMKKRLNDEGEEVEGLNVPLSIGPPRACDDAKGVKAIVYDCVVHPSVIDESKEDETGNQQNFLCQLALQYVEQKYKCELDRKYKLPKAT 252          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A2R5GMS9_9STRA (Protein kintoun n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMS9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.070e-38
Identity = 70/142 (49.30%), Postives = 100/142 (70.42%), Query Frame = 1
Query:  250 IPGTGKTTDSGGVKTKTQGIMISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKL 675
            +PG GK     GV    +G+ I P+ GFVIK++      K+FIN+CQ E I K+ M K+L E+G+E EGL++P+S+GPP  D+DNAG  C+VYD+I+NP  +   + DKTGA R++LC+LAL  + +K++C +D KYKLPKL
Sbjct:   91 LPGGGKKLGESGVTEDDEGVRIVPKAGFVIKTRT-DKDEKIFINVCQSEAIQKTSMRKQLAEDGSEQEGLHVPLSLGPPREDRDNAGKSCIVYDIIVNPEVLVRSREDKTGASRNFLCELALGYIEQKYKCAVDYKYKLPKL 231          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A7S3HLE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLE1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.250e-38
Identity = 67/125 (53.60%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  301 QGIMISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKL 675
            +GI I+P  GF  K+  +  G+KVFIN+ QHE I    + KKLD++G EVEG+NIPMSVG P   +D  GA+CVVYD+I+NP  V E  ADKTG  RD++CQL +Q + +K++  LD +YKLPKL
Sbjct:   90 KGITITPSAGFSYKTSRVADGLKVFINMAQHELIDAPAIKKKLDDKGEEVEGMNIPMSVGQPRFSEDKKGAKCVVYDIIVNPIVVTEATADKTGKYRDFICQLGMQYLEQKYKEELDKRYKLPKL 214          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A7S3ZZ74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZ74_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.530e-31
Identity = 81/224 (36.16%), Postives = 119/224 (53.12%), Query Frame = 1
Query:   61 DAAKLATEQPEVFASLVGGG--GTGLDHDQGAL-TPARVEQLRAMEAAAELTGTKIKGHEGKGEINIPGTGKTTDSGGVKTKT--QGIMISPRPGFVIKS------------KVMGPGI--KVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKL 675
            + ++L    PE FA L+     G G D   G L   A+  +  A   A E      +  +   E+ +PG G+   +GG        GI I P PGFV+K+            +  G G   K F+N+C    +G  +  K+LD EGNEVEG+++P+S+GPP    DN G   +V D ++NP  + EC  D+TGA+RD++CQLAL  V +K++  LD KYKLP++
Sbjct:  100 ELSELKARDPEAFAELMQAALSGEGADDKVGELWEKAKQGKAPAPAGAPERVSRPARAGD---ELELPG-GRVLGAGGATRPATEDGIRIVPTPGFVLKTTGTQKAPEGGGIREAGAGAPQKYFVNVCSAAAVGAPKPTKRLDNEGNEVEGVSVPVSIGPPRGCADNKGTASIVVDCVVNPTVLAECVNDETGAQRDFICQLALTYVEQKYKLELDRKYKLPRM 319          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A482SP74_9ARCH (PIH1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP74_9ARCH)

HSP 1 Score: 128 bits (322), Expect = 2.800e-31
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  313 ISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKL 675
            I+P  GF  K+  +    KVFINI  HE IG+ +M KKLD EG EVEGLN+PMSVG    D D  G  C VYD++++ + + +C  D TG  R+++CQL +QS+ +K+  +LD +YK+PKL
Sbjct:    3 ITPTAGFSYKTYTIPEKSKVFINITHHEAIGEPQMAKKLDAEGQEVEGLNVPMSVGTGRADADKKGQSCTVYDIVVHHSVLNDCTKDPTGKYREFICQLGIQSIEQKYSIQLDKRYKIPKL 123          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A8J2T170_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T170_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.020e-31
Identity = 81/224 (36.16%), Postives = 119/224 (53.12%), Query Frame = 1
Query:   61 DAAKLATEQPEVFASLVGGG--GTGLDHDQGAL-TPARVEQLRAMEAAAELTGTKIKGHEGKGEINIPGTGKTTDSGGVKTKT--QGIMISPRPGFVIKS------------KVMGPGI--KVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKL 675
            + ++L    PE FA L+     G G D   G L   A+  +  A   A E      +  +   E+ +PG G+   +GG        GI I P PGFV+K+            +  G G   K F+N+C    +G  +  K+LD EGNEVEG+++P+S+GPP    DN G   +V D ++NP  + EC  D+TGA+RD++CQLAL  V +K++  LD KYKLP++
Sbjct:   71 ELSELQARDPEAFAELMQAALSGEGADDKVGELWEKAKQGKAPAPAGAPERVSRPARAGD---ELELPG-GRVLGAGGATRPATEDGIRIVPTPGFVLKTTGTQKAPEGGGIREAGAGAPQKYFVNVCSAAAVGAPKPTKRLDNEGNEVEGVSVPVSIGPPRGCADNKGTASIVVDCVVNPTVLAECVNDETGAQRDFICQLALTYVEQKYKLELDRKYKLPRM 290          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: A0A7S1U2U8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2U8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.810e-31
Identity = 78/246 (31.71%), Postives = 117/246 (47.56%), Query Frame = 1
Query:   10 MKETNPAEFEQYIQMAADAAKLATEQPEVFASLVGGGGTGLDHDQGALTPARVEQLRAMEAAAELTGTKIKGHEGKGEINIPGT-GKTTDSGGVKTKTQGIMISPRPGFVIKSKVMG-----------------------PGIKVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKL 675
            +   +P EFE +++   D AKL+   PE FA                    ++++      A +    K       G I +PG  G    S G + K QG  I P PGFV+K++ +G                        G KVF+NIC  E I     +K+LD  G EVEGL+IP+SVG      D+  ++C V DVI++    ++ K D +G ++D+L  L+LQ V  K++ RLD +YKLP++
Sbjct:   32 LSREHPEEFEAFMKATEDMAKLSQADPEAFAKFQ--------------ADPKLQEAYGATLAQQFQAAKDAATPSNGGIAMPGAPGSVLGSKGTEAKQQGKRIVPEPGFVVKTRSLGGAGDALAEEAAGGVGMVASSSDEEGRKVFVNICVSEAIAAPRTVKRLDANGQEVEGLSIPVSVGELRRAADHKASQCHVCDVIVSQKVYDDAKEDASGGQKDFLVGLSLQYVESKYKLRLDRRYKLPRM 263          
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Match: K3WAQ8_GLOUD (PIH1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAQ8_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 5.610e-30
Identity = 58/143 (40.56%), Postives = 94/143 (65.73%), Query Frame = 1
Query:  250 IPGTGKTTDSGGVKTKTQGIMISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEEGNEVEGLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLCQLALQSVMRKHECRLDNKYKLPKLT 678
             PG  K  ++ G+  K +G+ I   PGFV+K+  +  G KVF+N+C  + I      KKLD+EGNE EG+++P+S+G     KD  G   + +DV +N   VE+CK DKTG+ R+++C+LA++ + +K++ +LD +YKLP+L+
Sbjct:   85 FPGN-KVMEASGLAAKQEGVYIDVHPGFVMKTSELKSGKKVFVNVCYSDEIQTFSQQKKLDDEGNEQEGIHVPLSLGALHEVKDKKGTTSLAFDVAVNTQVVEDCKIDKTGSFRNFVCELAIEYIDQKYKVKLDARYKLPRLS 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21050.5503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNP4_ECTSI7.460e-9365.65PIH1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZG52_9STRA3.070e-4544.39Pre-RNA processing PIH1/Nop17-domain-containing pr... [more]
A0A7S2B8J4_9STRA3.070e-4039.83Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A2R5GMS9_9STRA1.070e-3849.30Protein kintoun n=1 Tax=Hondaea fermentalgiana Tax... [more]
A0A7S3HLE1_9STRA6.250e-3853.60Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3ZZ74_9STRA1.530e-3136.16Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A482SP74_9ARCH2.800e-3147.93PIH1 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A8J2T170_9STRA3.020e-3136.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U2U8_9STRA3.810e-3131.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K3WAQ8_GLOUD5.610e-3040.56PIH1 domain-containing protein n=1 Tax=Globisporan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21050contigH-paniculata_contig21050:793..3998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue4.5e-78
Seed eggNOG ortholog2880.D8LNP4
Preferred namePIH1D1
KEGG koko:K12302,ko:K19751
KEGG TC2.A.1.14
KEGG Pathwayko04721,ko04723,ko04724,ko05033,map04721,map04723,map04724,map05033
Hectar predicted targeting categoryother localisation
GOsGO:0000491,GO:0000492,GO:0000976,GO:0001013,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001188,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006364,GO:0006396,GO:0006403,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010951,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030162,GO:0030855,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032270,GO:0032502,GO:0032535,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033674,GO:0034470,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035065,GO:0035066,GO:0035067,GO:0042254,GO:0042325,GO:0042327,GO:0042393,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043281,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045859,GO:0045860,GO:0045861,GO:0045893,GO:0045935,GO:0045937,GO:0045943,GO:0046483,GO:0048254,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051336,GO:0051338,GO:0051346,GO:0051347,GO:0051569,GO:0051570,GO:0051573,GO:0051641,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0070761,GO:0070897,GO:0071168,GO:0071169,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0071900,GO:0071902,GO:0072594,GO:0080090,GO:0090066,GO:0090239,GO:0090240,GO:0090241,GO:0090304,GO:0097159,GO:0097255,GO:0097659,GO:1900109,GO:1900110,GO:1900112,GO:1900113,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901836,GO:1901838,GO:1901983,GO:1901984,GO:1901985,GO:1902275,GO:1902531,GO:1902533,GO:1902659,GO:1902661,GO:1902680,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1905268,GO:1905269,GO:1990837,GO:1990904,GO:2000112,GO:2000116,GO:2000117,GO:2000615,GO:2000617,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2000758,GO:2001141,GO:2001233,GO:2001234,GO:2001251,GO:2001252,GO:2001267,GO:2001268
EggNOG free text desc.axonemal dynein complex assembly
EggNOG OGsKOG4356@1,KOG4356@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04812
Exons5
Model size681
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21050.5503.1prot_H-paniculata_contig21050.5503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21050 796..3998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.615272-UTR-H-paniculata_contig21050:792..7951622929557.615272-UTR-H-paniculata_contig21050:792..795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21050 793..795 +
1691480912.8210504-UTR-H-paniculata_contig21050:792..7951691480912.8210504-UTR-H-paniculata_contig21050:792..795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21050 793..795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.630907-CDS-H-paniculata_contig21050:795..9371622929557.630907-CDS-H-paniculata_contig21050:795..937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 796..937 +
1691480912.8318634-CDS-H-paniculata_contig21050:795..9371691480912.8318634-CDS-H-paniculata_contig21050:795..937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 796..937 +
1622929557.644116-CDS-H-paniculata_contig21050:1614..17811622929557.644116-CDS-H-paniculata_contig21050:1614..1781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 1615..1781 +
1691480912.8409085-CDS-H-paniculata_contig21050:1614..17811691480912.8409085-CDS-H-paniculata_contig21050:1614..1781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 1615..1781 +
1622929557.6595254-CDS-H-paniculata_contig21050:3146..32811622929557.6595254-CDS-H-paniculata_contig21050:3146..3281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 3147..3281 +
1691480912.8500772-CDS-H-paniculata_contig21050:3146..32811691480912.8500772-CDS-H-paniculata_contig21050:3146..3281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 3147..3281 +
1622929557.674356-CDS-H-paniculata_contig21050:3457..35591622929557.674356-CDS-H-paniculata_contig21050:3457..3559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 3458..3559 +
1691480912.862647-CDS-H-paniculata_contig21050:3457..35591691480912.862647-CDS-H-paniculata_contig21050:3457..3559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 3458..3559 +
1622929557.6880195-CDS-H-paniculata_contig21050:3866..39981622929557.6880195-CDS-H-paniculata_contig21050:3866..3998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 3867..3998 +
1691480912.872358-CDS-H-paniculata_contig21050:3866..39981691480912.872358-CDS-H-paniculata_contig21050:3866..3998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21050 3867..3998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21050.5503.1

>prot_H-paniculata_contig21050.5503.1 ID=prot_H-paniculata_contig21050.5503.1|Name=mRNA_H-paniculata_contig21050.5503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MLMKETNPAEFEQYIQMAADAAKLATEQPEVFASLVGGGGTGLDHDQGAL
TPARVEQLRAMEAAAELTGTKIKGHEGKGEINIPGTGKTTDSGGVKTKTQ
GIMISPRPGFVIKSKVMGPGIKVFINICQHERIGKSEMIKKLDEEGNEVE
GLNIPMSVGPPSVDKDNAGAECVVYDVIINPNAVEECKADKTGARRDWLC
QLALQSVMRKHECRLDNKYKLPKLT*
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mRNA from alignment at H-paniculata_contig21050:793..3998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21050.5503.1 ID=mRNA_H-paniculata_contig21050.5503.1|Name=mRNA_H-paniculata_contig21050.5503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3206bp|location=Sequence derived from alignment at H-paniculata_contig21050:793..3998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATGCTCATGAAAGAGACGAATCCAGCAGAGTTCGAGCAGTACATACA AATGGCCGCCGATGCAGCCAAGCTAGCCACAGAGCAACCGGAGGTGTTCG CTTCCCTTGTGGGAGGCGGCGGTACCGGATTGGATCATGACCAGGGTATC CTGGGGGACAAAGGTGGGGAGGAGAGATTTCCGTAAGCTTTCGGTTTTAT ATGTCAAAAAGAAGATGAACACCATCCAGTTATCGTTTGATGTAGGCCAC CCGGAAGCACCATGTCGCATTTAGTATTTTATTCCCAAGACTTGGAGAAA AGAACACTTGCAACAAGAGCAATATGCTTCTCCAAAAGGCTTCGAGAACA GCAAGAACGACGGTAAGAGTCAATCCACCTGGCAACACAGTGAAGAGAAC CCAAAGAACACGTGTTTGGGCCTTTTCGTCATAGTTGACGAGAAGCAAGA AATGTACTACACAATCGCTCCAAGTATTGTCGCTGTCAAACCGGCTGACC AAGAGATGTAACTGGTGCGCTTTAAGCCGCGTGGTTTCGCAAACCTTTTA CGAAACAGCGGTCACCGTCCCCTCCCACCCGTCCGCTTGGACTGAATCAA TGATGACAACAATACTCGGCACTGGCATACCGTATTCGTTTTGATACGTA CATACATATATATATATTGCATTGTATAGACTTCTTTTCTCGGCAAAAAT TCGGTTGTACGTGTGTTCGGTACAATTACCTGTTCACCTATCCATGTGTA TCTACACCCGGCGCACGCCTAGATATGCTCCGACCCGTCTGTCACTCATG TCTATTGTCGACCCAGGAAAAGGGGCGTTGACGCCTGCTCGTGTGGAGCA ATTGCGAGCGATGGAGGCAGCTGCTGAGTTGACCGGGACGAAGATCAAGG GACACGAGGGAAAAGGAGAGATAAATATTCCGGGAACGGGCAAAACTACG GATTCGGGAGGCGTGAAGACGAAGACACAAGGAATCATGGTCAGTTGTGA GGGATGACACTGGAGGCGCGTGTGGCCTCTGGGAGACAAAGTAAATGGAT ATCATTCGCTTAGCGTTTGATGAGAGACATATTTTATTGATGAGTAAAAA ACGAGTAGTTATTGTCAATATTTAGCCGTTGTTACAGTTTTTACCGTTTT GCCTTTTTTGGCTCTTGCTTGCTGAGGCTTGCTCATTTCTTAATGTGTAT TCGGTTCACCCCCTAGAAGAATCTGAATACTTGGAAAGGTTGAAGATTTG GACAAGCCTTCTTTTTTTTTTTTCAAGTATTCGTCAATTATTCGTTAAGT ATTCATCTGGCTTCCAGTATGTGTAGGCAAATGGATAGATGAAGTGTCGA CTCCTGTTTGTTTCATTCATTTTATTGCTACTCGGAGTAGACAATGACTG AAAAAATATCCCAATAGTCTTGTATATTAAACAGATTATTTTTATTGTTT ATTTATGCGAAACAGATTGACCTTTTTCTTGCTCAGTTTTTTTCTTTCAC GTATGCGATTGCATATTTGACAGTCTTTACCTTTTGCCTCCGGGGTAAAG CTGTTCGAAGATTTTTTTTTTTTAATATTCAAGTTTTGAAGGTACCAAAT GTTCACGAAAAAGTTGTTGTATACGTAAGGCAATTTTCGGCAATTTCCAA ATAAATCGAAAGTCCGTTTCTTCCAATGTAGACAAAAGTTACTTGTTTTG AAAAAGGAGCTGGCGAACTCTGTGCTTTCTTTGGAGTTTATCTTAAACGT TGTGTTCGAGCTATAACGCAAATGGCCCAGGGCACATGGAAAAAACGTAT ACGTGCTCATTCTTGCTGAACCTTTAGGCGAATATCTTTGATTAATTTTT CGTCTGAATCAATGAAAGTATTTATCTTTGTCATTCTCCAGTACTCTACC GCATGTTTCTGCTCAAGGTAGCGGTAACTACGGTGCGGAATGGTGATGGC TATTTTTTCATCACCAAAGCCAACTCAATGTCGTCGCAGGCGAGGCAGCT ACCCTGTCACGACCAACATTGGTTGATGCGGGCAGAATAACAGGGCAAAT TACGGACGGCCTGTATGGAAGGAGCAACATCATTTTTTGCTTTTTGGTCA AGTCTTGGTGCTTGTTTTTTTCTGCTGGAAACTTGTTACGCATATTATCT TATTGTCATACGCTATTTTCTATTTCGTGTTTGGAAGCTGTTCGTTGTTG TTGCATCTACGGTGACAATGTCGCATCTACGGTGACGTGCACCATACTGC ACATGTTGTCGTTGTCGCTGTTGTTGGTGGTGCTACAATGTATTGTTGGT GTATACCACCGTTGCGCCCTGTCTTTTTCCGTGTTTGGCCATTCAACCAA TTAGATCTCTCCCCGACCCGGGTTCGTGATCAAGTCCAAAGTAATGGGGC CAGGAATCAAGGTTTTTATCAATATCTGTCAGCACGAACGCATCGGGAAG TCCGAGATGATCAAGAAGCTTGACGAGGAAGGAAACGAGGTATGGATGCA TGCTAGTGTGATGCTGACACACTGTCTTTACTGCAGCGCGTCCTACGAGT CTTTGCAGCGTAGTACCGCAGTGCAACGCTCTCACAACATTTTTTGGAGT TTTGTGAAGCTACTTGCTGGTGTGACTTTGACCTGTATACGGCATGCTCA CTATGTGTCATGCAGGTCGAGGGGCTGAATATTCCCATGAGCGTCGGACC TCCCAGCGTGGACAAAGACAATGCTGGAGCCGAGTGCGTGGTGTACGACG TGATCATCAATCCCAATGTCAGTACAAAAAAAGTACCAAGTGATGACCCA GGCGGTACGGTATAGTGTGTCGTTGTAGTGTATGGTGCTCGGAGGCGGCG ATCTCGGTAGCGTGCTGCAGTAACTGAGGCGGCGTCGTATACTTTACTGC ACTGGCATATGTCGTCGTGTAGTGCTATATAACAGTTGGACATGTCGGCA GAGGTATTTTCGAGCAGTGGGATCTATGGAAAATGTGGTGCCTGGCTCTG TTTTCTGTCCTGCTTGTTGCCCGGTGCTTGATGGGTTCTTTGTTTTTCGT TCTGTGTTGCTATCGGTAGACCAGGCAGTGGAAGAATGCAAGGCGGACAA AACGGGTGCGAGGCGAGATTGGCTATGTCAGTTGGCCTTGCAGTCGGTCA TGAGGAAGCACGAGTGCCGACTGGATAACAAATACAAGCTGCCCAAGCTA ACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21050:793..3998+

>mRNA_H-paniculata_contig21050.5503.1 ID=mRNA_H-paniculata_contig21050.5503.1|Name=mRNA_H-paniculata_contig21050.5503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig21050:793..3998+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCATGAAAGAGACGAATCCAGCAGAGTTCGAGCAGTACATACAAAT
GGCCGCCGATGCAGCCAAGCTAGCCACAGAGCAACCGGAGGTGTTCGCTT
CCCTTGTGGGAGGCGGCGGTACCGGATTGGATCATGACCAGGATGCTCAT
GAAAGAGACGAATCCAGCAGAGTTCGAGCAGTACATACAAATGGCCGCCG
ATGCAGCCAAGCTAGCCACAGAGCAACCGGAGGTGTTCGCTTCCCTTGTG
GGAGGCGGCGGTACCGGATTGGATCATGACCAGGGGGCGTTGACGCCTGC
TCGTGTGGAGCAATTGCGAGCGATGGAGGCAGCTGCTGAGTTGACCGGGA
CGAAGATCAAGGGACACGAGGGAAAAGGAGAGATAAATATTCCGGGAACG
GGCAAAACTACGGATTCGGGAGGCGTGAAGACGAAGACACAAGGAATCAT
GGGGCGTTGACGCCTGCTCGTGTGGAGCAATTGCGAGCGATGGAGGCAGC
TGCTGAGTTGACCGGGACGAAGATCAAGGGACACGAGGGAAAAGGAGAGA
TAAATATTCCGGGAACGGGCAAAACTACGGATTCGGGAGGCGTGAAGACG
AAGACACAAGGAATCATGATCTCTCCCCGACCCGGGTTCGTGATCAAGTC
CAAAGTAATGGGGCCAGGAATCAAGGTTTTTATCAATATCTGTCAGCACG
AACGCATCGGGAAGTCCGAGATGATCAAGAAGCTTGACGAGGAAGGAAAC
GAGATCTCTCCCCGACCCGGGTTCGTGATCAAGTCCAAAGTAATGGGGCC
AGGAATCAAGGTTTTTATCAATATCTGTCAGCACGAACGCATCGGGAAGT
CCGAGATGATCAAGAAGCTTGACGAGGAAGGAAACGAGGTCGAGGGGCTG
AATATTCCCATGAGCGTCGGACCTCCCAGCGTGGACAAAGACAATGCTGG
AGCCGAGTGCGTGGTGTACGACGTGATCATCAATCCCAATGTCGAGGGGC
TGAATATTCCCATGAGCGTCGGACCTCCCAGCGTGGACAAAGACAATGCT
GGAGCCGAGTGCGTGGTGTACGACGTGATCATCAATCCCAATGCAGTGGA
AGAATGCAAGGCGGACAAAACGGGTGCGAGGCGAGATTGGCTATGTCAGT
TGGCCTTGCAGTCGGTCATGAGGAAGCACGAGTGCCGACTGGATAACAAA
TACAAGCTGCCCAAGCTAACGTGAGCAGTGGAAGAATGCAAGGCGGACAA
AACGGGTGCGAGGCGAGATTGGCTATGTCAGTTGGCCTTGCAGTCGGTCA
TGAGGAAGCACGAGTGCCGACTGGATAACAAATACAAGCTGCCCAAGCTA
ACGTGA
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