mRNA_H-paniculata_contig10862.550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE) HSP 1 Score: 167 bits (424), Expect = 7.350e-46 Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 1 Query: 4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 + VKFYISGANVPGEGELKCIDW+K + +ES + +GGDADL+LQG+ALS VKN F+ +Q R+SS+WEVVRSLE +FPGQS +R DL +L++LNGNDYLPKVRG+SF CF+AY +K Sbjct: 154 YQGVKFYISGANVPGEGELKCIDWLKHMPKP--DESAVIVGGDADLILQGLALSEVKNTFICSQTDAGSYRLSSIWEVVRSLEAMFPGQSALVRIDLAVLIMLNGNDYLPKVRGVSFSRCFQAYQALK 279
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: L1JQ07_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ07_GUITC) HSP 1 Score: 153 bits (386), Expect = 5.260e-44 Identity = 80/142 (56.34%), Postives = 102/142 (71.83%), Query Frame = 1 Query: 1 RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYN--------QASKRKGRVS-----SLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 +F V FYISGA+V GEGE+K I+W+ Q +E I +GGDADLVLQG+A+ RVK+LFVY + K KG+ S S+WEVVRSLE+LFPGQS+ +RADL++LM++NGNDYLPKVRG SF + FRAY +K Sbjct: 102 KFKNVAFYISGADVAGEGEIKIIEWIHNLLQNQNDEKIIIVGGDADLVLQGLAVLRVKDLFVYAGKDMSQHPSSRKAKGKSSPSIVLSMWEVVRSLERLFPGQSQAVRADLIVLMIMNGNDYLPKVRGGSFESFFRAYKKVK 243
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A836C8H5_9STRA (DRBM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H5_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.750e-34 Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1 Query: 97 GTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 G EES + +GGDADLVLQG+ALS+VKNLFVY KR GR+ SLW+V R LE +FPG+S +R DL+ L+VLNGNDYLPKVRG+SFG CFR Y K Sbjct: 376 GGEESVVIVGGDADLVLQGLALSKVKNLFVYASELKRSGRIVSLWQVTRQLEAMFPGESGGIRNDLIFLLVLNGNDYLPKVRGVSFGRCFRHYCAAK 472
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A2V3J5K0_9FLOR (5'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K0_9FLOR) HSP 1 Score: 128 bits (321), Expect = 7.520e-32 Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = 1 Query: 1 RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVY-----NQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 ++ V+ ISGA+VPGEGELK ID+ + T+Q + +S + +GGDAD+VLQG+A V+N FVY +R+ V S+WE+ R E+LFP +S +R D +LL +LNGNDY+PKVRGIS + YL++K Sbjct: 157 KYRNVEIRISGADVPGEGELKLIDFCR-TAQIPSTDSVVVVGGDADIVLQGLATVPVRNFFVYLRNFAGSRGRRQSYVISVWELTRIFERLFPNESSSVRLDFVLLAILNGNDYIPKVRGISLSRTWHRYLNLK 289
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7S1TFG2_9RHOD (Hypothetical protein n=4 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFG2_9RHOD) HSP 1 Score: 125 bits (315), Expect = 4.510e-31 Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = 1 Query: 1 RFSKVKFYISGANVPGEGELKCIDWVK---LTSQAGTE------ESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 ++ KV ISG +VPGEGE+K DW+ +AGT+ ES I IGGDAD+VLQG+A + ++LFVY Q+ + +G V S+ +V++LE FPG+S+ +R D ++L ++NGNDYLPKVRG+ F + + Y+ IK Sbjct: 135 KYDKVDMRISGPDVPGEGEVKIFDWLNSFVARREAGTQVSSIVTESVIVIGGDADIVLQGLATTSFRDLFVYAQSRRDEGTVISISLLVKALEDNFPGESDRVRLDFIVLCLMNGNDYLPKVRGVGFDSLWNGYIAIK 272
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: M1US37_CYAM1 (XRN_N domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1US37_CYAM1) HSP 1 Score: 107 bits (268), Expect = 1.150e-24 Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVY--------------NQASKRKGR---VSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 + V+F +SG VPGEGE+K ID++ + S + IG DADLV+ G+A +V+N FV+ A KR+ V S+W+ +R L++ FPG++ LR DL++++++ GNDYLPK+RG SF + + AY +K Sbjct: 148 YQNVRFVVSGPTVPGEGEIKIIDYIH--RYVDPQHSVVVIGSDADLVVLGLATQKVRNFFVFVITPRANMQDAPEHGTAQKRQAISAIVISVWQWIRVLDRFFPGETPSLRLDLVVMLMMQGNDYLPKLRGTSFNSIWEAYKALK 290
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: I2CR78_NANGC (5'-3' exoribonuclease 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR78_NANGC) HSP 1 Score: 104 bits (259), Expect = 1.230e-23 Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1 Query: 10 KVKFYISGANVPGEGELKCIDWVK---LTSQAGT--------------------EESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 ++++Y+S + PGEGE+K +DW+ LT + G ES + +GGDADLVLQG+AL + + V+ KR G SL + V LE FPGQS +R D++LL+V+ GNDYL KVRG++F + AY ++K Sbjct: 203 RIRYYVSCSESPGEGEVKLMDWINTYLLTHEDGRXXXXXXXXXXXXXKKAGRKDSESIVVVGGDADLVLQGLALPGLPDFNVFIPDVKRSGYFVSLRQFVARLETDFPGQSHQVRTDMVLLLVMAGNDYLKKVRGLTFRSKLLAYNNVK 351
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7J7IHE6_9RHOD (XRN_N domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHE6_9RHOD) HSP 1 Score: 103 bits (256), Expect = 4.810e-23 Identity = 53/145 (36.55%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSS-----------------LWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 + ++F +SG VPGEGE+K ID++ + S I IG DADLVL G+A ++++ FV+ ++ +V+S +W+ +R L++LFPG++ +R DL LL+++ GNDY+PK+RG SF + + AY +K Sbjct: 148 YRNLRFVVSGPTVPGEGEIKIIDYIHRCVEP--HHSVIVIGSDADLVLLGLATQKIRDFFVFVITPRQSAQVASRGPAETHRNSVNATTISVWQWIRVLDRLFPGETAPVRLDLALLLMMQGNDYVPKLRGSSFKSIWAAYKALK 290
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7S0HWC8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HWC8_9CRYP) HSP 1 Score: 99.4 bits (246), Expect = 1.160e-22 Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1 Query: 1 RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVY--NQASKRKGR------VSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFR 369 +F V FYIS ++V GEGELK ++W+ + ++++ +FIGGD+DL +Q +AL + +++++ N KG+ SL ++ LE FP QS+ +RADLMLL++ NGNDYLPK++ + F+ Sbjct: 166 KFQDVSFYISCSDVAGEGELKLMEWIHTFVEKKSQDTILFIGGDSDLTIQSLALRDLPHVYLFDTNLEHANKGKQVAASHFFSLAQLKSELEMQFPHQSDLVRADLMLLIIFNGNDYLPKLKCFNLPCSFQ 296
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7S4KKW8_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KKW8_GUITH) HSP 1 Score: 94.4 bits (233), Expect = 3.210e-20 Identity = 45/134 (33.58%), Postives = 79/134 (58.96%), Query Frame = 1 Query: 4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASK------RKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387 + + FY+S ++V GEGELK ++W+ ++ +++ +FIGGD+DL +Q +AL +++ N+ + SL E+ + LE +FP S+ +R DL+LL++ NGNDYLP ++ + F Y +K Sbjct: 155 YRDISFYLSCSDVAGEGELKLVEWIHTFVESASKDRILFIGGDSDLTIQSLALRGHSQVYLLNRKDGVGLQRIKPMHFISLSELKKELETIFPDHSDIIRFDLLLLIIFNGNDYLPPLKHFNLQVSFEVYTLMK 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10862.550.1 >prot_H-paniculata_contig10862.550.1 ID=prot_H-paniculata_contig10862.550.1|Name=mRNA_H-paniculata_contig10862.550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQback to top mRNA from alignment at H-paniculata_contig10862:4256..5176+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10862.550.1 ID=mRNA_H-paniculata_contig10862.550.1|Name=mRNA_H-paniculata_contig10862.550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig10862:4256..5176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10862:4256..5176+ >mRNA_H-paniculata_contig10862.550.1 ID=mRNA_H-paniculata_contig10862.550.1|Name=mRNA_H-paniculata_contig10862.550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig10862:4256..5176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |