mRNA_H-paniculata_contig10862.550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10862.550.1
Unique NamemRNA_H-paniculata_contig10862.550.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.350e-46
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 1
Query:    4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            +  VKFYISGANVPGEGELKCIDW+K   +   +ES + +GGDADL+LQG+ALS VKN F+ +Q      R+SS+WEVVRSLE +FPGQS  +R DL +L++LNGNDYLPKVRG+SF  CF+AY  +K
Sbjct:  154 YQGVKFYISGANVPGEGELKCIDWLKHMPKP--DESAVIVGGDADLILQGLALSEVKNTFICSQTDAGSYRLSSIWEVVRSLEAMFPGQSALVRIDLAVLIMLNGNDYLPKVRGVSFSRCFQAYQALK 279          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: L1JQ07_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQ07_GUITC)

HSP 1 Score: 153 bits (386), Expect = 5.260e-44
Identity = 80/142 (56.34%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    1 RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYN--------QASKRKGRVS-----SLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            +F  V FYISGA+V GEGE+K I+W+    Q   +E  I +GGDADLVLQG+A+ RVK+LFVY          + K KG+ S     S+WEVVRSLE+LFPGQS+ +RADL++LM++NGNDYLPKVRG SF + FRAY  +K
Sbjct:  102 KFKNVAFYISGADVAGEGEIKIIEWIHNLLQNQNDEKIIIVGGDADLVLQGLAVLRVKDLFVYAGKDMSQHPSSRKAKGKSSPSIVLSMWEVVRSLERLFPGQSQAVRADLIVLMIMNGNDYLPKVRGGSFESFFRAYKKVK 243          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A836C8H5_9STRA (DRBM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.750e-34
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   97 GTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            G EES + +GGDADLVLQG+ALS+VKNLFVY    KR GR+ SLW+V R LE +FPG+S  +R DL+ L+VLNGNDYLPKVRG+SFG CFR Y   K
Sbjct:  376 GGEESVVIVGGDADLVLQGLALSKVKNLFVYASELKRSGRIVSLWQVTRQLEAMFPGESGGIRNDLIFLLVLNGNDYLPKVRGVSFGRCFRHYCAAK 472          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A2V3J5K0_9FLOR (5'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K0_9FLOR)

HSP 1 Score: 128 bits (321), Expect = 7.520e-32
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVY-----NQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            ++  V+  ISGA+VPGEGELK ID+ + T+Q  + +S + +GGDAD+VLQG+A   V+N FVY         +R+  V S+WE+ R  E+LFP +S  +R D +LL +LNGNDY+PKVRGIS    +  YL++K
Sbjct:  157 KYRNVEIRISGADVPGEGELKLIDFCR-TAQIPSTDSVVVVGGDADIVLQGLATVPVRNFFVYLRNFAGSRGRRQSYVISVWELTRIFERLFPNESSSVRLDFVLLAILNGNDYIPKVRGISLSRTWHRYLNLK 289          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7S1TFG2_9RHOD (Hypothetical protein n=4 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFG2_9RHOD)

HSP 1 Score: 125 bits (315), Expect = 4.510e-31
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    1 RFSKVKFYISGANVPGEGELKCIDWVK---LTSQAGTE------ESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            ++ KV   ISG +VPGEGE+K  DW+       +AGT+      ES I IGGDAD+VLQG+A +  ++LFVY Q+ + +G V S+  +V++LE  FPG+S+ +R D ++L ++NGNDYLPKVRG+ F + +  Y+ IK
Sbjct:  135 KYDKVDMRISGPDVPGEGEVKIFDWLNSFVARREAGTQVSSIVTESVIVIGGDADIVLQGLATTSFRDLFVYAQSRRDEGTVISISLLVKALEDNFPGESDRVRLDFIVLCLMNGNDYLPKVRGVGFDSLWNGYIAIK 272          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: M1US37_CYAM1 (XRN_N domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1US37_CYAM1)

HSP 1 Score: 107 bits (268), Expect = 1.150e-24
Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVY--------------NQASKRKGR---VSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            +  V+F +SG  VPGEGE+K ID++        + S + IG DADLV+ G+A  +V+N FV+                A KR+     V S+W+ +R L++ FPG++  LR DL++++++ GNDYLPK+RG SF + + AY  +K
Sbjct:  148 YQNVRFVVSGPTVPGEGEIKIIDYIH--RYVDPQHSVVVIGSDADLVVLGLATQKVRNFFVFVITPRANMQDAPEHGTAQKRQAISAIVISVWQWIRVLDRFFPGETPSLRLDLVVMLMMQGNDYLPKLRGTSFNSIWEAYKALK 290          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: I2CR78_NANGC (5'-3' exoribonuclease 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR78_NANGC)

HSP 1 Score: 104 bits (259), Expect = 1.230e-23
Identity = 59/149 (39.60%), Postives = 86/149 (57.72%), Query Frame = 1
Query:   10 KVKFYISGANVPGEGELKCIDWVK---LTSQAGT--------------------EESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            ++++Y+S +  PGEGE+K +DW+    LT + G                      ES + +GGDADLVLQG+AL  + +  V+    KR G   SL + V  LE  FPGQS  +R D++LL+V+ GNDYL KVRG++F +   AY ++K
Sbjct:  203 RIRYYVSCSESPGEGEVKLMDWINTYLLTHEDGRXXXXXXXXXXXXXKKAGRKDSESIVVVGGDADLVLQGLALPGLPDFNVFIPDVKRSGYFVSLRQFVARLETDFPGQSHQVRTDMVLLLVMAGNDYLKKVRGLTFRSKLLAYNNVK 351          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7J7IHE6_9RHOD (XRN_N domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHE6_9RHOD)

HSP 1 Score: 103 bits (256), Expect = 4.810e-23
Identity = 53/145 (36.55%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASKRKGRVSS-----------------LWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            +  ++F +SG  VPGEGE+K ID++    +     S I IG DADLVL G+A  ++++ FV+    ++  +V+S                 +W+ +R L++LFPG++  +R DL LL+++ GNDY+PK+RG SF + + AY  +K
Sbjct:  148 YRNLRFVVSGPTVPGEGEIKIIDYIHRCVEP--HHSVIVIGSDADLVLLGLATQKIRDFFVFVITPRQSAQVASRGPAETHRNSVNATTISVWQWIRVLDRLFPGETAPVRLDLALLLMMQGNDYVPKLRGSSFKSIWAAYKALK 290          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7S0HWC8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HWC8_9CRYP)

HSP 1 Score: 99.4 bits (246), Expect = 1.160e-22
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVY--NQASKRKGR------VSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFR 369
            +F  V FYIS ++V GEGELK ++W+    +  ++++ +FIGGD+DL +Q +AL  + +++++  N     KG+        SL ++   LE  FP QS+ +RADLMLL++ NGNDYLPK++  +    F+
Sbjct:  166 KFQDVSFYISCSDVAGEGELKLMEWIHTFVEKKSQDTILFIGGDSDLTIQSLALRDLPHVYLFDTNLEHANKGKQVAASHFFSLAQLKSELEMQFPHQSDLVRADLMLLIIFNGNDYLPKLKCFNLPCSFQ 296          
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Match: A0A7S4KKW8_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KKW8_GUITH)

HSP 1 Score: 94.4 bits (233), Expect = 3.210e-20
Identity = 45/134 (33.58%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    4 FSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQGMALSRVKNLFVYNQASK------RKGRVSSLWEVVRSLEKLFPGQSEYLRADLMLLMVLNGNDYLPKVRGISFGACFRAYLDIK 387
            +  + FY+S ++V GEGELK ++W+    ++ +++  +FIGGD+DL +Q +AL     +++ N+         +     SL E+ + LE +FP  S+ +R DL+LL++ NGNDYLP ++  +    F  Y  +K
Sbjct:  155 YRDISFYLSCSDVAGEGELKLVEWIHTFVESASKDRILFIGGDSDLTIQSLALRGHSQVYLLNRKDGVGLQRIKPMHFISLSELKKELETIFPDHSDIIRFDLLLLIIFNGNDYLPPLKHFNLQVSFEVYTLMK 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10862.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZW9_9PHAE7.350e-4662.50XRN_N domain-containing protein n=2 Tax=Ectocarpus... [more]
L1JQ07_GUITC5.260e-4456.34Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A836C8H5_9STRA1.750e-3465.98DRBM domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2V3J5K0_9FLOR7.520e-3247.765'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis cho... [more]
A0A7S1TFG2_9RHOD4.510e-3146.38Hypothetical protein n=4 Tax=Compsopogon caeruleus... [more]
M1US37_CYAM11.150e-2438.62XRN_N domain-containing protein n=1 Tax=Cyanidiosc... [more]
I2CR78_NANGC1.230e-2339.605'-3' exoribonuclease 1 (Fragment) n=1 Tax=Nannoch... [more]
A0A7J7IHE6_9RHOD4.810e-2336.55XRN_N domain-containing protein n=1 Tax=Cyanidioco... [more]
A0A7S0HWC8_9CRYP1.160e-2238.93Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4KKW8_GUITH3.210e-2033.58Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10862contigH-paniculata_contig10862:4256..5176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue4.7e-40
Seed eggNOG ortholog2880.D7G8V1
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928790.2800403-CDS-H-paniculata_contig10862:4255..44231622928790.2800403-CDS-H-paniculata_contig10862:4255..4423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10862 4256..4423 +
1691480620.8653893-CDS-H-paniculata_contig10862:4255..44231691480620.8653893-CDS-H-paniculata_contig10862:4255..4423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10862 4256..4423 +
1622928790.2961314-CDS-H-paniculata_contig10862:4957..51761622928790.2961314-CDS-H-paniculata_contig10862:4957..5176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10862 4958..5176 +
1691480620.874859-CDS-H-paniculata_contig10862:4957..51761691480620.874859-CDS-H-paniculata_contig10862:4957..5176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10862 4958..5176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10862.550.1prot_H-paniculata_contig10862.550.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10862 4256..5176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10862.550.1

>prot_H-paniculata_contig10862.550.1 ID=prot_H-paniculata_contig10862.550.1|Name=mRNA_H-paniculata_contig10862.550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
RFSKVKFYISGANVPGEGELKCIDWVKLTSQAGTEESTIFIGGDADLVLQ
GMALSRVKNLFVYNQASKRKGRVSSLWEVVRSLEKLFPGQSEYLRADLML
LMVLNGNDYLPKVRGISFGACFRAYLDIK
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mRNA from alignment at H-paniculata_contig10862:4256..5176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10862.550.1 ID=mRNA_H-paniculata_contig10862.550.1|Name=mRNA_H-paniculata_contig10862.550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig10862:4256..5176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTTCGAAAGTAAAGTTCTATATTTCTGGAGCAAATGTACCGGGCGA AGGAGAGCTGAAGTGCATCGACTGGGTTAAGCTCACTTCCCAGGCCGGGA CAGAGGAGAGCACCATATTTATAGGGGGAGATGCCGATCTTGTACTGCAG GGTATGGCGCTCAGCCGGGTAGGTGCAGTCTCGTACAGTACAGGAGTACA GGAGTACAGGAGTACAGGAGCACAATACAACAGAGTACATTAAATTACGT TCGTATATCTTGCAGCAGTGCTGGTGATTAGTTTGCGGTGAAAGCCCGCT GTAACGTGTTGCCGATAGAGCTCCACTGCGGCGTTCATCGCCAGGTGCGG GCTTTGCTCGTTTCGTTTGTATCTTATGCTGCCGAGGATGACACGAGAGG TTGATATCATAATAGCTGAGGTAAATGGTTGAAGTTGAAATATATCTGGG CTCATCTCATCAGTGTGCGATTTTGCGACTCATTCCATCTGCTGCCTTAT TATTTTTCTTCTTTTCGTGTAGTCAGTCATGCGCGTTTTTACTCGTGTAT TCTCTCATGTATTCTCTCATGTATTCTCTCATGTATTCTCTCATGTATTT ACCCCAAGTCGGTACCGTGTTGTTGTACCCTACAGGTCGATGCGTGATTC ATCGTCCGTCTGTTGTTTTTATGTACGTGTGTTGGTTTTTATGTACATGT AGGTGAAGAACTTGTTCGTATACAACCAAGCGTCCAAACGCAAGGGGCGA GTGTCGTCGCTATGGGAGGTTGTGCGTTCCCTGGAGAAGCTATTTCCAGG CCAATCGGAGTATTTGCGAGCAGACCTGATGCTTCTTATGGTGCTCAATG GCAACGATTACCTTCCCAAAGTCAGGGGCATCAGCTTTGGCGCGTGCTTT CGCGCTTACCTGGACATCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10862:4256..5176+

>mRNA_H-paniculata_contig10862.550.1 ID=mRNA_H-paniculata_contig10862.550.1|Name=mRNA_H-paniculata_contig10862.550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig10862:4256..5176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTTCGAAAGTAAAGTTCTATATTTCTGGAGCAAATGTACCGGGCGA
AGGAGAGCTGAAGTGCATCGACTGGGTTAAGCTCACTTCCCAGGCCGGGA
CAGAGGAGAGCACCATATTTATAGGGGGAGATGCCGATCTTGTACTGCAG
GGTATGGCGCTCAGCCGGAGGTTTTCGAAAGTAAAGTTCTATATTTCTGG
AGCAAATGTACCGGGCGAAGGAGAGCTGAAGTGCATCGACTGGGTTAAGC
TCACTTCCCAGGCCGGGACAGAGGAGAGCACCATATTTATAGGGGGAGAT
GCCGATCTTGTACTGCAGGGTATGGCGCTCAGCCGGGTGAAGAACTTGTT
CGTATACAACCAAGCGTCCAAACGCAAGGGGCGAGTGTCGTCGCTATGGG
AGGTTGTGCGTTCCCTGGAGAAGCTATTTCCAGGCCAATCGGAGTATTTG
CGAGCAGACCTGATGCTTCTTATGGTGCTCAATGGCAACGATTACCTTCC
CAAAGTCAGGGGCATCAGCTTTGGCGCGTGCTTTCGCGCTTACCTGGACA
TCAAGGTGAAGAACTTGTTCGTATACAACCAAGCGTCCAAACGCAAGGGG
CGAGTGTCGTCGCTATGGGAGGTTGTGCGTTCCCTGGAGAAGCTATTTCC
AGGCCAATCGGAGTATTTGCGAGCAGACCTGATGCTTCTTATGGTGCTCA
ATGGCAACGATTACCTTCCCAAAGTCAGGGGCATCAGCTTTGGCGCGTGC
TTTCGCGCTTACCTGGACATCAAG
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