mRNA_H-paniculata_contig21028.5491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21028.5491.1
Unique NamemRNA_H-paniculata_contig21028.5491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.600e-18
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    7 DMVDNYLHAFCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRLLVFDETRYVYRN 204
            +MV++  HAFCFL RA RL MA STFSWW AFLG  TE+HFP   +   +T   +  DE RYVYR+
Sbjct:  138 EMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEGRYVYRD 203          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.330e-17
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    7 DMVDNYLHAFCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRLLVFDETRYVYRN 204
            +MV++  HAFCFL RA RL MA STFSWW AFLG  TE+HFP   +   +T   +  DE RYVYR+
Sbjct:  305 EMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEGRYVYRD 370          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: A0A349D2R7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peribacteria bacterium TaxID=2053688 RepID=A0A349D2R7_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.330e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   25 LHAFCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRL---LVFDETRYVY 198
            L  FCFL+ A ++A++ ST+SWWAA+L  ATEI+FP    G   +SR    L  DE RY Y
Sbjct:  178 LEDFCFLKSAKKIALSQSTYSWWAAYLSDATEIYFPRSLTGPFSSSRPDIDLEVDEPRYRY 238          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: F2TVY1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVY1_SALR5)

HSP 1 Score: 57.4 bits (137), Expect = 5.690e-8
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   25 LHAFCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGG----KGSHLTSRLLVFDETRYVYRN 204
            +H + F++ A RL M+ ST++WWAA+LG A E+H+P  G    KG   T  L   DE RYV+ +
Sbjct:  447 MHDWLFMRSARRLVMSQSTYAWWAAWLGDAEEVHYPLAGDWWGKGPRHT--LYPVDEPRYVFHD 508          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: A0A382I3S7_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382I3S7_9ZZZZ)

HSP 1 Score: 53.1 bits (126), Expect = 9.380e-7
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1
Query:   16 DNYLHAFCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRLLVFDETRYVYRN 204
            ++ LH F FL  A RL +A+STFSWWA +LG A  I++P         + L V +E RYV  N
Sbjct:  138 EDTLHDFAFLASAKRLCIANSTFSWWAGWLGNAERIYYP--DMKIDYFNNLWVHNENRYVRIN 198          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-6
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   34 FCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRLLVFDETRYVYRN 204
            F +L RA RL + +ST+SWWAA++G+ATE+H P  G G+         DE RYV+ +
Sbjct:  164 FAYLARATRLVVTESTYSWWAAYVGQATEVHAP--GVGTVPVPA----DERRYVFHD 214          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: A0A2H0RNU4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_55_24 TaxID=1974791 RepID=A0A2H0RNU4_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.690e-6
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1
Query:   34 FCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRL---LVFDETRYVY 198
            FC +  A ++A++ S+FSWWAAFL  A  I+FP    G     R    L  DE RYVY
Sbjct:  181 FCLMHSARQIAISQSSFSWWAAFLSHAETIYFPRSLTGPFSPERPDIDLEVDEPRYVY 238          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: A0A7S3JMN3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMN3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.980e-5
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 1
Query:   34 FCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLTSRLLVFDETRYVYRN 204
            F +L  A RL + +STFSWWAA L  ATEIH P  G         +  D+ R+V+ +
Sbjct:  451 FLYLAHATRLIICESTFSWWAAILSNATEIHAPASGMVP------VAIDDPRFVFHD 501          
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Match: F0YD20_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD20_AURAN)

HSP 1 Score: 49.3 bits (116), Expect = 4.160e-5
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   34 FCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGG 141
            F ++ RA RL + +ST+SWWAA+LG A E+H P  G
Sbjct:  368 FLYMTRAKRLVVTESTYSWWAAYLGAADEVHAPASG 403          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21028.5491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G107_ECTSI5.600e-1856.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G104_ECTSI4.330e-1756.06Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
A0A349D2R7_9BACT1.330e-849.18Uncharacterized protein n=1 Tax=Candidatus Peribac... [more]
F2TVY1_SALR55.690e-843.75Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A382I3S7_9ZZZZ9.380e-744.44Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A8J2T2Q7_9STRA1.500e-645.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2H0RNU4_9BACT7.690e-644.83Uncharacterized protein n=1 Tax=Candidatus Peregri... [more]
A0A7S3JMN3_9STRA2.980e-542.11Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YD20_AURAN4.160e-552.78Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21028contigH-paniculata_contig21028:2284..2487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue8.5e-14
Seed eggNOG ortholog2880.D7G104
Hectar predicted targeting categoryother localisation
EggNOG OGs2D12B@1,2SGFI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.321695-CDS-H-paniculata_contig21028:2283..24781622929556.321695-CDS-H-paniculata_contig21028:2283..2478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21028 2284..2478 -
1691480912.271588-CDS-H-paniculata_contig21028:2283..24781691480912.271588-CDS-H-paniculata_contig21028:2283..2478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21028 2284..2478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.333819-UTR-H-paniculata_contig21028:2478..24871622929556.333819-UTR-H-paniculata_contig21028:2478..2487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21028 2479..2487 -
1691480912.2800202-UTR-H-paniculata_contig21028:2478..24871691480912.2800202-UTR-H-paniculata_contig21028:2478..2487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21028 2479..2487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21028.5491.1prot_H-paniculata_contig21028.5491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21028 2284..2478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21028.5491.1

>prot_H-paniculata_contig21028.5491.1 ID=prot_H-paniculata_contig21028.5491.1|Name=mRNA_H-paniculata_contig21028.5491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MVDNYLHAFCFLQRANRLAMADSTFSWWAAFLGRATEIHFPFGGKGSHLT
SRLLVFDETRYVYRN
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mRNA from alignment at H-paniculata_contig21028:2284..2487-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21028.5491.1 ID=mRNA_H-paniculata_contig21028.5491.1|Name=mRNA_H-paniculata_contig21028.5491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig21028:2284..2487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCAGGACATGGTCGACAACTACTTGCACGCTTTTTGCTTCCTGCAACG AGCGAATCGCTTAGCGATGGCGGACAGCACGTTCAGCTGGTGGGCCGCGT TTCTGGGTAGGGCGACCGAGATTCACTTCCCTTTCGGGGGTAAAGGCAGT CACTTGACCTCTCGGCTATTAGTGTTCGACGAGACGCGTTATGTGTACAG GAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig21028:2284..2487-

>mRNA_H-paniculata_contig21028.5491.1 ID=mRNA_H-paniculata_contig21028.5491.1|Name=mRNA_H-paniculata_contig21028.5491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig21028:2284..2487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGACAACTACTTGCACGCTTTTTGCTTCCTGCAACGAGCGAATCG
CTTAGCGATGGCGGACAGCACGTTCAGCTGGTGGGCCGCGTTTCTGGGTA
GGGCGACCGAGATTCACTTCCCTTTCGGGGGTAAAGGCAGTCACTTGACC
TCTCGGCTATTAGTGTTCGACGAGACGCGTTATGTGTACAGGAATATGGT
CGACAACTACTTGCACGCTTTTTGCTTCCTGCAACGAGCGAATCGCTTAG
CGATGGCGGACAGCACGTTCAGCTGGTGGGCCGCGTTTCTGGGTAGGGCG
ACCGAGATTCACTTCCCTTTCGGGGGTAAAGGCAGTCACTTGACCTCTCG
GCTATTAGTGTTCGACGAGACGCGTTATGTGTACAGGAAT
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