mRNA_H-paniculata_contig21021.5490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21021.5490.1
Unique NamemRNA_H-paniculata_contig21021.5490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: D7FVL3_ECTSI (ThiF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL3_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 5.430e-23
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 GYAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            GYAAVLLVDE +G QLR NEACRRAGTAF++ SSRGAFASLFCDFG++FVV D DGEE
Sbjct:  137 GYAAVLLVDETVGFQLRANEACRRAGTAFVSASSRGAFASLFCDFGDSFVVQDTDGEE 194          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: K1R3M4_CRAGI (E1 ubiquitin-activating enzyme n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1R3M4_CRAGI)

HSP 1 Score: 65.9 bits (159), Expect = 3.870e-11
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 GYAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            G+  V+L + +L  ++R+ E C +    F++  SRG FA LFCDFG+ FVV+DVDGEE
Sbjct:  207 GFQVVVLTNSNLEEKIRIGEICHKNNIKFISVDSRGLFAELFCDFGDNFVVNDVDGEE 264          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: A0A812DH90_SEPPH (E1 ubiquitin-activating enzyme n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DH90_SEPPH)

HSP 1 Score: 65.9 bits (159), Expect = 3.900e-11
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    4 YAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            +  V+L +  L  QLR+N+ CR+ G  F+  S++G F  +FCDFGE FVV DVDGE+
Sbjct:  294 FQVVVLSNSSLDEQLRINDFCRKYGMKFIVASTKGLFGQIFCDFGENFVVTDVDGEQ 350          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: A0A6H5J7N3_9PHAE (E1 ubiquitin-activating enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7N3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.330e-11
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    4 YAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            Y  V+++D  L  QLRVN+ C   G  F++  +RG FA  FCDFGE+FVV D DG +
Sbjct:  200 YQVVVMIDAPLDEQLRVNDICHAKGVCFISCDARGVFAYAFCDFGESFVVSDTDGNQ 256          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: A0A8B8DVP4_CRAVI (E1 ubiquitin-activating enzyme n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DVP4_CRAVI)

HSP 1 Score: 63.9 bits (154), Expect = 1.860e-10
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 YAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            +  V+L + +L  ++++ E C +    F++  SRG FA LFCDFGE+FV++DVDGEE
Sbjct:  171 FQVVVLTNSNLDEKIKIGELCHKNNIKFISVDSRGLFAELFCDFGESFVINDVDGEE 227          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: A0A177EBK6_9MICR (Ubiquitin-activating enzyme E1 n=1 Tax=Nematocida displodere TaxID=1805483 RepID=A0A177EBK6_9MICR)

HSP 1 Score: 62.4 bits (150), Expect = 6.490e-10
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 GYAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            GY AV++ D  L  Q+ +N+ACR+    F+   SRG F  +FCDFG++FV  D +GEE
Sbjct:  119 GYTAVVVCDATLKQQIEINQACRKDQVPFIVARSRGLFFQVFCDFGDSFVTTDENGEE 176          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: K3WKD4_GLOUD (E1 ubiquitin-activating enzyme n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKD4_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 6.500e-10
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    4 YAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            + AV+LV+  L   LR+N+ C     AF++T +RG F S+FCDFG+ FVV D DGE+
Sbjct:  147 FRAVVLVNSTLKESLRINQICHVHSIAFVSTEARGVFGSVFCDFGDEFVVSDRDGEQ 203          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: K1R1M7_CRAGI (E1 ubiquitin-activating enzyme n=6 Tax=Crassostrea gigas TaxID=29159 RepID=K1R1M7_CRAGI)

HSP 1 Score: 62.0 bits (149), Expect = 8.870e-10
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   13 VLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            V+L + +L  ++R+ E C +    F++  SRG FA LFCDFG+ FVV+DVDGEE
Sbjct:   39 VVLTNSNLEEKIRIGEICHKNNIKFISVDSRGLFAELFCDFGDIFVVNDVDGEE 92          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: A0A1W0ABW4_9STRA (E1 ubiquitin-activating enzyme (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABW4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-9
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    4 YAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            Y  V+L +       R+NE C +   AF+AT SRG F S+FCDFG+ F+V D DGE+
Sbjct:  115 YRVVVLSNGSRSYAKRINEICHKRNIAFIATESRGVFGSVFCDFGDEFIVSDKDGEQ 171          
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Match: A0A1V9ZFG0_9STRA (E1 ubiquitin-activating enzyme n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFG0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.660e-9
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    4 YAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFVVDDVDGEE 174
            +  V+L +   G  +++N+ C +   AF+AT +RG F S+FCDFG++FVV D DGE+
Sbjct:  117 FRVVVLSNASRGHAIKINQICHKHNIAFIATEARGVFGSVFCDFGDSFVVSDKDGEQ 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21021.5490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL3_ECTSI5.430e-2381.03ThiF domain-containing protein n=1 Tax=Ectocarpus ... [more]
K1R3M4_CRAGI3.870e-1148.28E1 ubiquitin-activating enzyme n=1 Tax=Crassostrea... [more]
A0A812DH90_SEPPH3.900e-1149.12E1 ubiquitin-activating enzyme n=1 Tax=Sepia phara... [more]
A0A6H5J7N3_9PHAE5.330e-1149.12E1 ubiquitin-activating enzyme n=2 Tax=Ectocarpus ... [more]
A0A8B8DVP4_CRAVI1.860e-1045.61E1 ubiquitin-activating enzyme n=2 Tax=Crassostrea... [more]
A0A177EBK6_9MICR6.490e-1046.55Ubiquitin-activating enzyme E1 n=1 Tax=Nematocida ... [more]
K3WKD4_GLOUD6.500e-1049.12E1 ubiquitin-activating enzyme n=1 Tax=Globisporan... [more]
K1R1M7_CRAGI8.870e-1050.00E1 ubiquitin-activating enzyme n=6 Tax=Crassostrea... [more]
A0A1W0ABW4_9STRA1.640e-947.37E1 ubiquitin-activating enzyme (Fragment) n=1 Tax=... [more]
A0A1V9ZFG0_9STRA1.660e-943.86E1 ubiquitin-activating enzyme n=1 Tax=Achlya hypo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21021contigH-paniculata_contig21021:200..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7FVL3
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGsCOG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.2789268-CDS-H-paniculata_contig21021:199..3731622929556.2789268-CDS-H-paniculata_contig21021:199..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21021 200..373 +
1691480912.2573276-CDS-H-paniculata_contig21021:199..3731691480912.2573276-CDS-H-paniculata_contig21021:199..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21021 200..373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21021.5490.1prot_H-paniculata_contig21021.5490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21021 200..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21021.5490.1

>prot_H-paniculata_contig21021.5490.1 ID=prot_H-paniculata_contig21021.5490.1|Name=mRNA_H-paniculata_contig21021.5490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
GYAAVLLVDEDLGTQLRVNEACRRAGTAFLATSSRGAFASLFCDFGETFV
VDDVDGEE
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mRNA from alignment at H-paniculata_contig21021:200..373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21021.5490.1 ID=mRNA_H-paniculata_contig21021.5490.1|Name=mRNA_H-paniculata_contig21021.5490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig21021:200..373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTATGCTGCGGTCCTGCTGGTGGACGAGGACCTGGGTACTCAGCTGCG GGTGAACGAGGCCTGCCGGCGCGCGGGGACGGCATTCTTGGCCACTTCTT CCAGGGGCGCGTTCGCGAGTTTGTTCTGCGATTTCGGAGAAACGTTTGTC GTTGACGATGTGGACGGCGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21021:200..373+

>mRNA_H-paniculata_contig21021.5490.1 ID=mRNA_H-paniculata_contig21021.5490.1|Name=mRNA_H-paniculata_contig21021.5490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig21021:200..373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTATGCTGCGGTCCTGCTGGTGGACGAGGACCTGGGTACTCAGCTGCG
GGTGAACGAGGCCTGCCGGCGCGCGGGGACGGCATTCTTGGCCACTTCTT
CCAGGGGCGCGTTCGCGAGTTTGTTCTGCGATTTCGGAGAAACGTTTGTC
GTTGACGATGTGGACGGCGAGGAGGGCTATGCTGCGGTCCTGCTGGTGGA
CGAGGACCTGGGTACTCAGCTGCGGGTGAACGAGGCCTGCCGGCGCGCGG
GGACGGCATTCTTGGCCACTTCTTCCAGGGGCGCGTTCGCGAGTTTGTTC
TGCGATTTCGGAGAAACGTTTGTCGTTGACGATGTGGACGGCGAGGAG
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