mRNA_H-paniculata_contig1086.546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1086.546.1 vs. uniprot
Match: D8LG39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG39_ECTSI) HSP 1 Score: 226 bits (576), Expect = 1.780e-57 Identity = 387/907 (42.67%), Postives = 449/907 (49.50%), Query Frame = 3
Query: 480 WKDVQEGDPTAHPAAIDGGEAEGSSITQVVRGNYSKASKGI------------FMGSSSSGLKGLKGSLLGDNDDPISEAPADGGRASGAGAGRGSVTRTSEGARGRQGLWEEAGKGEMDLISAALAPGGCGDVHACQVDGWTALHTAADAGHR-TVVTLLLRKGASPAARARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPDAWGRNPAAVARQLGRPGPLKLLEVAAGGXXXXXXDHASPLAVSMRSPDGREG------------------------------DGEGGEEAE---GGGSETRRRRISGSRWVVMNESGCMLERSSGKVALFRSMAAAADWANSL----KIKSGSFQVAEVAPNMHKAFEREIDFEITGGGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AEKLAEVTAERDLHREKAVSLQRALEAVIKEYEAAAXXXXXXXSDASIESRTTNADTSVERPPRDSEVVDGGVEGEGGGASAETTANLLVNLDDPDRGAVDVGH--------------------------GSSGCE-----------GDLFVSGAEEERVVGKEGSEGXXXXXXXXXXXXXXXXXXXSCSSSSSDYDGDRP--LISFGDDENGGENSNGAPLLSFEDDGGDHQQSRSASKGDNAVAGCGEPGDVLGALGGSNSND----------HQARNTADEDAVDGDGSMMLGEGIRQLVEAAAVRVVQAGKGGQDEAVSEEEEDSGDDEAAQAKLAAWLSGLKIRRADAARYAGSLVADGFDSGEALRGVREEELMQYGMKKGHARLVVRTL 2900
W+D+QEG + G G S R S A+ G+ +G SSSGLKGLK SLL ++ D I AS AGA + G +GR GLW+EA G++ ++AAL PGG GDVHAC DGWTALH+AA AGH V++LL+ GASPA+ ARR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPDAWGR+PAAVARQL R GPLKLLE A XXXXXX +G EEAE G G + + G+RWVVMNESG MLER SGKVALF+SMAAA DWAN L +I SGSFQVAEV P+M KAFE+E+ FEITGGGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A +L E E D+HR+KA SL+RALEAV+KE + ++A+ + E G A A ++L+ +D P G+ D G G E G + E E G EG+E XXXXXX + SSS+ P ++ G +A+ S + + + G GS +L G + + G GG E A +LAAWLSGLKIR DA+RYAG LVADGFDS EALRGVREEEL+QYGMKKGHARLVVR L
Sbjct: 2 WRDIQEG--SLRGGDYGEGSGRGFSGESGSRATASAANAGVGVVRDALAAGVSSVGKSSSGLKGLKTSLLKEDGDTIPPRTL----ASDAGA------SPAAGNKGR-GLWDEAAAGDLAALAAALTPGGEGDVHACNGDGWTALHSAAHAGHGLAVISLLVGSGASPASVARRGYTPLHSACMRGRWHSAAALLALGADANVRADDQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHFPPDAWGRDPAAVARQLDRAGPLKLLEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVDDEEAERVIGEGGQKGATAVVGNRWVVMNESGRMLERRSGKVALFKSMAAAVDWANGLTLDREITSGSFQVAEVVPDMRKAFEKEVLFEITGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDEARAMVAATANRLREAQQEADMHRQKAASLERALEAVLKECD-----DIVKAAEAAGARGLAEVSATGEEXXXXXXXXXXGCPVSTAAADAAAAPSMLLGVDSPAAGSSDAXXXXXXXXXXXXXXXXXXXXXXXXLNFDGGDGEEEARPTSPSPSAGAGAPACGEPEPAEGTEGAESSGSEEGSSXXXXXXASDEEAQLDSSSEQSAAEPSTILGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASAIXXXXXXXXXXXXXXAEASASXXXXXXXXXXQSRQQPSPQGEAGGAGSSLLDFGDNTGDQHSTTASAANGTGGNXXXXXXXEA------AVVERLAAWLSGLKIREPDASRYAGRLVADGFDSEEALRGVREEELLQYGMKKGHARLVVRLL 884
BLAST of mRNA_H-paniculata_contig1086.546.1 vs. uniprot
Match: A0A6H5JAE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAE9_9PHAE) HSP 1 Score: 163 bits (412), Expect = 8.760e-39 Identity = 223/516 (43.22%), Postives = 260/516 (50.39%), Query Frame = 3
Query: 1491 MNESGCMLERSSGKVALFRSMAAAADWANSL----KIKSGSFQVAEVAPNMHKAFEREIDFEITGGGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AEKLAEVTAERDLHREKAVSLQRALEAVIKEYEAAAXXXXXXXSDASIESRTTNADT---------------------------SVERPPRDSEVVDGGVEGEGGGASAETTANL---LVNLDDPDRGAVDVGHGSSGCEGDLFVSGAEEERVVGKEGSEGXXXXXXXXXXXXXXXXXXXSCSSSSSDYDGDRPLISFGDDENGGENSNG------APLLSFEDDGGDHQQSRSASKGDNAVAGCGEPGDVLGALGGSNSND-----HQARNTADEDAVDGDGSMMLGEGIRQLVEAAAVRVVQAGKGGQDEAVSEEEEDSGDDEAAQAKLAAWLSGLKIRRADAARYAGSLVADGFDSGEALRGVREEELMQYGMKKGHARLVVRTL 2900
MNESG MLER SGKVALF+SMAAA DWAN L +I SGSFQVAEV P+M KAFE+E+ FEITGGGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A +L EV E D+HR+KA SL+RALEAV+KE + + E T + V+ P DS+ + G S + T L+N D D S G + E E G EG+E + SSS+ + G D++ + +G AP L DG D S AS A + ++ + G GS +L G + V G GG D A ED G+ Q +LA WLSGLKIR DA+RYAG LVADGFDS EALRGVREEEL+QYGMKKGHARLVVR L
Sbjct: 1 MNESGRMLERRSGKVALFKSMAAAVDWANGLTLDREITSGSFQVAEVVPDMRKAFEKEVLFEITGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARAIVAATANRLREVQEEADMHRQKAASLERALEAVLKECDDLVKAAEAGGARGLAEVSATGEEXXXXXXXXXXXXXXXXXXXXXXXPSMLLGVDSPGADSDASPPLLLLGEGDPSQQATGEAEPSLLNFDGNDGEEEAHPTSPSPSAGTSAPACGEPEPAGGTEGAESSGSEEGSFCGEDDEALDEEAQLDSSSEQSAAEASMLLGVDDDAADGDSGNRDAASAPSLLLGADGPDAAGSSEASAXXXXXXXXXXXXXAAEAXXXXXXXXXXXXXRSRQQSSPQGETGGAGSSLLDFGDETGDQHTTSAAVANGTGGNDGA-----EDGGEAVVVQ-RLATWLSGLKIREPDASRYAGRLVADGFDSEEALRGVREEELLQYGMKKGHARLVVRLL 510
BLAST of mRNA_H-paniculata_contig1086.546.1 vs. uniprot
Match: A0A7S2BLB3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLB3_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.080e-5 Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 3
Query: 2727 LAAWL-SGLKIRRADAARYAGSLVADGFDSGEALRGVREEELMQYGMKKGHARLVVRTLAE 2906
L+ WL + IR DA RYA LV DGFD AL E++L+ YG K+GHARLV+R L++
Sbjct: 68 LSRWLETSCHIRSVDAERYAKLLVDDGFDCIHALEMTSEDDLIGYGFKRGHARLVLRELSK 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1086.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1086.546.1 >prot_H-paniculata_contig1086.546.1 ID=prot_H-paniculata_contig1086.546.1|Name=mRNA_H-paniculata_contig1086.546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=946bp MDFAPDVTSVGGGYYERYVSESESTDGEGDASGGGVGQRRHKHTATSSETback to top mRNA from alignment at H-paniculata_contig1086:1270..16805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1086.546.1 ID=mRNA_H-paniculata_contig1086.546.1|Name=mRNA_H-paniculata_contig1086.546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15536bp|location=Sequence derived from alignment at H-paniculata_contig1086:1270..16805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1086:1270..16805+ >mRNA_H-paniculata_contig1086.546.1 ID=mRNA_H-paniculata_contig1086.546.1|Name=mRNA_H-paniculata_contig1086.546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5676bp|location=Sequence derived from alignment at H-paniculata_contig1086:1270..16805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |