mRNA_H-paniculata_contig2099.5469.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2099.5469.1
Unique NamemRNA_H-paniculata_contig2099.5469.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2099.5469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2099contigH-paniculata_contig2099:5507..9973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001770.1
Exons2
Model size1778
Cds size1776
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929552.9998357-CDS-H-paniculata_contig2099:5506..59921622929552.9998357-CDS-H-paniculata_contig2099:5506..5992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2099 5507..5992 +
1691480910.825277-CDS-H-paniculata_contig2099:5506..59921691480910.825277-CDS-H-paniculata_contig2099:5506..5992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2099 5507..5992 +
1622929553.0150104-CDS-H-paniculata_contig2099:8682..99721622929553.0150104-CDS-H-paniculata_contig2099:8682..9972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2099 8683..9972 +
1691480910.8340445-CDS-H-paniculata_contig2099:8682..99721691480910.8340445-CDS-H-paniculata_contig2099:8682..9972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2099 8683..9972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2099.5469.1prot_H-paniculata_contig2099.5469.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2099 5507..9972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2099.5469.1

>prot_H-paniculata_contig2099.5469.1 ID=prot_H-paniculata_contig2099.5469.1|Name=mRNA_H-paniculata_contig2099.5469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=592bp
PRCTIGTEGCGPVMGVERRPWPRAPGSGGGGKVSGDKNSADDGRGGGGGG
GGGDSSGGHEAASGIIPNTRPADTKKKNTASSAHNSSSNSSSSSSSSSSK
NNSNRSTILCMADTRRTSGEGIDVEHVAADPATPPRARGWCRDSGPAGGR
RRWRRPTLQQLEVTRSPSYLHGSGGLTISSPPVSVPGRRAGPPRSRSAAL
SPTRGVTSRTNCSNKATAPLRGHKPKKGTTRTITTITTTPGESTGNAVAA
GGSNGLALPPPFLPPPPIQRDSCCRRCTSADSSTGNANARRGGGGGGGGG
LLGGVPMTPTTVRDRERDCCRRMSGNRNLRAGSGGSWNGSSYPTGGATGG
GGDTPTAASTLGGGSCSTPRICSPPTSCQSRATIIRGEYIGGRRGRSSRS
GSRGGGGGVDSNERFHRLRGCCGDHGYESGSAAGGEAAAAAGATTELSGT
AGDSGSGSGGSDGARGGVDPPGSASSGGDMAAASGSGLDKLSSPEAEGGE
GAGGRHSTVHGTDGCGGDGAGGAAAAAVAVTAVVEGGERPRDRSADTSSS
VERFSDDLDAAGDDGEENGEFYRRGGGGDAAGWSGGGHREDG
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mRNA from alignment at H-paniculata_contig2099:5507..9973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2099.5469.1 ID=mRNA_H-paniculata_contig2099.5469.1|Name=mRNA_H-paniculata_contig2099.5469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4467bp|location=Sequence derived from alignment at H-paniculata_contig2099:5507..9973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACGGTGCACCATCGGTACCGAAGGTTGTGGTCCTGTGATGGGAGTCGA
GCGGAGGCCATGGCCGCGTGCCCCAGGCAGTGGTGGCGGAGGAAAAGTCT
CCGGGGACAAAAATAGTGCCGACGATGGCCGGGGTGGCGGCGGAGGCGGC
GGTGGTGGCGACAGCAGCGGGGGTCATGAAGCCGCTAGTGGAATAATTCC
CAACACGCGCCCAGCAGACACAAAGAAAAAGAACACTGCCTCGTCTGCAC
ACAACAGCAGCAGCAACAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
AACAACAGCAACAGAAGCACAATACTATGTATGGCAGATACTAGACGAAC
ATCAGGGGAAGGGATCGATGTGGAGCACGTTGCGGCGGACCCGGCGACCC
CTCCACGTGCGAGAGGGTGGTGTCGCGATTCTGGACCGGCCGGGGGGCGG
CGGCGGTGGCGGCGACCTACTCTGCAGCAACTGGAGGTGGGTGGGACACC
ATCACACCTTTCTGTTGGTTATTTTGTATGACTCTCTTGACTATTTACAG
CACTATCCCCTGTCAAAGATCATTTTTGTGGTAGTCTACCCAGGACGCGT
AGCAAGCGCTGCTACATAACGGCACTCCGTACCAGAGCGCGGCCTGGTTG
CTGGTCGCGTTCGGGGTCTATCGAGTTCCCGTAAACCTGAGAATAATGGT
CCTCTCAGCTTTTTCAACAGTCAGCCACCATGAGCCTTCCAGACTCTTTC
CAGAGTGCAGTTACTGACTATGTCCTAGTGAAGACATCGGCAATAGTCGG
GTGTCGTACTACGGACTCTCAAAGCCGCCTCTTTGCGCTGTGAATAAAGC
TGAACAGCATGTTGGTATTTAAGTCCTGGTGATGGCAGCCGGTTTCCCGA
TTCCTGTACGCTGCTAAAATTTTTCTCACGAAAAAAAATCGAAAAAATGT
GACTCCGCCGAAAAGCTTCGTCTCAAAAATATTCAGTAACTCTGCCGGGT
ACTCTTACCCCTGTCAATTCAATTTTTTCACCTGTGATTGTTCTAGGAAC
ATTTTTCTTCGTTCTTAACTTGACTGTACTACTGAAGTTTGATTCGGTAA
TGTACTGTTTCTTACAAGTGGTCCCAACTCGGGGCTCTTTCGTGAAAGTG
ACGCTACCCCGGTCGGGTCTTCTTCATTTTGGGCCAAGACCATTTTTGGC
GCCAGCGAAACTGCAATAAAAAGAAGAGAACCTGGGACGAGAGGAAAACA
CCAGCACGGAACGGGCAATCGTCGCTCACCTTCTTGGGACACACATTTCA
ATAAAGTGTAGAAACTGTTGACGAAAGTTTCTCCCCGCAGTCGATCTCTA
GATCGAGCTCCAATGCAGTCTGTGCCCCTTTAACCCTACCCTGTGGTACT
GAAGAACCTCCCGTACGTGGTACTGCGAGATAGGAAGGTCCCTCAATCCT
TCCCATCCATCCATAACCTGAAAACGCGGAAGGAAACGCTTATAACATGA
TCACGGGGCTACTTGTAAGGAGCCGCCGCTGTAAGACAAAACAATCCCGG
GGACAGTTGGGTGACGAATTGTGGTGCTTCAAGAAGAAACGAGAAAAGGA
AACCACCCAAAAACCGAAATATTTATCTTGACCCTTGCTGTGGCACACGC
TGTTTTATGTTGGGTTGTAATTTTTCCAAGTGTCCGTTGTGAGTTGGAAT
TGAACGGGCGTCGTCGCCAGTTTTCCTATGATCATTGATAAGTTATACTT
GGGTGAGCTTGAAGAAATGAGATAATCAGCACCTTTTTTTGCCGGATTGT
TGTTTCCCAATTTTTTGCACGACCTACCGCATGTATTCACTGCCACAGTC
AGACCATATCTTTGTCTTTTTTTATCTGTTTTTCGCCGTTGGCAAATTGT
GGCACATTGATCGTAGATAGACAAAAAGCAGCCTGCAGCACCACCACCAC
ACGAACCAAAGCAGGACCCCCCCCCCCCCGGTAAAAAGGCAAGTGATCAG
CACGTCGACGTAAGACGGCTTTGGAAACAAGCTTTTTTGTGATGAAGAGA
TATCCGAACAAGGAAACTTTCAAAACTATCCACTGAATCCATGAATAGAA
GGAGCGAAAACTGGTAAATTGAACACAGTTCTCAATAGCCAGAAGGAAAT
AAAGTAGAAATGATCCCCTTGCCAACGGCGAGCGACATGGAAAAAGTGTA
TAGTTGATATTTATTTCAAGGTCGCGCAAGTGGCCGAGAATTCTGTGACG
TAAATTAAGCACCTTCGCAGGGCGCTGCTGTGGAAGGTGCACCGAAGTTC
TCACGTTTTTTTCGTTCGATCAGAAGATCGTAAAGTGTAGGTATAATGAA
TGATATTGATATATAGTTTGATGGATGTCCGATCCCATAATGATGAGTTG
CACCGTGACTTTTTCCGATTTATTGACATACGGGGCCTTTTTTTCTCTTT
TACTGCCTTCTTAGGGATGGCTACGCGAATGCGGGGTGATCTAACCAGTT
CACGAGCTAGAGTAAGATGTTTTGAGAATACGTCACCAGCCTGTCGCCAT
TCGAGAGTTGCCTCATGTTACCGTTCAAGGGAATATCTTATATCACATGT
GCAGACGGTTGTCGTTTATGCCGCGATTGTCGACAGCTTACAGCAAAATG
GCTCAACATGTCATGAAGTGGGCAGCGTTGACAACGTGACGATACTGGAA
CAAGACTCAACACTAGTACGTACATGCACATGGTGTTTAGACCATGATTT
GTAAAATATTAGATATTGAAATGGCCGGCCCAACGACCATACGCGAAGTT
AGCGTGTAATGCCTGTTCAAGGTCGGACGTGAACCCATGCTCTATTCTTC
TGCTCTGTTTTTGATATTCAACATTTTGTTTACATGGTTTACTTTCATGT
CGGCATAGTGTGATTAATAGTCCCTAGATGCTGTTTAAAACACTGAACAA
TATTTTGTATATATGGTATACTTTAATGTCCACAAATTGCGATGAATTGC
ATAACCTTAAACCAAGGTCGTTCAGCATACTTACCAGAAAGAATCTGGCA
ATCGCTTGAGATGTTCGTTAAGTACAGACTGTAAACGGTGTTCCATGTCC
TGAGCTTCACGATACATGTTGCATACTGAAAAAAAATATATATGCAATCG
GCCACCGTTTACTCTGACCCACACAGGTAACCAGGTCGCCAAGTTATCTG
CACGGTTCTGGAGGATTGACTATCTCTTCCCCTCCGGTCTCCGTGCCGGG
CCGGCGGGCCGGGCCGCCGCGGTCGAGGTCCGCTGCCTTGAGCCCGACCC
GTGGGGTCACCAGCAGAACGAACTGTAGCAACAAGGCCACCGCTCCGCTT
CGCGGTCACAAGCCTAAGAAAGGAACGACAAGGACGATAACAACAATAAC
AACGACACCTGGAGAATCCACGGGCAATGCCGTTGCTGCGGGCGGCAGCA
ACGGTCTTGCTTTGCCTCCTCCCTTTCTCCCGCCCCCTCCCATCCAACGT
GACAGCTGCTGCCGCAGGTGCACCAGTGCGGACAGCTCCACCGGTAACGC
CAACGCACGGAGAGGCGGCGGTGGCGGCGGCGGTGGAGGACTGTTGGGTG
GGGTGCCGATGACGCCCACGACGGTAAGGGACAGAGAGCGCGACTGCTGC
CGTCGCATGAGCGGGAACAGGAACTTGCGAGCCGGTTCTGGTGGTTCCTG
GAACGGTTCGAGCTACCCCACCGGAGGTGCAACGGGAGGAGGAGGAGATA
CCCCGACGGCAGCAAGCACACTTGGCGGAGGTTCTTGCTCTACCCCCCGC
ATTTGCTCGCCGCCGACGTCATGCCAAAGCAGGGCGACCATCATCCGCGG
AGAGTACATTGGTGGCCGCCGAGGCCGCAGCAGCCGTAGCGGAAGCCGTG
GCGGCGGCGGTGGCGTCGACAGCAACGAACGATTTCACCGGTTGCGGGGT
TGTTGCGGAGACCACGGTTACGAAAGCGGCTCGGCTGCCGGAGGCGAAGC
TGCTGCTGCCGCTGGCGCAACAACGGAACTCAGCGGGACAGCCGGCGATA
GCGGCAGCGGCAGTGGTGGCAGTGATGGTGCGCGTGGTGGTGTCGATCCA
CCGGGTAGCGCCAGCAGCGGCGGTGACATGGCAGCGGCATCCGGGTCTGG
GCTCGATAAATTGAGCTCACCGGAGGCGGAAGGAGGAGAAGGAGCAGGAG
GCAGGCACAGCACGGTACACGGAACTGATGGTTGCGGTGGGGATGGTGCT
GGCGGCGCGGCAGCGGCAGCGGTAGCGGTAACGGCTGTGGTGGAGGGGGG
TGAGAGACCTAGGGACAGATCGGCAGATACCTCATCTTCGGTGGAACGAT
TTTCCGATGACTTGGATGCTGCGGGTGATGATGGTGAAGAAAATGGAGAG
TTTTATCGTCGCGGTGGTGGTGGGGATGCCGCGGGATGGTCTGGTGGCGG
GCACCGTGAGGATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2099:5507..9973+

>mRNA_H-paniculata_contig2099.5469.1 ID=mRNA_H-paniculata_contig2099.5469.1|Name=mRNA_H-paniculata_contig2099.5469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3552bp|location=Sequence derived from alignment at H-paniculata_contig2099:5507..9973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACGGTGCACCATCGGTACCGAAGGTTGTGGTCCTGTGATGGGAGTCGA
GCGGAGGCCATGGCCGCGTGCCCCAGGCAGTGGTGGCGGAGGAAAAGTCT
CCGGGGACAAAAATAGTGCCGACGATGGCCGGGGTGGCGGCGGAGGCGGC
GGTGGTGGCGACAGCAGCGGGGGTCATGAAGCCGCTAGTGGAATAATTCC
CAACACGCGCCCAGCAGACACAAAGAAAAAGAACACTGCCTCGTCTGCAC
ACAACAGCAGCAGCAACAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAAG
AACAACAGCAACAGAAGCACAATACTATGTATGGCAGATACTAGACGAAC
ATCAGGGGAAGGGATCGATGTGGAGCACGTTGCGGCGGACCCGGCGACCC
CTCCACGTGCGAGAGGGTGGTGTCGCGATTCTGGACCGGCCGGGGGGCGG
CGGCGGTGGCGGCGACCTACTCTGCAGCAACTGGAGCCACGGTGCACCAT
CGGTACCGAAGGTTGTGGTCCTGTGATGGGAGTCGAGCGGAGGCCATGGC
CGCGTGCCCCAGGCAGTGGTGGCGGAGGAAAAGTCTCCGGGGACAAAAAT
AGTGCCGACGATGGCCGGGGTGGCGGCGGAGGCGGCGGTGGTGGCGACAG
CAGCGGGGGTCATGAAGCCGCTAGTGGAATAATTCCCAACACGCGCCCAG
CAGACACAAAGAAAAAGAACACTGCCTCGTCTGCACACAACAGCAGCAGC
AACAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAACAACAGCAACAG
AAGCACAATACTATGTATGGCAGATACTAGACGAACATCAGGGGAAGGGA
TCGATGTGGAGCACGTTGCGGCGGACCCGGCGACCCCTCCACGTGCGAGA
GGGTGGTGTCGCGATTCTGGACCGGCCGGGGGGCGGCGGCGGTGGCGGCG
ACCTACTCTGCAGCAACTGGAGGTAACCAGGTCGCCAAGTTATCTGCACG
GTTCTGGAGGATTGACTATCTCTTCCCCTCCGGTCTCCGTGCCGGGCCGG
CGGGCCGGGCCGCCGCGGTCGAGGTCCGCTGCCTTGAGCCCGACCCGTGG
GGTCACCAGCAGAACGAACTGTAGCAACAAGGCCACCGCTCCGCTTCGCG
GTCACAAGCCTAAGAAAGGAACGACAAGGACGATAACAACAATAACAACG
ACACCTGGAGAATCCACGGGCAATGCCGTTGCTGCGGGCGGCAGCAACGG
TCTTGCTTTGCCTCCTCCCTTTCTCCCGCCCCCTCCCATCCAACGTGACA
GCTGCTGCCGCAGGTGCACCAGTGCGGACAGCTCCACCGGTAACGCCAAC
GCACGGAGAGGCGGCGGTGGCGGCGGCGGTGGAGGACTGTTGGGTGGGGT
GCCGATGACGCCCACGACGGTAAGGGACAGAGAGCGCGACTGCTGCCGTC
GCATGAGCGGGAACAGGAACTTGCGAGCCGGTTCTGGTGGTTCCTGGAAC
GGTTCGAGCTACCCCACCGGAGGTGCAACGGGAGGAGGAGGAGATACCCC
GACGGCAGCAAGCACACTTGGCGGAGGTTCTTGCTCTACCCCCCGCATTT
GCTCGCCGCCGACGTCATGCCAAAGCAGGGCGACCATCATCCGCGGAGAG
TACATTGGTGGCCGCCGAGGCCGCAGCAGCCGTAGCGGAAGCCGTGGCGG
CGGCGGTGGCGTCGACAGCAACGAACGATTTCACCGGTTGCGGGGTTGTT
GCGGAGACCACGGTTACGAAAGCGGCTCGGCTGCCGGAGGCGAAGCTGCT
GCTGCCGCTGGCGCAACAACGGAACTCAGCGGGACAGCCGGCGATAGCGG
CAGCGGCAGTGGTGGCAGTGATGGTGCGCGTGGTGGTGTCGATCCACCGG
GTAGCGCCAGCAGCGGCGGTGACATGGCAGCGGCATCCGGGTCTGGGCTC
GATAAATTGAGCTCACCGGAGGCGGAAGGAGGAGAAGGAGCAGGAGGCAG
GCACAGCACGGTACACGGAACTGATGGTTGCGGTGGGGATGGTGCTGGCG
GCGCGGCAGCGGCAGCGGTAGCGGTAACGGCTGTGGTGGAGGGGGGTGAG
AGACCTAGGGACAGATCGGCAGATACCTCATCTTCGGTGGAACGATTTTC
CGATGACTTGGATGCTGCGGGTGATGATGGTGAAGAAAATGGAGAGTTTT
ATCGTCGCGGTGGTGGTGGGGATGCCGCGGGATGGTCTGGTGGCGGGCAC
CGTGAGGATGGGGTAACCAGGTCGCCAAGTTATCTGCACGGTTCTGGAGG
ATTGACTATCTCTTCCCCTCCGGTCTCCGTGCCGGGCCGGCGGGCCGGGC
CGCCGCGGTCGAGGTCCGCTGCCTTGAGCCCGACCCGTGGGGTCACCAGC
AGAACGAACTGTAGCAACAAGGCCACCGCTCCGCTTCGCGGTCACAAGCC
TAAGAAAGGAACGACAAGGACGATAACAACAATAACAACGACACCTGGAG
AATCCACGGGCAATGCCGTTGCTGCGGGCGGCAGCAACGGTCTTGCTTTG
CCTCCTCCCTTTCTCCCGCCCCCTCCCATCCAACGTGACAGCTGCTGCCG
CAGGTGCACCAGTGCGGACAGCTCCACCGGTAACGCCAACGCACGGAGAG
GCGGCGGTGGCGGCGGCGGTGGAGGACTGTTGGGTGGGGTGCCGATGACG
CCCACGACGGTAAGGGACAGAGAGCGCGACTGCTGCCGTCGCATGAGCGG
GAACAGGAACTTGCGAGCCGGTTCTGGTGGTTCCTGGAACGGTTCGAGCT
ACCCCACCGGAGGTGCAACGGGAGGAGGAGGAGATACCCCGACGGCAGCA
AGCACACTTGGCGGAGGTTCTTGCTCTACCCCCCGCATTTGCTCGCCGCC
GACGTCATGCCAAAGCAGGGCGACCATCATCCGCGGAGAGTACATTGGTG
GCCGCCGAGGCCGCAGCAGCCGTAGCGGAAGCCGTGGCGGCGGCGGTGGC
GTCGACAGCAACGAACGATTTCACCGGTTGCGGGGTTGTTGCGGAGACCA
CGGTTACGAAAGCGGCTCGGCTGCCGGAGGCGAAGCTGCTGCTGCCGCTG
GCGCAACAACGGAACTCAGCGGGACAGCCGGCGATAGCGGCAGCGGCAGT
GGTGGCAGTGATGGTGCGCGTGGTGGTGTCGATCCACCGGGTAGCGCCAG
CAGCGGCGGTGACATGGCAGCGGCATCCGGGTCTGGGCTCGATAAATTGA
GCTCACCGGAGGCGGAAGGAGGAGAAGGAGCAGGAGGCAGGCACAGCACG
GTACACGGAACTGATGGTTGCGGTGGGGATGGTGCTGGCGGCGCGGCAGC
GGCAGCGGTAGCGGTAACGGCTGTGGTGGAGGGGGGTGAGAGACCTAGGG
ACAGATCGGCAGATACCTCATCTTCGGTGGAACGATTTTCCGATGACTTG
GATGCTGCGGGTGATGATGGTGAAGAAAATGGAGAGTTTTATCGTCGCGG
TGGTGGTGGGGATGCCGCGGGATGGTCTGGTGGCGGGCACCGTGAGGATG
GG
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