mRNA_H-paniculata_contig20970.5465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20970.5465.1
Unique NamemRNA_H-paniculata_contig20970.5465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20970.5465.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.300e-8
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   19 QYNGCSSPSKYGPQNEPATLCNDHKKAGMYTIRNGELLRATRNGRA 156
            ++ GC+   +YG +N P TLC  HK+AG+YT+R+G LL ATR+G A
Sbjct:  185 KHTGCTRTPRYGRKNGPLTLCQSHKRAGLYTVRDGVLLVATRDGSA 230
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BLAST of mRNA_H-paniculata_contig20970.5465.1 vs. uniprot
Match: A0A6H5KL62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL62_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.840e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   19 QYNGCSSPSKYGPQNEPATLCNDHKKAGMYTIRNGELLRATRNG 150
            ++ GC    +YG +N P  LC  HK+AG+YT+R+G LL ATR+G
Sbjct:  178 KHAGCFRALRYGRKNGPLMLCQSHKRAGLYTVRDGVLLVATRDG 221
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BLAST of mRNA_H-paniculata_contig20970.5465.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 9.030e-5
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:   19 QYNGCSSPSKYGPQNEPATLCNDHKKAGMYTIRNGELLRATRNGRA 156
            Q+  C    +YG  + P T C  HK+AGMYT R+G L  ATR+G A
Sbjct:   83 QHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGVLYVATRDGSA 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20970.5465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G084_ECTSI9.300e-852.17Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KL62_9PHAE5.840e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH38_ECTSI9.030e-547.83EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20970contigH-paniculata_contig20970:292..3199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929552.7441204-CDS-H-paniculata_contig20970:291..3771622929552.7441204-CDS-H-paniculata_contig20970:291..377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20970 292..377 -
1691480910.7571254-CDS-H-paniculata_contig20970:291..3771691480910.7571254-CDS-H-paniculata_contig20970:291..377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20970 292..377 -
1622929552.7620387-CDS-H-paniculata_contig20970:3045..31991622929552.7620387-CDS-H-paniculata_contig20970:3045..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20970 3046..3199 -
1691480910.7672682-CDS-H-paniculata_contig20970:3045..31991691480910.7672682-CDS-H-paniculata_contig20970:3045..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20970 3046..3199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20970.5465.1prot_H-paniculata_contig20970.5465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20970 292..3199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20970.5465.1

>prot_H-paniculata_contig20970.5465.1 ID=prot_H-paniculata_contig20970.5465.1|Name=mRNA_H-paniculata_contig20970.5465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MCLYARQYNGCSSPSKYGPQNEPATLCNDHKKAGMYTIRNGELLRATRNG
RANIWKRCQVSGCTAKPSYGSMRGECCYM*
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mRNA from alignment at H-paniculata_contig20970:292..3199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20970.5465.1 ID=mRNA_H-paniculata_contig20970.5465.1|Name=mRNA_H-paniculata_contig20970.5465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2908bp|location=Sequence derived from alignment at H-paniculata_contig20970:292..3199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCTGTACGCGCGGCAGTACAACGGGTGCTCTAGCCCTTCGAAGTA
TGGGCCACAAAACGAGCCGGCAACCCTTTGCAACGACCACAAGAAGGCTG
GTATGTACACCATCCGTAACGGAGAGCTACTGAGAGCAACTCGCAACGGT
AGAGGTAAGTCACGGGCGTGAAAATCGAAGCCTTATACTCTTTGGAAACT
CAGTCTGAGTTTCGTCATTGTATTTGCGCGAGATACGTGATTCTTTCCCG
GTACAGCAACACACAGAGCGCGCAAACAAAGTGTGGAAATCGCGATGGCG
ACAGGAACATGACGTGGGCGAATTTGAAACCCGTCACGTTTCTCTTATTC
TTCGCTTTTTCAGACGAAATTTAATCACGTTGTACAACCCTTGGTTGGAA
CTGAACAAAACCAGTCGTCAGGATGTTCATTCTACGGATTGTTTATTTCA
ACAATTGGTTCAACTGCGAAGAAAATTTACTCATCGCAGTTGCCGTTCGG
TGCACCCCGGCAGGTCGAACAAGCAACCCTATCGAACAAGAATCCGAGCC
TGTTGCGACTGTTGCCAACGCCAATAATGACAGTATATCACAGTCAGGCA
CGGGCGAATTACCTATATCAGGTGATGGATCACACGATGAGGATAGCCCT
AGCCAAGACCCAGTTAGTGAGAGCGATACCGTTGCGGCTGATTGAGTTGT
GGGGGGCATGTTCGAGTGATAGTCGCGAGTTGAGGTCACCCTATAGCTGT
GACCCCTCAGCGTGGATGAGCAATCCCCTGTGACCACCTCAAGTACGCTC
CCGCTTAGCAAGAAACACTCCAAAAATCGAGCCTATTAAATGAAAAAAAA
TCAACGTAAGAAAATGTTGCGAAAAGCCAAATGAGATGTCGAGCAGGAAA
GAAATGGTCTTAATGCCTGTGTTCGTTTTAGGTGGATGGTTTTGATACTG
ATGGAACGATGGGCGAAAACGTCAAATGCAATAGCACAACCTCATCTGAT
TCAAATTGAGGAATTGTATTCGTTGATCTGTAGCCCCTGAGAGAGACTTT
GATCCCCCAAAGACACAAGGACAACGGATGCACACAACTTTTCCCTCATC
CTGAAGAATCTGGGTTGGTGGGGTTCTGTTAGGTTGACCTCATCGAATCT
CAGCGTGTGTCTGTGTGTGCGTGTGAGTGTTTACTGGTCTTCATTTTCCG
AAACCGGTTGAGCGCGGGAAAGCTGTTTCAGATCTGCCAGCGTCATTTTT
TGTATTTTTTTTTTTTATACTATGTTGCACCTCGTATTGGCTCAGAAACC
CATTGAGACCGAAATAACACTACTCCACATCCCTGTTTATTTACCCTGGG
GGTGAGATATAGAGGCTCCCCGTGAGTCATTGAGGTCTCATTGCGCGCAT
GAGCATACGAAATAGGCTTCTTCCATGAATAAAACAGAATCCCGTTCCCC
GCCAGCCAAAGACGCTCCCTTTGTTCGCACTACATTGTTGACGTTTCATG
TGAATTGCAACAGAGGTGTTAATGTGAGAATATTCGATAGAAGGAGATAA
TTTGCATGAATGTCTTCAAACGACAAAACGTATTTTCACGAGGGCGTTGC
CGGTGGACCCGTTCAACTACAATATCTAAAGGGGATGGGCGTCTAGCCCG
GTTGTAAGGGGTGCTGGACTTCGGACTATTGATCACGAAGAGTGGAATAT
CTTTTGAGACAGTGTGAAAATGGTCGCCCACACACCTAGATAGCCAGTAT
CATCTCTCCATGAAGAGGCAGAAAATTTTTGTATAAAGGAGAGGAATTCT
TACCTCTGGTCGGCTGAAACCTGTTTTTCCCGACGAATCTCGTACCAAAA
GCAAATCCCCCAAAACCGCTTACAAAAAACAAAAATATTAGGAGGGGGGA
GAGTGGTGTGGAGAATAGCCTACCCAAGGGGGTAATTCGCACAAGTGTCT
GCCGAGGGCAAACAATCGTTTCACAACAATATGAATTGAATCGAATAAGA
AACCTGGTGCCTATTTCACCATTTTCACTGCCCATTTCAAATTTTGGTCG
GCTGCAAGCCGCCGATGCGTACATCTGTTTTGGCGAGCAAAGAGGGACAA
TTTCGCGGTTGGATGTGGCAAATATAGGTACAGCCAGTAGCGACCGTACA
TCGTTACTGCTGACTATTTTATGTGGATTTACGTACGCGTAGGAGCAAGT
GTCCATAGAAATGGCAACAGGTGAAAGGCGCCGAAAGGTAGGAGATCTAA
ATATAGTCATTATGCTTCCTCAACACTCCTCCCATGAAAAAATTGGGTGA
GGTCCGAACTAAAGCTTCAACGTCACCGATAATGGAGGCACAAACCCCGT
CCGGAGTAGATGTTTATTGTAAGAGCATCTTCACTGAACTCGGTTGTGTC
TTAAACTCTGCCTGCGCAAGGCGGATTATGACTTAGTTTTGCCGCGTTCA
GAAGGAACGCTGCACATTGTGCTGTGAGGACAAACGAGCAACTATGAGAA
CAAGACGTTCAGGCATACACTCTCGGTGAAAGTCGAGTTATATTTGCTTT
GTCATCCTACTTTGTCATCTCATCTCGAAATATGGTAAGAGAGCTAAGAT
CGCATTAGTATACCAGTATTAGATAAGATCATGTTGAGCGGGGTGTTGTA
TTGCCTTTGGGACGTCTTCCTCTCGGACCTACATTTCCGAAGTAGCAATC
GCGTGTATGATGAGTTGTACCAATCACCCCTTCGAATAGCAACTGCTCAA
ACCATTGCACCGACAAATCTGAGGTTTTTCATGATGCTGTTCATAACCGC
TATTTTGCCTTGGAACCTGCAGCGAATATCTGGAAGCGGTGCCAGGTTTC
TGGTTGCACAGCGAAGCCGAGTTATGGGTCAATGAGAGGTGAGTGCTGCT
ACATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20970:292..3199-

>mRNA_H-paniculata_contig20970.5465.1 ID=mRNA_H-paniculata_contig20970.5465.1|Name=mRNA_H-paniculata_contig20970.5465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig20970:292..3199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCTGTACGCGCGGCAGTACAACGGGTGCTCTAGCCCTTCGAAGTA
TGGGCCACAAAACGAGCCGGCAACCCTTTGCAACGACCACAAGAAGGCTG
GTATGTACACCATCCGTAACGGAGAGCTACTGAGAGCAACTCGCAACGGT
AGAGATGTGTCTGTACGCGCGGCAGTACAACGGGTGCTCTAGCCCTTCGA
AGTATGGGCCACAAAACGAGCCGGCAACCCTTTGCAACGACCACAAGAAG
GCTGGTATGTACACCATCCGTAACGGAGAGCTACTGAGAGCAACTCGCAA
CGGTAGAGCGAATATCTGGAAGCGGTGCCAGGTTTCTGGTTGCACAGCGA
AGCCGAGTTATGGGTCAATGAGAGGTGAGTGCTGCTACATGTGACGAATA
TCTGGAAGCGGTGCCAGGTTTCTGGTTGCACAGCGAAGCCGAGTTATGGG
TCAATGAGAGGTGAGTGCTGCTACATGTGA
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