mRNA_H-paniculata_contig2097.5463.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2097.5463.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 2.310e-115 Identity = 312/858 (36.36%), Postives = 412/858 (48.02%), Query Frame = 1
Query: 1 VFYSAPSADFAINYRWPTRPSLPQLPWRADDHPRLYTPQYDASTAPSGKNHDGRGSLQVKNXXXXXXXXXXXXGDTSWCGGSVTSGSSNYNSPTASDICSLGEMSVSSPSLSSRPFHIFRSKKTYQVVAVGDSFLPPRNFSH---NQGSAAKHAFAASLMTCASSGVGAVDARDTRTMP----------NNAIHLPPM--------PCTLSSNNTIKNIGAVGKHVGGGDVPVKILKPGAPGKPLLPSFERKFSTRHKQWSREAEKKEEERAFREVSRAEELLLRNSEVESTGTGTDDGHRGVCGRGLFPATAAIEARYFQAATRQSRSRGRDSRGHRNSGTRY-------------WERGPGVMECVPEREAYLLTGIFHQLDARERGEVRLDEALFHMTENAQVKADIKQVSLWTMIKTRRWKWLEELFAAQRGRTLTLPALLDYNRNLSEEPAVRRKDIRITAAQREENAGRLDGRSRRLLPANLTEGQEVEALFMKGFEWYRAWVVKDNGDDTFHVTYVSPSGSETFTSDESVTSGELTARNTVGGGDQCPEID--ERMKRPERPLRENGKGEYSGSENEEWKTTCENVANLIAGKPPDLGIPESKLLERAFNYIANALSSS---------------GKSMSQRGV-GPKPVDAPDATT--NCNKDAGIGPGHYSHEKKSVDDVGQSPEYQNVLLRPAEAEECGTPSSTGIKNSAGGTTSNACGYDITQRVPAEKIMEALLTGLVEDYRRASPSLTAVCMYPEFAQGLKECVADTVTSPSTGECATSRWGSADIGKDNQGVDDSGETPFNNNDGAMGRDGRVVGRLGISNAEFCEYFEAITDLVDLNGLSLVPK 2412
+FY+APSA+ A+NY WPTR SL +P D +G+ GRG ++ GD + S S + S CS + S+RPFH+F KKT+QV D F+PPR+ S G + HA AA G T+ + A+HLPP+ P + S + A G+ + P +P + + SFERK + R +QWSREAE++ EERAF E R +ELLL G DDG GR + A +TR R R+ G R + R W V E VPE E LLT ++ LDAR RGEVRLDE LF+MTENAQVK+ +KQV LW + KTRRW W++EL AAQ GRTLTLPALL ++R+L EE V RK +R+ E R D RS+RLLPA+L EG EVEALF KGFE YRAW+V+ + DDTF V + P + SDE R G+Q PE++ R E R + + +E EEWK TC++VA I G PPDLG E+++LE+AF+ I N +S + + S +G+ GPK + P A N N++ G + ++ D G E +N L+ GTP + D RVPA +I+ L G ++ YRRASP+L+A C+Y EFA+GL+ A T E T+ AD D +G G+ R R G GIS EFC+YFEA+TDLVDLNGLSLVP+
Sbjct: 601 IFYNAPSAEMAMNYTWPTRGSLDGTTLGQKSSG---SPMGDTEVTWTGRGSSGRGGGGGESPCTTSRG-----GDDAGTALSAAQSSRDVLSDWNPSSCSSSSAGTGTEGSSTRPFHVFCGKKTHQVFPARDCFVPPRHLSEPTTKHGLISVHALAAXXXXXXXCPAGREKTAGPETVDPAGANAPSGVSKAVHLPPLLETHGEGWPAAVPSAG---RVAATGEPLSSNKRPPSWQRPRS-----VSSFERKLAARRQQWSREAEEEAEERAFAEQRRTQELLLGVQ-------GIDDGGWQGGGRAGYRYKVGETAAISPGSTRAGRRCHRNGGGVRFARQRRAXXXXXXXXXXXDWGDDEKVTELVPEVEEKLLTEMYGMLDARHRGEVRLDEVLFYMTENAQVKSILKQVPLWMLTKTRRWAWVDELLAAQPGRTLTLPALLAFSRSLHEESHVPRKHLRLATELGEGGVERKDVRSKRLLPADLVEGAEVEALFRKGFERYRAWIVRCHADDTFDVRFTPP---PSLCSDE-----PSPRRGGQEAGEQRPELETSSRFSGSEEDWRSDAENSSLKAE-EEWKATCDSVARFI-GIPPDLGETETEVLEKAFDAIVNLVSPTTQAALDSDETDAVGDARGKSGKGIKGPKGITTPTANQPPNPNREDATQQGGLARRRQHED--GGHLERKNGLV--------GTPDA-----------------DAAPRVPAGEIIRLLRAGAIDGYRRASPALSAACIYAEFAEGLEGAAA---TRGQDREARTANHPIADCCTDEEGDTRGGQ-----------RGSRDKGEWGISKEEFCDYFEAVTDLVDLNGLSLVPQ 1384
BLAST of mRNA_H-paniculata_contig2097.5463.1 vs. uniprot
Match: A0A6H5JU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU28_9PHAE) HSP 1 Score: 369 bits (947), Expect = 2.180e-110 Identity = 322/840 (38.33%), Postives = 414/840 (49.29%), Query Frame = 1
Query: 1 VFYSAPSADFAINYRWPTRPSLPQLPWRADDHPRLYTPQYDASTAPSGKNHDGRGSLQVKNXXXXXXXXXXXXGDTSWCGGSVTSGSSNYNSPTASDICSLGEMSVSSPSLSSRPFHIFRSKKTYQVVAVGDSFLPPRNFSH---NQGSAAKHAFAASLMTCA---------SSGVGAVDARDTRTMP--NNAIHLPPMPCTLSSNNTIKNIGAVGKHVGGGDVPVKILKPGAPGKPL-LPSFERKFSTRHKQWSREAEKKEEERAFREVSRAEELLLRNSEVESTGTGTDDGH---RGVCG-RGLFPATAAIEARYFQAA------------TRQSRSRGRDSRGHRNSGTRYWERGPGVMECVPEREAYLLTGIFHQLDARERGEVRLDEALFHMTENAQVKADIKQVSLWTMIKTRRWKWLEELFAAQRGRTLTLPALLDYNRNLSEEPAVRRKDIRITAAQREENAGRLDGRSRRLLPANLTEGQEVEALFMKGFEWYRAWVVKDNGDDTFHVTYVSPSGSETFTSDESVTSGELTARNTVGGGDQCPEID--ERMKRPERPLRENGKGEYSGSENEEWKTTCENVANLIAGKPPDLGIPESKLLERAFNYIANALSSSGKSMSQRGVGPKPVDAPDATTNCNKDAGIG---PGHYSHEKKSVDDVGQSPEYQNVLLRPAEAEECGTPSSTGIKNSAGGTTSNACGYDITQRVPAEKIMEALLTGLVEDYRRASPSLTAVCMYPEFAQGLKECVADTVTSPSTGECATSRWGSADIGKDNQGVDDSGETPFNNNDGAMGRDGRVVGRLGISNAEFCEYFEAITDLVDLNGLSLVPK 2412
+FY+APSA+ A+NY WPTR SL D L + + GRGS XXXXXXXXXXXX S+RPFH+FR KKT+QV D F+PPR+ S G + HA A A ++G VD + A+HLPP+ T + G+ G+ +P + +P + SFERK + R +QWSREAE++ EERAF E R +ELLL G DDG G+ G R TA I QA TRQ R R +RG R+ G W+ V E VPE E LLT +F LDAR RGEVRLDE LF+MTENAQVK+ +KQV LW + KTRRW W++EL AQ GRTLTLPALL ++R+L EE V RK +R+ RE R D RS+RLLPA EG EVEAL+ KGFE YRAW+V+ + DDTF V + P + SD G R +Q PE++ R E + + +E EEWK TC++VA I G PPDLG E+++L++AF+ I N +S + +Q +G D DA + G G P + +D Q Q L R + E+ G + KN GT D RVPA +I+ L G ++ YRRASP+L+A C+YPEFA+GL++ A T E + AD G D G+T G G G G+S EFC+YFEA+TDLVDLNGLSLVP+
Sbjct: 183 IFYNAPSAEMAMNYTWPTRGSL--------DGITLGQQSSGSLMGDTEVRWTGRGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTGMEGSSTRPFHVFRGKKTHQVFPAKDCFVPPRHLSEPTTKHGLISVHALTAGAAGAAGACPAGREKTAGPETVDPAGANAPSGVSKAVHLPPLLETPGEGWPAA-VPIAGRAAVTGEPLSSNKRPPSWQRPRSVSSFERKLAARRQQWSREAEEEAEERAFEEQWRTQELLLGVQ-------GLDDGGWQGGGIAGYRYKVGGTAGISQGSTQAGRRCHGNGGGVMCTRQRRVR---TRGWRDRGHHDWDDDGKVTELVPELEEKLLTEMFGILDARHRGEVRLDEVLFYMTENAQVKSILKQVPLWMLTKTRRWAWVDELLDAQPGRTLTLPALLAFSRSLHEESHVPRKHLRLATELREGGVERKDVRSKRLLPAEFVEGAEVEALYRKGFERYRAWIVRCHADDTFDVRFTPP---PSLCSD-----GSFPRRGGEEPVEQRPELETSSRFSGSEEDWTSDAENSSLKAE-EEWKATCDSVARFI-GIPPDLGETETEVLQKAFDAIVNLVSPT----TQAALG---SDKADAVGDARGKGGKGITTPTANQPPNSNREDATQ----QGGLARRRQHEDGGHLET---KNGVVGTRD----ADAAPRVPASEIIRLLRAGAIDGYRRASPALSAACIYPEFAEGLEDAAA---TRGQDSEARAANHPIADCGTD------EGDT----RGGQQGGGGEE--EWGVSKEEFCDYFEAVTDLVDLNGLSLVPQ 960 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2097.5463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2097.5463.1 >prot_H-paniculata_contig2097.5463.1 ID=prot_H-paniculata_contig2097.5463.1|Name=mRNA_H-paniculata_contig2097.5463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=804bp VFYSAPSADFAINYRWPTRPSLPQLPWRADDHPRLYTPQYDASTAPSGKNback to top mRNA from alignment at H-paniculata_contig2097:9205..14354+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2097.5463.1 ID=mRNA_H-paniculata_contig2097.5463.1|Name=mRNA_H-paniculata_contig2097.5463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5150bp|location=Sequence derived from alignment at H-paniculata_contig2097:9205..14354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2097:9205..14354+ >mRNA_H-paniculata_contig2097.5463.1 ID=mRNA_H-paniculata_contig2097.5463.1|Name=mRNA_H-paniculata_contig2097.5463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4824bp|location=Sequence derived from alignment at H-paniculata_contig2097:9205..14354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |