mRNA_H-paniculata_contig2096.5459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2096.5459.1
Unique NamemRNA_H-paniculata_contig2096.5459.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2096.5459.1 vs. uniprot
Match: A0A6H5KJS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-7
Identity = 41/100 (41.00%), Postives = 49/100 (49.00%), Query Frame = -3 
Query: 1450 LTCDVLDLPGDAYAWFHRPQP----WGDVVAAYHPLFQHVHVTPVDVLLRLANGRLYVAPHAQEYLAALHPGWERTLPQWTHDVNAALGNGGDP-PPFPR 1734
            L CDV  +    Y +F R +     W  +V  Y   F    + P  VLLRL  GR+Y+APH QEYL  L    E  L  +T  V  AL N   P PPFPR
Sbjct:   35 LFCDVFGMDRSVYIYFPRGRNEDNGWDRLVQRYRSTFYAHGIRPYQVLLRLPRGRIYIAPHVQEYLVHLDQECESHLTFYTVAVQNALRNPAQPLPPFPR 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2096.5459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJS3_9PHAE2.000e-741.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2096contigH-paniculata_contig2096:4757..6690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1936
Cds size987
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.2150986-CDS-H-paniculata_contig2096:4756..57431622929551.2150986-CDS-H-paniculata_contig2096:4756..5743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2096 4757..5743 +
1691480910.350005-CDS-H-paniculata_contig2096:4756..57431691480910.350005-CDS-H-paniculata_contig2096:4756..5743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2096 4757..5743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.2287812-UTR-H-paniculata_contig2096:5743..66901622929551.2287812-UTR-H-paniculata_contig2096:5743..6690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2096 5744..6690 +
1691480910.361171-UTR-H-paniculata_contig2096:5743..66901691480910.361171-UTR-H-paniculata_contig2096:5743..6690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2096 5744..6690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2096.5459.1prot_H-paniculata_contig2096.5459.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2096 4757..5743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2096.5459.1

>prot_H-paniculata_contig2096.5459.1 ID=prot_H-paniculata_contig2096.5459.1|Name=mRNA_H-paniculata_contig2096.5459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=329bp
PVSATVCIPSGNCLGVYTCFFLLQYARSGSAFVAVAVSAASVSATAAAAV
ACSPAFAIVITAAVSVSCSDPPIPPIQPSSCSASSPVDSFAPGFTRVGAT
SSSCSSAFKSAAAYFPAPSPSLLLCLPSSLPPRPFVLTPFAPLVLSPRSP
SPFPMSSLSPTRPRPSASAPRAVCPAASTLNPTSPSFLKPSASPAPLLPS
RPPPPSPLSVPSVFHIPLVPSLSQSPATCPVPPAARPVGLLDPPAPRSPA
PLPPRCRLRCFRYFLRFHRGRLFHCCFHDSRRLLRRQRCLRPRCHLRPYN
QHSLRYPRSTLPPLHRLLHLQHGVRSQW*
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mRNA from alignment at H-paniculata_contig2096:4757..6690+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2096.5459.1 ID=mRNA_H-paniculata_contig2096.5459.1|Name=mRNA_H-paniculata_contig2096.5459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1934bp|location=Sequence derived from alignment at H-paniculata_contig2096:4757..6690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTTTCCGCCACTGTGTGCATTCCTTCCGGTAACTGCCTCGGTGTTTA
CACCTGCTTCTTCCTCCTCCAATACGCCAGGTCCGGCAGCGCCTTCGTTG
CTGTCGCCGTATCCGCTGCATCTGTCTCCGCCACCGCCGCCGCTGCTGTC
GCCTGCTCCCCCGCCTTCGCCATCGTCATCACTGCCGCTGTCTCCGTCTC
CTGTAGCGATCCTCCTATCCCTCCCATTCAGCCTTCCTCATGCTCTGCCT
CATCCCCCGTTGACAGCTTCGCCCCCGGCTTCACCCGCGTTGGCGCCACT
TCCTCCTCTTGCTCCTCCGCTTTCAAATCCGCCGCCGCCTACTTCCCCGC
GCCGTCTCCGTCTCTGCTCCTGTGTCTGCCTTCGTCTCTGCCGCCGCGGC
CTTTCGTGCTGACGCCATTTGCACCTCTTGTGCTGTCACCACGGTCGCCT
TCCCCATTCCCGATGTCATCCCTGTCCCCCACTCGTCCCCGTCCTTCGGC
ATCTGCGCCGCGAGCGGTCTGCCCCGCGGCGTCCACGTTGAATCCAACCT
CTCCTTCGTTCCTGAAGCCGTCAGCGTCACCTGCGCCACTGCTTCCTTCA
CGACCCCCTCCACCGTCGCCGCTTTCGGTGCCTTCCGTGTTCCATATTCC
CCTTGTTCCATCCCTCTCCCAGTCGCCAGCGACATGCCCGGTCCCACCAG
CAGCGCGGCCGGTAGGTCTTCTTGATCCTCCGGCTCCAAGGTCGCCGGCG
CCGCTACCGCCTCGTTGCCGTCTTCGTTGTTTTCGCTACTTCCTCCGCTT
TCATCGCGGCCGCCTGTTCCACTGTTGTTTCCATGACTCTCGCCGGCTCC
TGCGCCGCCAGCGGTGCCTACGCCCCCGCTGCCATCTCCGCCCCTACAAT
CAGCACTCCCTCCGTTACCCTCGTTCCACACTTCCCCCGCTCCACCGCCT
CCTTCATTTACAGCACGGCGTCCGCTCTCAATGGTGACGCTATCATCATC
TCCCCGTGCCGCTCCGGTCCCAGGGTTGAGGGGGACTTCGCTGCCTCCGT
CGCCGCTGCCGCCATTGTCACCCTCCCTGCTGTCGTCACCTTCTCTGTGG
TCACCTGCTCTGCCTTGGTGTCTATCGCCTTTGCGGGCATCGCCGCCGCC
ATTTTCTTCCTCTCCGGTAGTACGCGCTCCCGCGCTCCCGTGCTCCCTCT
CTCCCAGTCCGACAACCCCTCCGTTACCAGTGATGCGTCCGCATTCACTA
GCGAAGGCTCCTTCATTTCCACCCGCGCCTCCGCTATGAGGGCTACCGAT
TCCTGTGCCGACGCGACGCTTCCGGCGCCACCGTCAGCACTCCCGCTCTC
CCCTCCGCTCCCCACGGCGCCTCTCCTGCCCGTGCCGGCATCGGCCTCGA
TCTCCCCGTCTCCGTCGCCATCTCTATTTCCGCCCACCTAGAATGGGGCC
CGCGGGAACGGTGGGGGGTCACCGCCGTTGCCCAGAGCCGCATTGACGTC
GTGCGTCCACTGCGGAAGGGTGCGCTCCCAGCCCGGGTGCAAGGCCGCGA
GGTATTCTTGTGCATGGGGGGCGACGTAGAGTCTCCCATTTGCGAGACGC
AGGAGAACATCTACTGGTGTCACGTGTACATGCTGAAACAGGGGGTGGTA
CGCCGCCACTACGTCGCCCCAAGGCTGGGGCCGGTGGAACCAGGCGTACG
CGTCACCTGGCAGATCCAGGACGTCACAAGTAAGCGGGAAGGAAGTACGA
TGTCATACAACAGCGGCCGTGGTGGCACACATATCGGTCAAAGGTGATGT
GCGGCATCAGCGGCCGGTTGTACCAGTCCGCAGGGGGGATGCTACTTCCC
AACCTAATGAGTGTGGCGAAATCAACAGCCTCGCGAAGGTCTGTGTTGAC
CCTTGGCCAGTCGAGGTACCCGGGGAAATTTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2096:4757..6690+

>mRNA_H-paniculata_contig2096.5459.1 ID=mRNA_H-paniculata_contig2096.5459.1|Name=mRNA_H-paniculata_contig2096.5459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at H-paniculata_contig2096:4757..6690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTTTCCGCCACTGTGTGCATTCCTTCCGGTAACTGCCTCGGTGTTTA
CACCTGCTTCTTCCTCCTCCAATACGCCAGGTCCGGCAGCGCCTTCGTTG
CTGTCGCCGTATCCGCTGCATCTGTCTCCGCCACCGCCGCCGCTGCTGTC
GCCTGCTCCCCCGCCTTCGCCATCGTCATCACTGCCGCTGTCTCCGTCTC
CTGTAGCGATCCTCCTATCCCTCCCATTCAGCCTTCCTCATGCTCTGCCT
CATCCCCCGTTGACAGCTTCGCCCCCGGCTTCACCCGCGTTGGCGCCACT
TCCTCCTCTTGCTCCTCCGCTTTCAAATCCGCCGCCGCCTACTTCCCCGC
GCCGTCTCCGTCTCTGCTCCTGTGTCTGCCTTCGTCTCTGCCGCCGCGGC
CTTTCGTGCTGACGCCATTTGCACCTCTTGTGCTGTCACCACGGTCGCCT
TCCCCATTCCCGATGTCATCCCTGTCCCCCACTCGTCCCCGTCCTTCGGC
ATCTGCGCCGCGAGCGGTCTGCCCCGCGGCGTCCACGTTGAATCCAACCT
CTCCTTCGTTCCTGAAGCCGTCAGCGTCACCTGCGCCACTGCTTCCTTCA
CGACCCCCTCCACCGTCGCCGCTTTCGGTGCCTTCCGTGTTCCATATTCC
CCTTGTTCCATCCCTCTCCCAGTCGCCAGCGACATGCCCGGTCCCACCAG
CAGCGCGGCCGGTAGGTCTTCTTGATCCTCCGGCTCCAAGGTCGCCGGCG
CCGCTACCGCCTCGTTGCCGTCTTCGTTGTTTTCGCTACTTCCTCCGCTT
TCATCGCGGCCGCCTGTTCCACTGTTGTTTCCATGACTCTCGCCGGCTCC
TGCGCCGCCAGCGGTGCCTACGCCCCCGCTGCCATCTCCGCCCCTACAAT
CAGCACTCCCTCCGTTACCCTCGTTCCACACTTCCCCCGCTCCACCGCCT
CCTTCATTTACAGCACGGCGTCCGCTCTCAATGGTGACCCGTTTCCGCCA
CTGTGTGCATTCCTTCCGGTAACTGCCTCGGTGTTTACACCTGCTTCTTC
CTCCTCCAATACGCCAGGTCCGGCAGCGCCTTCGTTGCTGTCGCCGTATC
CGCTGCATCTGTCTCCGCCACCGCCGCCGCTGCTGTCGCCTGCTCCCCCG
CCTTCGCCATCGTCATCACTGCCGCTGTCTCCGTCTCCTGTAGCGATCCT
CCTATCCCTCCCATTCAGCCTTCCTCATGCTCTGCCTCATCCCCCGTTGA
CAGCTTCGCCCCCGGCTTCACCCGCGTTGGCGCCACTTCCTCCTCTTGCT
CCTCCGCTTTCAAATCCGCCGCCGCCTACTTCCCCGCGCCGTCTCCGTCT
CTGCTCCTGTGTCTGCCTTCGTCTCTGCCGCCGCGGCCTTTCGTGCTGAC
GCCATTTGCACCTCTTGTGCTGTCACCACGGTCGCCTTCCCCATTCCCGA
TGTCATCCCTGTCCCCCACTCGTCCCCGTCCTTCGGCATCTGCGCCGCGA
GCGGTCTGCCCCGCGGCGTCCACGTTGAATCCAACCTCTCCTTCGTTCCT
GAAGCCGTCAGCGTCACCTGCGCCACTGCTTCCTTCACGACCCCCTCCAC
CGTCGCCGCTTTCGGTGCCTTCCGTGTTCCATATTCCCCTTGTTCCATCC
CTCTCCCAGTCGCCAGCGACATGCCCGGTCCCACCAGCAGCGCGGCCGGT
AGGTCTTCTTGATCCTCCGGCTCCAAGGTCGCCGGCGCCGCTACCGCCTC
GTTGCCGTCTTCGTTGTTTTCGCTACTTCCTCCGCTTTCATCGCGGCCGC
CTGTTCCACTGTTGTTTCCATGACTCTCGCCGGCTCCTGCGCCGCCAGCG
GTGCCTACGCCCCCGCTGCCATCTCCGCCCCTACAATCAGCACTCCCTCC
GTTACCCTCGTTCCACACTTCCCCCGCTCCACCGCCTCCTTCATTTACAG
CACGGCGTCCGCTCTCAATGGTGA
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